Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003600

Physical Location & Seq

Genomic Coordinates Forward (+)

1802968 .. 1807630

Gene Structure 4663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAGTTTAAAGGCACCAAATGTGCAAGACATGGTGAGGAGTGACCCTTTTCACATCCCTGATTCATTCCTTGCAATCAGGAATGAAGAAGACGAGCCAAAGAGTGCAGATGCGTCTCGTGATCTCTGTTCTGAGATTCCTATCATTGATTTTACTCTGCTTTCGAAAGGGCAGAAGGAGGAGCTTAACAAACTGGACCTGGCTTGCAAAGAATGGGGATTCTTTCAGGTGGTAAACCATGGAGTAGAAACACAGGTGTTGCAGGGAATGAAGGATGCTGCTGCGAAATTCTTTGACCTTCCATTAGAAGAGAAGAACAAAATTAGTATGTCACTGGATGAGTTTCAAGGCTACGGGCAAGCCTATGCTGCTGCCGAAGGGCAGACCCTTGACTGGTCTGACACACTGTTTCTCAGTGTTTATCCATCTCATAGTAGAAACCTTAAGTTTTGGCCAACATCACCAAAAGGATTCAAGGAAGCAATTGAGGCATATTCTACTGAAGTTAAAAGGATTGGAGAGGAGCTCTTAGGGTCTATCTCTCAAATTATGGGGATGGAGAAGGATGCTCTTCTTGGATTTCATCAAGAGTTGGTCCAAGTTTTTCGTGTGACCTACTATCCTCCATGCTCCATGCCAGATAAAGTACTAGGCTTAAGTCCACACTCCGACACAAGCACCATAACCATACTCATGCAGGAAGACGATGTTACCGGATTACATATTCGAAAAGAAGGAAAATGGGTGCCGGTAGAGCCAATTCCAAATGCTTTCGTTGTCAATGTCGGAGATATGATTGAGATATGGAGTAATGGAAAGTACAAGAGCATTGAACATAGAGCTGTGACGAGCAAAAGCAAGGCAAGATTATCTTATGCAACATTTATAATTCCACGTAACGATGTTGAAGTTGGACCATTTAATCATTTAGTGGATCAGCCATCTCGAAAGTACAAGAAAGTCATATACGGAGAATATTTGAGGAGTTCCCTTAAGGGAAAACTTGAGGGGAAGTCGCACACTGAAACGGCAAAGATCGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007610 GO:0007622 GO:0007623 GO:0008150 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048512 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0080167 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

39.16

Weight (kDa)

