Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003600

Physical Location & Seq

Genomic Coordinates Reverse (-)

7058930 .. 7060573

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCAGATTGGTCCTTGCTTCCGAATGACTTACTAGAACTAATCGTGGGTCATCTTGAGACATCTTTCGAGATTGTCCTCTTCCGTTCCGTCTGCAGGTCATGGCGGTCTGTTGTACCTCCACTAGATCATTCCCGCTGTTTAGGTATCAAAACTCATGATATATCGTTCAATGCCGGTTTTACGTTCAGCGATCAACCAACGGATCAACCTCCGTTTAAAAGTAGTGTTGATTGCACACTAAAAAACATCCCAATTTATCTTGTGAAATTCTGGACTCCGTATGGTGATGATTATTTAATAGCAGAGATGCGTGAACGAGAGGGTGGGGAACCGAAGTTATTGTTGTCGCCCTTGTCATCTAATCGTATTATATATGGAATGGGAATAAATAAAGTGTTGTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACTTTAAGAAGCAACCCATTCGTTACCGCTATGGATTACCCTATCATTTATGGAATGAAGTAGAGTGGGTAGAGACTTCCGAGAGAGTTGAATTTCTTAGACTGCATAGTGAAGATAGCAGAGATTTTGCGGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTGGACTCAAGTTGTGGAGCATCCTGAAACGTATGCATATCAAGATTTGGTTGCATTCAAAGGAAAGTTTTATGCTCTTGATTCAAGTGGAAGGGGACGTGTCTTTGTTGTCGAACTTTCTTTGAGAGTTACGGAGATCCCCTCAGTCAAAGGATCGCAATATTGTTCTAAAGAAAGTCTGGTGCAGTTAGGCGAAGAGTTGTTGCTAGTGCAACGGTTCATACCTGCAGGGCGGCGTTATGATGAATATATATATACATGGTTCAAAGTGTTTAGACTTGATGAAGAAGGAGGGAAGAGAAAGTGGGTTCAAGTTAATTACTTGAACGACCGAGTGATCTTTCTTGGAGCTCGGACGAAACTCTGCTGCTCGGTACATAAGCTCCCAGGTGCAAATGAGAATTGCATTGTGTTCCTTGCTTCAAATGATGGTTCTATCTTTGACAATGATTCAGTCCTTTTGTTTGACCTAAAAACCAGAAGAACTAATACTGCGTTTAATGAATGCAAAGGCTACATGGGGGTGTTCGGCGCGAATCTTAAATCTTTGGTGTCTTGTGGACTTGTGACCATTCCAAACCCAACGACAAGATTTCTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

415

Amino Acids

47.83

Weight (kDa)

