Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042979.1

Orthogroup ID

OG0003600

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 630

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042979.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtctgattgcgtggttcgatcatatccggagagtgaaggaacaaatgagcaaacttgtgaatctgtctggatggctcattggatgtgcccaagctgcaattcagaaaccaaggcatgtggtcatgtatcaattcattatgaggaagcccagaaacacaatgatggtgttcagaagcatccgttgtttcgaggatttggagaagtagctgaacctaaaagagtgaggaaaaacaatgagggtgtcactctgatagagagttcaaagaaattaaggaaggagagattggaaggccagtcctttccaatgttcaatgttcctcagaaaactagtttggctaaacagaatcagcaagattcgactgtcaataggagattactaagtgagagtaactcatctgcaatgctgcgatgggcgcctgctgatgcgcggcctctggaagctatcccacccctaaaagaacaacaggtgaaatatcataattttcttgaggacagcagcccagctgtttccaagtcttttcaggatggaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007610 GO:0007622 GO:0007623 GO:0008150 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048512 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0080167 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.13

Weight (kDa)

7.01

Isoelectric Point (pI)

75.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16290 AT2G16300 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT4G34550 AT4G34550
fragaria_vesca	FvH4_2g09190 FvH4_2g09190 FvH4_2g09190 FvH4_2g09190
malus_domestica	MD05G1064100.v1.1 MD10G1072800.v1.1
prunus_persica	Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1
pyrus_communis	pycom05g05530 pycom10g05750
rosa_chinensis	RchiOBHm_Chr6g0265031
rosa_laevigata	RLG00000014214
rosa_multiflora	Rmu_sc0002934.1_g000016 Rmu_sc0011803.1_g000002 Rmu_sc0042979.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432110 Rroxscaffold_7G00203080
rosa_rugosa	Rorug06G0013500 Rorug06G0013600
rosa_samantha	Rh6AG136300 Rh6BG133200 Rh6CG131700 Rh6DG119000
rosa_wichuraiana	Rw6G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccII	CGCG	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	264, 313
AhlI	ACTAGT	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	6 cut(s)	85, 117, 269, 301, 317, 349
AluBI	AGCT	4 cut(s)	96, 209, 443, 506
AluI	AGCT	4 cut(s)	96, 209, 443, 506
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	2 cut(s)	292, 431
ApeKI	GCWGC	3 cut(s)	96, 406, 498
AspLEI	GCGC	2 cut(s)	418, 430
AspS9I	GGNCC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	415
BbvI	GCAGC	3 cut(s)	83, 393, 510
BccI	CCATC	4 cut(s)	67, 158, 405, 521
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	419
BisI	GCNGC	4 cut(s)	97, 407, 431, 499
BlsI	GCNGC	4 cut(s)	98, 408, 432, 500
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	417
BmsI	GCATC	2 cut(s)	187, 415
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpuEI	CTTGAG	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	4 cut(s)	78, 90, 178, 532
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	83, 393, 510
BseYI	CCCAGC	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	294, 433
BshNI	GGYRCC	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	29
BsnI	GGCC	2 cut(s)	294, 433
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	2 cut(s)	294, 433
BspCNI	CTCAG	1 cut(s)	334
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	321, 380
BstF5I	GGATG	4 cut(s)	78, 90, 178, 532
BstFNI	CGCG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	2 cut(s)	418, 430
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 415
BstNSI	RCATGY	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	3 cut(s)	83, 393, 510
BsuRI	GGCC	2 cut(s)	294, 433
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	4 cut(s)	78, 90, 178, 532
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	2 cut(s)	418, 430
Cfr13I	GGNCC	1 cut(s)	530
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	2 cut(s)	117, 125
DdeI	CTNAG	2 cut(s)	321, 380
DinI	GGCGCC	1 cut(s)	417
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	417
EheI	GGCGCC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	120, 128
FaiI	YATR	5 cut(s)	25, 118, 126, 141, 480
FatI	CATG	2 cut(s)	116, 124
Fnu4HI	GCNGC	4 cut(s)	97, 407, 431, 499
FokI	GGATG	3 cut(s)	85, 97, 165
Fsp4HI	GCNGC	4 cut(s)	97, 407, 431, 499
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	2 cut(s)	417, 429
GluI	GCNGC	4 cut(s)	97, 407, 431, 499
GsaI	CCCAGC	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	294, 433
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	2 cut(s)	418, 430
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	120, 128
Hin6I	GCGC	2 cut(s)	416, 428
HinP1I	GCGC	2 cut(s)	416, 428
HinfI	GANTC	3 cut(s)	62, 346, 356
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	481
Hpy188I	TCNGA	5 cut(s)	7, 106, 174, 252, 324
Hpy188III	TCNNGA	5 cut(s)	29, 70, 437, 488, 524
HpyAV	CCTTC	3 cut(s)	32, 271, 284
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	99, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 415
HpyF3I	CTNAG	2 cut(s)	321, 380
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	2 cut(s)	120, 128
HspAI	GCGC	2 cut(s)	416, 428
KasI	GGCGCC	1 cut(s)	415
Kpn2I	TCCGGA	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	9 cut(s)	42, 55, 164, 308, 422, 432, 452, 509, 516
Lsp1109I	GCAGC	3 cut(s)	83, 393, 510
LweI	GCATC	2 cut(s)	187, 415
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	244, 389
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	100, 132, 269, 481
Mly113I	GGCGCC	1 cut(s)	416
MnlI	CCTC	7 cut(s)	136, 185, 219, 232, 330, 444, 484
MroI	TCCGGA	1 cut(s)	28
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	96, 415
NarI	GGCGCC	1 cut(s)	416
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	120, 128
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	62, 346, 356
PkrI	GCNGC	4 cut(s)	98, 408, 432, 500
PluTI	GGCGCC	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	4 cut(s)	97, 407, 431, 499
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	98, 211, 217, 445, 471, 508
SfaNI	GCATC	2 cut(s)	187, 415
SfoI	GGCGCC	1 cut(s)	417
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	4 cut(s)	100, 132, 269, 481
SsiI	CCGC	1 cut(s)	430
SspDI	GGCGCC	1 cut(s)	415
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	19, 190, 359
TasI	AATT	4 cut(s)	100, 132, 269, 481
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	3 cut(s)	62, 346, 356
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	96, 406, 498
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	530
XceI	RCATGY	1 cut(s)	120
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.