Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

3060895 .. 3061626

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1018400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAATACAATGAGATATCTCACTTCAGCCACCCCCAACACAAGCTCAAGTTTGAGTACTCAGAAATCCCGTTCAAGTGTGATGGTTGCAAGGAGGTCGGCATAGGCTCGCGCTACAAGTGCGCGACGTGTGACTTCGACCTCCATATGCACTGTGCCATACCTACCCCTTCCATCTTCCACCCTTTCTATACCAAGTGCTCCTTCCAGTTCCTCTCGAGGTCACCCGGGGATAACCCTCGCTTTTGCAATGCGTGTGAGAAGGATATAACCGGATTCGTGTACCATTGCAAGTCATGTGGGTTCGACCTTCACCCATGTTGCGCAAAGCTTCCCATGGTGCTGGACGACGGGGAGGTCAAGCTCTATCTGTATCGAAAAGTGAGTAGCTCTTGCCATAGGTGCGGGCGTAAAGGACGGAGTTGGAGCTATAGGTCAAAATGCAAGAAATATAATTTGCATGTGGCGTGTGTGAAGGAAATGCTTGTGGAAACTTGGCATGAGTTTTTGGGGTCGCATGGGAATAAAAGTACTAGCAGTAGAAAATTGGAGATGACTAGAATTCCTAGTCTTAAGAATACACTTCAGAATCATCACCGTAGGAGCAAAGGTAAGGTGAAGAAGTGTTGTGAGATGGCTGGATTGGCTGTGCAATTTGTCATATCAGCAGTGTTAGGCGATCCAACGACTCTGATCGCTGGGGTTATTGGGAATTTCATGTCACGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

