Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003600

Physical Location & Seq

Genomic Coordinates Reverse (-)

7061629 .. 7063367

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAGATTGGTCCTTGCTTCCGAATGACTTACTAGAACTAATCGTGGGTCATCTTGAGACATCTTTCGAGATTGTCCTCTTCCGATCCGTCTGCAGCTCATGGCGGTCTGTTGTACCTCCACAAGATCAATCCCGCTGCTTAAGTATCAAAACTCATGATATATCATTCAATGCCGGGTTTTCGTTCAGCGGCCAACCAACGGATCATCCTCTGTTTGGAAGCACACTAACAAAGATCCCAATTTATCTAGTGAAATTCTGGACTCCGTTTGGTGATGATTATTTATTGGCAGAGATGCGTGAACGAGAGGGTGGGGAACCGATGTTTTTGTTGTCGCCCTTGTCATCTAATCGTATTATATATGGAATGGGAATAAATAAAGTGTTGTTCAACTCTCTTACCTCACCAATTATCCCATTTGGACAATACTACGAGATAACCTACTCTGAGAAGCAACCCATTCGTTACCGCTATGGATTACCCTGTCATTTATGGGATAAATTAGAGTGGGTGGAGATTACCGAGAGAGTTGAATTTCTTAAACTGGATAGTGAAGATAGCAGAGATTTTGCGGTGCTTTTTGCTGGAAGAATGTGCAATTTGGTGATGTATAGAAGCCGTAACATGAGTTGGACTCAAGTTGTGGAGCATCCTGAAAAGTATGCATATCAAGATTTGGTTGCATTCAAAGGAAAGTTTTATGCTCTTGATTCAAGTGGAAGGGGACGGGTCTTTGTTGTCGAACTTTCTTTGGAAGTTATGGAGATCCCCTCAGTCAGAGGATCACAACAGTCTTCTAAAGAAAATCTGGTGCTGTCAGGCGAGGAGTTGTTGCTAGTGCAACGGTTCACCCCTGAAGTGCGGCATTATGATGAATATCTATATACATGGTTCAGAGTGTTTAGACTTGATGAAGAGGAGGGAAGAGAAAGTGGGTTCAAGTTAATGACTCTAACGACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0034645 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

322

Amino Acids

37.46

Weight (kDa)