5.68

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	46 - 153	1.5e-30	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	200 - 297	3.1e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16290 AT2G16300 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT4G34550 AT4G34550
fragaria_vesca	FvH4_2g09190 FvH4_2g09190 FvH4_2g09190 FvH4_2g09190
malus_domestica	MD05G1064100.v1.1 MD10G1072800.v1.1
prunus_persica	Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1
pyrus_communis	pycom05g05530 pycom10g05750
rosa_chinensis	RchiOBHm_Chr6g0265031
rosa_laevigata	RLG00000014214
rosa_multiflora	Rmu_sc0002934.1_g000016 Rmu_sc0011803.1_g000002 Rmu_sc0042979.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432110 Rroxscaffold_7G00203080
rosa_rugosa	Rorug06G0013500 Rorug06G0013600
rosa_samantha	Rh6AG136300 Rh6BG133200 Rh6CG131700 Rh6DG119000
rosa_wichuraiana	Rw6G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AccB1I	GGYRCC	2 cut(s)	13, 745
AclWI	GGATC	1 cut(s)	942
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	3 cut(s)	648, 821, 953
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflII	CTTAAG	3 cut(s)	443, 655, 992
AgsI	TTSAA	4 cut(s)	347, 475, 833, 908
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	184, 526, 842
AluI	AGCT	3 cut(s)	184, 526, 842
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	942
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	4 cut(s)	278, 281, 368, 371
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	196, 595, 914
AsuHPI	GGTGA	2 cut(s)	46, 453
AsuII	TTCGAA	2 cut(s)	164, 727
AvaII	GGWCC	3 cut(s)	196, 595, 914
BalI	TGGCCA	1 cut(s)	454
BanI	GGYRCC	2 cut(s)	13, 745
BanII	GRGCYC	1 cut(s)	528
BauI	CACGAG	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	96, 708
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	4 cut(s)	265, 268, 355, 358
BccI	CCATC	3 cut(s)	433, 550, 949
BceAI	ACGGC	1 cut(s)	1044
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	650
BfrI	CTTAAG	3 cut(s)	443, 655, 992
BisI	GCNGC	4 cut(s)	279, 282, 369, 372
BlsI	GCNGC	4 cut(s)	280, 283, 370, 373
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	3 cut(s)	196, 595, 914
BmgT120I	GGNCC	3 cut(s)	196, 595, 914
BmiI	GGNNCC	2 cut(s)	15, 747
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	100, 265, 556
BpiI	GAAGAC	2 cut(s)	96, 708
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
Bpu14I	TTCGAA	2 cut(s)	164, 727
BpuEI	CTTGAG	1 cut(s)	1025
BsaAI	YACGTR	1 cut(s)	896
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse118I	RCCGGY	1 cut(s)	748
Bse1I	ACTGG	3 cut(s)	198, 339, 398
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	5 cut(s)	54, 280, 343, 561, 571
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	123, 427
BseNI	ACTGG	3 cut(s)	198, 339, 398
BseRI	GAGGAG	4 cut(s)	52, 194, 536, 997
BseXI	GCAGC	4 cut(s)	265, 268, 355, 358
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	454
BshNI	GGYRCC	2 cut(s)	13, 745
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	714, 749
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	454
Bsp119I	TTCGAA	2 cut(s)	164, 727
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	121, 934, 1035
Bsp19I	CCATGG	1 cut(s)	238
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	2 cut(s)	124, 426
BspLI	GGNNCC	2 cut(s)	15, 747
BspPI	GGATC	1 cut(s)	942
BspQI	GCTCTTC	1 cut(s)	576
BspT104I	TTCGAA	2 cut(s)	164, 727
BspT107I	GGYRCC	2 cut(s)	13, 745
BspTI	CTTAAG	3 cut(s)	443, 655, 992
BsrFI	RCCGGY	1 cut(s)	748
BsrI	ACTGG	3 cut(s)	198, 339, 398
BssAI	RCCGGY	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	121, 934, 1035
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	408
Bst6I	CTCTTC	2 cut(s)	303, 576
BstAFI	CTTAAG	3 cut(s)	443, 655, 992
BstBAI	YACGTR	1 cut(s)	896
BstBI	TTCGAA	2 cut(s)	164, 727
BstC8I	GCNNGC	2 cut(s)	205, 360
BstDEI	CTNAG	3 cut(s)	132, 413, 529
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	5 cut(s)	54, 280, 343, 561, 571
BstKTI	GATC	3 cut(s)	124, 937, 1038
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	3 cut(s)	121, 934, 1035
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 488, 754
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	265, 268, 355, 358
BstV2I	GAAGAC	2 cut(s)	96, 708
BsuRI	GGCC	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	5 cut(s)	54, 280, 343, 561, 571
BtsIMutI	CAGTG	4 cut(s)	332, 404, 421, 1020
Cac8I	GCNNGC	2 cut(s)	205, 360
Cfr10I	RCCGGY	1 cut(s)	748
Cfr13I	GGNCC	3 cut(s)	196, 595, 914
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	647, 820, 952