9.22

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	9 - 53	1.8e-10	C1 domain
C1_2	PF03107	72 - 109	6.5e-08	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
Acc16I	TGCGCA	1 cut(s)	325
AccII	CGCG	2 cut(s)	112, 125
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	2 cut(s)	561, 712
AcuI	CTGAAG	2 cut(s)	10, 569
AfaI	GTAC	3 cut(s)	59, 284, 532
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	6 cut(s)	46, 331, 364, 390, 429, 728
AluI	AGCT	6 cut(s)	46, 331, 364, 390, 429, 728
Alw21I	GWGCWC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	674
Ama87I	CYCGRG	2 cut(s)	217, 227
ApoI	RAATTY	2 cut(s)	561, 712
AspLEI	GCGC	3 cut(s)	114, 125, 326
AsuC2I	CCSGG	2 cut(s)	228, 229
AsuHPI	GGTGA	4 cut(s)	216, 305, 587, 628
AvaI	CYCGRG	2 cut(s)	217, 227
BauI	CACGAG	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	3 cut(s)	77, 182, 628
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcnI	CCSGG	2 cut(s)	228, 229
BfaI	CTAG	3 cut(s)	534, 558, 567
BfmI	CTRYAG	1 cut(s)	430
BfrI	CTTAAG	1 cut(s)	572
BmcAI	AGTACT	2 cut(s)	59, 532
Bme1390I	CCNGG	2 cut(s)	228, 229
BmeT110I	CYCGRG	2 cut(s)	217, 227
BmgBI	CACGTC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	228, 229
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	228, 229
BsaJI	CCNNGG	3 cut(s)	227, 228, 336
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	2 cut(s)	256, 286
BseDI	CCNNGG	3 cut(s)	227, 228, 336
BseMI	GCAATG	2 cut(s)	256, 286
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	112, 125
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	217, 227
BsiSI	CCGG	2 cut(s)	228, 273
BsoBI	CYCGRG	2 cut(s)	217, 227
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	679, 693
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	112, 125
BspPI	GGATC	1 cut(s)	674
BspTI	CTTAAG	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	256, 286
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	227, 228, 336
BssMI	GATC	2 cut(s)	679, 693
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	155, 599
BstAFI	CTTAAG	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	110, 407
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	222
BstFNI	CGCG	2 cut(s)	112, 125
BstHHI	GCGC	3 cut(s)	114, 125, 326
BstKTI	GATC	2 cut(s)	682, 696
BstMBI	GATC	2 cut(s)	679, 693
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 402, 644
BstNSI	RCATGY	1 cut(s)	464
BstPI	GGTNACC	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	226, 227
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	2 cut(s)	112, 125
BstXI	CCANNNNNNTGG	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	2 cut(s)	151, 675
Cac8I	GCNNGC	2 cut(s)	110, 407
CfoI	GCGC	3 cut(s)	114, 125, 326
Cfr9I	CCCGGG	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	58, 283, 531
CspCI	CAANNNNNGTGG	2 cut(s)	280, 315
CviAII	CATG	7 cut(s)	297, 318, 337, 461, 500, 518, 718
CviQI	GTAC	3 cut(s)	58, 283, 531
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	681, 695
DpnII	GATC	2 cut(s)	679, 693
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	10, 569
Eco88I	CYCGRG	2 cut(s)	217, 227
Eco91I	GGTNACC	1 cut(s)	222
EcoO65I	GGTNACC	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	7 cut(s)	300, 321, 340, 464, 503, 521, 721
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	7 cut(s)	296, 317, 336, 460, 499, 517, 717
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	147
FspBI	CTAG	3 cut(s)	534, 558, 567
FspI	TGCGCA	1 cut(s)	325
GlaI	GCGC	3 cut(s)	113, 124, 325
GsaI	CCCAGC	1 cut(s)	702
HapII	CCGG	2 cut(s)	228, 273
HhaI	GCGC	3 cut(s)	114, 125, 326
Hin1II	CATG	7 cut(s)	300, 321, 340, 464, 503, 521, 721
Hin6I	GCGC	3 cut(s)	112, 123, 324
HinP1I	GCGC	3 cut(s)	112, 123, 324
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	276, 589, 688
HpaII	CCGG	2 cut(s)	228, 273
HphI	GGTGA	4 cut(s)	216, 305, 587, 628
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	64, 588, 693
Hpy188III	TCNNGA	2 cut(s)	217, 723
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	130, 353
HpyAV	CCTTC	5 cut(s)	180, 214, 256, 320, 469
HpyCH4III	ACNGT	2 cut(s)	155, 599
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	7 cut(s)	90, 151, 249, 291, 444, 460, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 402, 644
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	7 cut(s)	300, 321, 340, 464, 503, 521, 721
HspAI	GCGC	3 cut(s)	112, 123, 324
Kzo9I	GATC	2 cut(s)	679, 693
LmnI	GCTCC	3 cut(s)	206, 426, 603
LpnPI	CCDG	6 cut(s)	221, 241, 286, 329, 624, 684
MaeI	CTAG	3 cut(s)	534, 558, 567
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	131, 222, 720
MalI	GATC	2 cut(s)	681, 695
MboI	GATC	2 cut(s)	679, 693
MboII	GAAGA	2 cut(s)	169, 631
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	454, 545, 561, 653, 712
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	2 cut(s)	404, 707
MnlI	CCTC	6 cut(s)	88, 152, 213, 224, 249, 349
MseI	TTAA	1 cut(s)	573
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	2 cut(s)	228, 273
MspR9I	CCNGG	2 cut(s)	228, 229
MvnI	CGCG	2 cut(s)	112, 125
MwoI	GCNNNNNNNGC	3 cut(s)	120, 402, 644
NciI	CCSGG	2 cut(s)	228, 229
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	2 cut(s)	679, 693
NlaIII	CATG	7 cut(s)	300, 321, 340, 464, 503, 521, 721
NmuCI	GTSAC	3 cut(s)	131, 222, 720
NsbI	TGCGCA	1 cut(s)	325
NspI	RCATGY	1 cut(s)	464
PaeR7I	CTCGAG	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	276, 589
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PspEI	GGTNACC	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	698
RsaI	GTAC	3 cut(s)	59, 284, 532
RsaNI	GTAC	3 cut(s)	58, 283, 531
SaqAI	TTAA	1 cut(s)	573
Sau3AI	GATC	2 cut(s)	679, 693
ScaI	AGTACT	2 cut(s)	59, 532
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	228, 229
SduI	GDGCHC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	430
Sfr274I	CTCGAG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	217
SmaI	CCCGGG	1 cut(s)	229
SmlI	CTYRAG	3 cut(s)	47, 217, 572
SmoI	CTYRAG	3 cut(s)	47, 217, 572
Sse9I	AATT	5 cut(s)	454, 545, 561, 653, 712
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	3 cut(s)	534, 558, 567
StyD4I	CCNGG	2 cut(s)	226, 227
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	155, 599
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	4 cut(s)	138, 218, 306, 376
TasI	AATT	5 cut(s)	454, 545, 561, 653, 712
TatI	WGTACW	2 cut(s)	57, 530
TfiI	GAWTC	2 cut(s)	276, 589
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	158, 675
TseFI	GTSAC	3 cut(s)	131, 222, 720
Tsp45I	GTSAC	3 cut(s)	131, 222, 720
TspDTI	ATGAA	2 cut(s)	17, 706
TspGWI	ACGGA	1 cut(s)	433
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	2 cut(s)	158, 675
Vha464I	CTTAAG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	561, 712
XceI	RCATGY	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	534, 558, 567
ZrmI	AGTACT	2 cut(s)	59, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.