7.95

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 39	4.5e-06	F-box domain
Beta-prop_KIB1-4	PF03478	189 - 363	3.6e-29	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16290 AT2G16300 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT4G34550 AT4G34550
fragaria_vesca	FvH4_2g09190 FvH4_2g09190 FvH4_2g09190 FvH4_2g09190
malus_domestica	MD05G1064100.v1.1 MD10G1072800.v1.1
prunus_persica	Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1
pyrus_communis	pycom05g05530 pycom10g05750
rosa_chinensis	RchiOBHm_Chr6g0265031
rosa_laevigata	RLG00000014214
rosa_multiflora	Rmu_sc0002934.1_g000016 Rmu_sc0011803.1_g000002 Rmu_sc0042979.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432110 Rroxscaffold_7G00203080
rosa_rugosa	Rorug06G0013500 Rorug06G0013600
rosa_samantha	Rh6AG136300 Rh6BG133200 Rh6CG131700 Rh6DG119000
rosa_wichuraiana	Rw6G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	87, 877
AccII	CGCG	1 cut(s)	1178
AciI	CCGC	5 cut(s)	106, 136, 484, 587, 877
AclWI	GGATC	3 cut(s)	213, 775, 805
AcsI	RAATTY	2 cut(s)	269, 548
AfaI	GTAC	2 cut(s)	117, 1020
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	9 cut(s)	172, 406, 548, 703, 729, 910, 956, 970, 1068
AjiI	CACGTC	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	1030
AluBI	AGCT	2 cut(s)	995, 1027
AluI	AGCT	2 cut(s)	995, 1027
Alw21I	GWGCWC	1 cut(s)	997
Alw26I	GTCTC	2 cut(s)	53, 524
AlwI	GGATC	3 cut(s)	213, 775, 805
ApeKI	GCWGC	1 cut(s)	1011
ApoI	RAATTY	2 cut(s)	269, 548
AspLEI	GCGC	1 cut(s)	1178
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	3 cut(s)	299, 411, 631
AvaII	GGWCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	997
BarI	GAAGNNNNNNTAC	2 cut(s)	1117, 1149
Bbv12I	GWGCWC	1 cut(s)	997
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	1 cut(s)	1067
BceAI	ACGGC	1 cut(s)	618
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	1 cut(s)	1032
BcoDI	GTCTC	2 cut(s)	53, 524
BfaI	CTAG	3 cut(s)	35, 125, 851
BfmI	CTRYAG	2 cut(s)	94, 870
BfuAI	ACCTGC	2 cut(s)	87, 877
BisI	GCNGC	2 cut(s)	878, 1012
BlsI	GCNGC	2 cut(s)	879, 1013
Bme1390I	CCNGG	1 cut(s)	1032
Bme18I	GGWCC	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	1032
BmsI	GCATC	2 cut(s)	300, 673
BplI	GAGNNNNNCTC	4 cut(s)	634, 666, 770, 802
BpuEI	CTTGAG	2 cut(s)	77, 636
BsaJI	CCNNGG	1 cut(s)	1030
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	1032
BseDI	CCNNGG	1 cut(s)	1030
BseGI	GGATG	2 cut(s)	249, 664
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	801
BseXI	GCAGC	1 cut(s)	998
BsgI	GTGCAG	1 cut(s)	848
Bsh1236I	CGCG	1 cut(s)	1178
Bsh1285I	CGRYCG	1 cut(s)	976
BsiEI	CGRYCG	1 cut(s)	976
BsiHKAI	GWGCWC	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	53, 524
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	2 cut(s)	698, 1154
Bsp1286I	GDGCHC	1 cut(s)	997
Bsp143I	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
BspACI	CCGC	5 cut(s)	106, 136, 484, 587, 877
BspCNI	CTCAG	1 cut(s)	800
BspFNI	CGCG	1 cut(s)	1178
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	2 cut(s)	98, 874
BspMI	ACCTGC	2 cut(s)	87, 877
BspPI	GGATC	3 cut(s)	213, 775, 805
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	1030
BssMI	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
Bst2UI	CCWGG	1 cut(s)	1032
Bst4CI	ACNGT	1 cut(s)	861
Bst6I	CTCTTC	3 cut(s)	86, 834, 935
BstDEI	CTNAG	2 cut(s)	554, 787
BstF5I	GGATG	2 cut(s)	249, 664
BstFNI	CGCG	1 cut(s)	1178
BstHHI	GCGC	1 cut(s)	1178
BstKTI	GATC	6 cut(s)	130, 196, 208, 783, 800, 984
BstMAI	GTCTC	2 cut(s)	53, 524
BstMBI	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
BstMCI	CGRYCG	1 cut(s)	976
BstNI	CCWGG	1 cut(s)	1032
BstSCI	CCNGG	1 cut(s)	1030
BstSFI	CTRYAG	2 cut(s)	94, 870
BstUI	CGCG	1 cut(s)	1178
BstV1I	GCAGC	1 cut(s)	998
BstX2I	RGATCY	1 cut(s)	780
BstYI	RGATCY	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	743
BtsCI	GGATG	2 cut(s)	249, 664
BveI	ACCTGC	2 cut(s)	87, 877
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	1 cut(s)	1178
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	116, 1019
CviAII	CATG	5 cut(s)	102, 158, 640, 903, 1162
CviJI	RGCY	4 cut(s)	633, 995, 1027, 1158
CviKI_1	RGCY	4 cut(s)	633, 995, 1027, 1158
CviQI	GTAC	2 cut(s)	116, 1019
DdeI	CTNAG	2 cut(s)	554, 787
DpnI	GATC	6 cut(s)	129, 195, 207, 782, 799, 983
DpnII	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	86, 834, 935