CviAII	CATG	5 cut(s)	31, 239, 627, 634, 694
CviQI	GTAC	3 cut(s)	647, 820, 952
DdeI	CTNAG	3 cut(s)	132, 413, 529
DpnI	GATC	3 cut(s)	123, 936, 1037
DpnII	GATC	3 cut(s)	121, 934, 1035
DraI	TTTAAA	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	2 cut(s)	303, 576
EarI	CTCTTC	2 cut(s)	303, 576
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	3 cut(s)	196, 595, 914
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	5 cut(s)	34, 242, 630, 637, 697
FalI	AAGNNNNNCTT	2 cut(s)	856, 888
FatI	CATG	5 cut(s)	30, 238, 626, 633, 693
Fnu4HI	GCNGC	4 cut(s)	279, 282, 369, 372
FokI	GGATG	5 cut(s)	41, 287, 350, 568, 578
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	4 cut(s)	279, 282, 369, 372
FspBI	CTAG	1 cut(s)	650
GluI	GCNGC	4 cut(s)	279, 282, 369, 372
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	2 cut(s)	714, 749
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	5 cut(s)	34, 242, 630, 637, 697
HinfI	GANTC	4 cut(s)	62, 136, 219, 471
HpaII	CCGG	2 cut(s)	714, 749
HphI	GGTGA	2 cut(s)	46, 453
Hpy166II	GTNNAC	2 cut(s)	235, 662
Hpy188I	TCNGA	5 cut(s)	133, 400, 670, 788, 1040
Hpy188III	TCNNGA	4 cut(s)	79, 119, 587, 945
Hpy8I	GTNNAC	2 cut(s)	235, 662
HpyAV	CCTTC	6 cut(s)	169, 265, 308, 371, 556, 728
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	1 cut(s)	895
HpyCH4V	TGCA	7 cut(s)	25, 74, 107, 207, 262, 697, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 488, 754
HpyF3I	CTNAG	3 cut(s)	132, 413, 529
HpySE526I	ACGT	1 cut(s)	895
Hsp92II	CATG	5 cut(s)	34, 242, 630, 637, 697
Kzo9I	GATC	3 cut(s)	121, 934, 1035
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	3 cut(s)	181, 523, 635
Lsp1109I	GCAGC	4 cut(s)	265, 268, 355, 358
LweI	GCATC	3 cut(s)	100, 265, 556
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	895
MaeIII	GTNAC	6 cut(s)	41, 330, 610, 709, 844, 896
MalI	GATC	3 cut(s)	123, 936, 1037
MboI	GATC	3 cut(s)	121, 934, 1035
MboII	GAAGA	6 cut(s)	98, 101, 320, 325, 563, 713
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	6 cut(s)	287, 321, 483, 546, 759, 888
MluNI	TGGCCA	1 cut(s)	454
MmeI	TCCRAC	3 cut(s)	693, 766, 892
MnlI	CCTC	7 cut(s)	30, 172, 481, 514, 633, 975, 1000
Mox20I	TGGCCA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	8 cut(s)	8, 186, 444, 507, 656, 921, 993, 1045
MslI	CAYNNNNRTG	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	454
MspCI	CTTAAG	3 cut(s)	443, 655, 992
MspI	CCGG	2 cut(s)	714, 749
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	368, 488, 754
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	121, 934, 1035
NlaIII	CATG	5 cut(s)	34, 242, 630, 637, 697
NlaIV	GGNNCC	2 cut(s)	15, 747
NmuCI	GTSAC	4 cut(s)	41, 330, 610, 844
NspV	TTCGAA	2 cut(s)	164, 727
PciSI	GCTCTTC	1 cut(s)	576
PfeI	GAWTC	4 cut(s)	62, 136, 219, 471
PkrI	GCNGC	4 cut(s)	280, 283, 370, 373
Ppu21I	YACGTR	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	887
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	15, 747
PspPI	GGNCC	3 cut(s)	196, 595, 914
RsaI	GTAC	3 cut(s)	648, 821, 953
RsaNI	GTAC	3 cut(s)	647, 820, 952
RseI	CAYNNNNRTG	1 cut(s)	692
SacI	GAGCTC	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	8 cut(s)	8, 186, 444, 507, 656, 921, 993, 1045
SatI	GCNGC	4 cut(s)	279, 282, 369, 372
Sau3AI	GATC	3 cut(s)	121, 934, 1035
Sau96I	GGNCC	3 cut(s)	196, 595, 914
ScaI	AGTACT	1 cut(s)	648
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	3 cut(s)	100, 265, 556
SfuI	TTCGAA	2 cut(s)	164, 727
SinI	GGWCC	3 cut(s)	196, 595, 914
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	4 cut(s)	443, 655, 992, 1004
SmoI	CTYRAG	4 cut(s)	443, 655, 992, 1004
Sse9I	AATT	6 cut(s)	287, 321, 483, 546, 759, 888
SspI	AATATT	1 cut(s)	977
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	1 cut(s)	898
TaqI	TCGA	3 cut(s)	164, 727, 946
TasI	AATT	6 cut(s)	287, 321, 483, 546, 759, 888
TatI	WGTACW	3 cut(s)	646, 819, 951
TfiI	GAWTC	4 cut(s)	62, 136, 219, 471
Tru1I	TTAA	8 cut(s)	8, 186, 444, 507, 656, 921, 993, 1045
Tru9I	TTAA	8 cut(s)	8, 186, 444, 507, 656, 921, 993, 1045
TscAI	CASTG	4 cut(s)	339, 411, 421, 1027
TseFI	GTSAC	4 cut(s)	41, 330, 610, 844
TseI	GCWGC	4 cut(s)	278, 281, 368, 371
Tsp45I	GTSAC	4 cut(s)	41, 330, 610, 844
TspDTI	ATGAA	4 cut(s)	54, 99, 284, 572
TspGWI	ACGGA	1 cut(s)	984
TspRI	CASTG	4 cut(s)	339, 411, 421, 1027
Vha464I	CTTAAG	3 cut(s)	443, 655, 992
VpaK11BI	GGWCC	3 cut(s)	196, 595, 914
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	650
ZrmI	AGTACT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.