5.18

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	145 - 308	3.7e-16	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16290 AT2G16300 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT4G34550 AT4G34550
fragaria_vesca	FvH4_2g09190 FvH4_2g09190 FvH4_2g09190 FvH4_2g09190
malus_domestica	MD05G1064100.v1.1 MD10G1072800.v1.1
prunus_persica	Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1
pyrus_communis	pycom05g05530 pycom10g05750
rosa_chinensis	RchiOBHm_Chr6g0265031
rosa_laevigata	RLG00000014214
rosa_multiflora	Rmu_sc0002934.1_g000016 Rmu_sc0011803.1_g000002 Rmu_sc0042979.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432110 Rroxscaffold_7G00203080
rosa_rugosa	Rorug06G0013500 Rorug06G0013600
rosa_samantha	Rh6AG136300 Rh6BG133200 Rh6CG131700 Rh6DG119000
rosa_wichuraiana	Rw6G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	106, 136, 192, 472, 575, 865
AclWI	GGATC	5 cut(s)	81, 213, 232, 763, 793
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	257, 536
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	202, 218
AflII	CTTAAG	1 cut(s)	142
AgsI	TTSAA	6 cut(s)	172, 394, 536, 691, 717, 943
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	5 cut(s)	81, 213, 232, 763, 793
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	96, 138
ApoI	RAATTY	2 cut(s)	257, 536
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	287, 399, 619, 844
AvaII	GGWCC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	108, 125
BceAI	ACGGC	1 cut(s)	606
BcgI	CGANNNNNNTGC	4 cut(s)	75, 109, 446, 480
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	35, 251, 839
BfmI	CTRYAG	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	142
BisI	GCNGC	4 cut(s)	97, 139, 193, 866
BlsI	GCNGC	4 cut(s)	98, 140, 194, 867
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	288, 661
BpiI	GAAGAC	1 cut(s)	789
BplI	GAGNNNNNCTC	4 cut(s)	622, 654, 758, 790
BpuEI	CTTGAG	2 cut(s)	77, 624
BpuMI	CCSGG	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	879
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 218
Bse1I	ACTGG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	879
BseGI	GGATG	2 cut(s)	208, 652
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	2 cut(s)	202, 218
BseMII	CTCAG	2 cut(s)	441, 789
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	2 cut(s)	842, 935
BseXI	GCAGC	2 cut(s)	108, 125
Bsh1285I	CGRYCG	1 cut(s)	963
BshFI	GGCC	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	963
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	2 cut(s)	202, 218
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	741
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
BspACI	CCGC	6 cut(s)	106, 136, 192, 472, 575, 865
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	442, 788
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	5 cut(s)	81, 213, 232, 763, 793
BspTI	CTTAAG	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	552
BssMI	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
Bst4CI	ACNGT	2 cut(s)	795, 849
Bst6I	CTCTTC	3 cut(s)	86, 912, 922
BstAFI	CTTAAG	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	450, 775
BstF5I	GGATG	2 cut(s)	208, 652
BstKTI	GATC	6 cut(s)	89, 130, 208, 240, 771, 788
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
BstMCI	CGRYCG	1 cut(s)	963
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	108, 125
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	2 cut(s)	237, 768
BstYI	RGATCY	2 cut(s)	237, 768
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	208, 652
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	4 cut(s)	102, 158, 628, 891
CviJI	RGCY	3 cut(s)	99, 195, 621
CviKI_1	RGCY	3 cut(s)	99, 195, 621
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	450, 775
DpnI	GATC	6 cut(s)	88, 129, 207, 239, 770, 787
DpnII	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	86, 912, 922
EarI	CTCTTC	3 cut(s)	86, 912, 922
Eco47I	GGWCC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	879
EcoT22I	ATGCAT	1 cut(s)	670
FaeI	CATG	4 cut(s)	105, 161, 631, 894
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	4 cut(s)	101, 157, 627, 890
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	4 cut(s)	97, 139, 193, 866
FokI	GGATG	2 cut(s)	195, 639
Fsp4HI	GCNGC	4 cut(s)	97, 139, 193, 866
FspBI	CTAG	3 cut(s)	35, 251, 839
GluI	GCNGC	4 cut(s)	97, 139, 193, 866
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	4 cut(s)	105, 161, 631, 894
HinfI	GANTC	4 cut(s)	265, 637, 713, 952
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	4 cut(s)	287, 399, 619, 844
Hpy166II	GTNNAC	2 cut(s)	305, 852
Hpy188I	TCNGA	5 cut(s)	24, 86, 451, 782, 899
Hpy188III	TCNNGA	7 cut(s)	56, 70, 158, 262, 656, 674, 710
Hpy8I	GTNNAC	2 cut(s)	305, 852
HpyAV	CCTTC	1 cut(s)	717
HpyCH4III	ACNGT	2 cut(s)	795, 849
HpyCH4V	TGCA	5 cut(s)	96, 600, 668, 686, 844
HpyF3I	CTNAG	2 cut(s)	450, 775
Hsp92II	CATG	4 cut(s)	105, 161, 631, 894
Kzo9I	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
LmnI	GCTCC	1 cut(s)	649
LpnPI	CCDG	9 cut(s)	190, 247, 499, 533, 573, 669, 797, 807, 870
Lsp1109I	GCAGC	2 cut(s)	108, 125
LweI	GCATC	2 cut(s)	288, 661
MaeI	CTAG	3 cut(s)	35, 251, 839
MaeIII	GTNAC	2 cut(s)	467, 623
MalI	GATC	6 cut(s)	88, 129, 207, 239, 770, 787
MboI	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
MboII	GAAGA	6 cut(s)	73, 569, 603, 789, 929, 939
MflI	RGATCY	2 cut(s)	237, 768
MluCI	AATT	6 cut(s)	243, 257, 411, 503, 536, 601
MlyI	GAGTC	3 cut(s)	259, 631, 946
MmeI	TCCRAC	1 cut(s)	614
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	3 cut(s)	143, 543, 947
MslI	CAYNNNNRTG	1 cut(s)	873
MspA1I	CMGCKG	2 cut(s)	138, 192
MspCI	CTTAAG	1 cut(s)	142
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
NlaIII	CATG	4 cut(s)	105, 161, 631, 894
NlaIV	GGNNCC	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	670
PagI	TCATGA	1 cut(s)	157
PctI	GAATGC	1 cut(s)	686
PfeI	GAWTC	1 cut(s)	713
PkrI	GCNGC	4 cut(s)	98, 140, 194, 867
PleI	GAGTC	3 cut(s)	259, 631, 946
PpsI	GAGTC	3 cut(s)	259, 631, 946
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	237, 768
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	143, 543, 947
SatI	GCNGC	4 cut(s)	97, 139, 193, 866
Sau3AI	GATC	6 cut(s)	86, 127, 205, 237, 768, 785
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	3 cut(s)	259, 631, 946
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	4 cut(s)	101, 121, 407, 446
SfaNI	GCATC	2 cut(s)	288, 661
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	3 cut(s)	56, 142, 639
SmoI	CTYRAG	3 cut(s)	56, 142, 639
Sse9I	AATT	6 cut(s)	243, 257, 411, 503, 536, 601
SsiI	CCGC	6 cut(s)	106, 136, 192, 472, 575, 865
SspMI	CTAG	3 cut(s)	35, 251, 839
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	795, 849
TaqI	TCGA	2 cut(s)	69, 744
TasI	AATT	6 cut(s)	243, 257, 411, 503, 536, 601
TauI	GCSGC	2 cut(s)	195, 868
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	3 cut(s)	143, 543, 947
Tru9I	TTAA	3 cut(s)	143, 543, 947
TseI	GCWGC	2 cut(s)	96, 138
TspDTI	ATGAA	2 cut(s)	891, 930
TspGWI	ACGGA	3 cut(s)	79, 218, 258
Vha464I	CTTAAG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	2 cut(s)	257, 536
XspI	CTAG	3 cut(s)	35, 251, 839
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.