EarI	CTCTTC	3 cut(s)	86, 834, 935
Ecl136II	GAGCTC	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	997
Eco47I	GGWCC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	995
EcoICRI	GAGCTC	1 cut(s)	995
EcoRII	CCWGG	1 cut(s)	1030
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	997
FaeI	CATG	5 cut(s)	105, 161, 643, 906, 1165
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	5 cut(s)	101, 157, 639, 902, 1161
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	878, 1012
FokI	GGATG	2 cut(s)	236, 651
FriOI	GRGCYC	1 cut(s)	997
Fsp4HI	GCNGC	2 cut(s)	878, 1012
FspBI	CTAG	3 cut(s)	35, 125, 851
GlaI	GCGC	1 cut(s)	1177
GluI	GCNGC	2 cut(s)	878, 1012
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	1178
Hin1II	CATG	5 cut(s)	105, 161, 643, 906, 1165
Hin6I	GCGC	1 cut(s)	1176
HinP1I	GCGC	1 cut(s)	1176
HinfI	GANTC	5 cut(s)	277, 649, 725, 1094, 1180
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	3 cut(s)	299, 411, 631
Hpy166II	GTNNAC	2 cut(s)	317, 1205
Hpy188I	TCNGA	3 cut(s)	24, 538, 999
Hpy188III	TCNNGA	7 cut(s)	56, 70, 158, 274, 668, 686, 722
Hpy8I	GTNNAC	2 cut(s)	317, 1205
HpyAV	CCTTC	2 cut(s)	729, 926
HpyCH4III	ACNGT	1 cut(s)	861
HpyCH4IV	ACGT	3 cut(s)	185, 674, 742
HpyF3I	CTNAG	2 cut(s)	554, 787
HpySE526I	ACGT	3 cut(s)	185, 674, 742
Hsp92II	CATG	5 cut(s)	105, 161, 643, 906, 1165
HspAI	GCGC	1 cut(s)	1176
Kzo9I	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
LmnI	GCTCC	3 cut(s)	661, 992, 1032
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	2 cut(s)	300, 673
MaeI	CTAG	3 cut(s)	35, 125, 851
MaeII	ACGT	3 cut(s)	185, 674, 742
MaeIII	GTNAC	4 cut(s)	479, 635, 772, 1210
MalI	GATC	6 cut(s)	129, 195, 207, 782, 799, 983
MboI	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
MboII	GAAGA	7 cut(s)	73, 581, 615, 851, 941, 952, 1137
MflI	RGATCY	1 cut(s)	780
MhlI	GDGCHC	1 cut(s)	997
MluCI	AATT	7 cut(s)	255, 269, 423, 548, 613, 961, 1045
MlyI	GAGTC	2 cut(s)	271, 643
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	7 cut(s)	89, 129, 222, 316, 427, 796, 929
Mph1103I	ATGCAT	1 cut(s)	682
MseI	TTAA	6 cut(s)	219, 299, 462, 960, 1143, 1185
MslI	CAYNNNNRTG	1 cut(s)	1166
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	1032
Mva1269I	GAATGC	2 cut(s)	698, 1154
MvaI	CCWGG	1 cut(s)	1032
MvnI	CGCG	1 cut(s)	1178
NdeII	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
NlaIII	CATG	5 cut(s)	105, 161, 643, 906, 1165
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	1210
NsiI	ATGCAT	1 cut(s)	682
PagI	TCATGA	1 cut(s)	157
PctI	GAATGC	2 cut(s)	698, 1154
PfeI	GAWTC	3 cut(s)	725, 1094, 1180
PkrI	GCNGC	2 cut(s)	879, 1013
PleI	GAGTC	2 cut(s)	271, 643
PpsI	GAGTC	2 cut(s)	271, 643
Psp124BI	GAGCTC	1 cut(s)	997
Psp6I	CCWGG	1 cut(s)	1030
PspGI	CCWGG	1 cut(s)	1030
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	98, 874
PsuI	RGATCY	1 cut(s)	780
RsaI	GTAC	2 cut(s)	117, 1020
RsaNI	GTAC	2 cut(s)	116, 1019
RseI	CAYNNNNRTG	1 cut(s)	1166
SacI	GAGCTC	1 cut(s)	997
SaqAI	TTAA	6 cut(s)	219, 299, 462, 960, 1143, 1185
SatI	GCNGC	2 cut(s)	878, 1012
Sau3AI	GATC	6 cut(s)	127, 193, 205, 780, 797, 981
Sau96I	GGNCC	1 cut(s)	12
SbfI	CCTGCAGG	1 cut(s)	874
SchI	GAGTC	2 cut(s)	271, 643
ScrFI	CCNGG	1 cut(s)	1032
SdaI	CCTGCAGG	1 cut(s)	874
SduI	GDGCHC	1 cut(s)	997
SfaNI	GCATC	2 cut(s)	300, 673
SfcI	CTRYAG	2 cut(s)	94, 870
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	1166
SmlI	CTYRAG	2 cut(s)	56, 651
SmoI	CTYRAG	2 cut(s)	56, 651
Sse8387I	CCTGCAGG	1 cut(s)	874
Sse9I	AATT	7 cut(s)	255, 269, 423, 548, 613, 961, 1045
SsiI	CCGC	5 cut(s)	106, 136, 484, 587, 877
SspI	AATATT	1 cut(s)	806
SspMI	CTAG	3 cut(s)	35, 125, 851
SstI	GAGCTC	1 cut(s)	997
StyD4I	CCNGG	1 cut(s)	1030
TaaI	ACNGT	1 cut(s)	861
TaiI	ACGT	3 cut(s)	188, 677, 745
TaqI	TCGA	2 cut(s)	69, 756
TaqII	GACCGA	1 cut(s)	990
TasI	AATT	7 cut(s)	255, 269, 423, 548, 613, 961, 1045
TauI	GCSGC	1 cut(s)	880
TfiI	GAWTC	3 cut(s)	725, 1094, 1180
Tru1I	TTAA	6 cut(s)	219, 299, 462, 960, 1143, 1185
Tru9I	TTAA	6 cut(s)	219, 299, 462, 960, 1143, 1185
TseFI	GTSAC	1 cut(s)	1210
TseI	GCWGC	1 cut(s)	1011
Tsp45I	GTSAC	1 cut(s)	1210
TspDTI	ATGAA	5 cut(s)	528, 853, 903, 942, 1161
TspGWI	ACGGA	6 cut(s)	74, 79, 204, 218, 270, 791
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	2 cut(s)	269, 548
XspI	CTAG	3 cut(s)	35, 125, 851
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.