Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003600

Physical Location & Seq

Genomic Coordinates Forward (+)

16502532 .. 16504254

Gene Structure 1723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCTGAACATTTTATGGGCTTAAGCAAGATTAAGACAGAAAGTTGTGTTCATGGTTATGAATCTGCCTGGTTGAGTCGTTGGACTCCTAGTAACAAAAATGCCAAGGAGATTCACCTACCAGAAGATGGTCACCTATTGAAAGAGTCAACAGGTCCCATGAAACTAAAAGGAAAAATGTTGACTCTATTTCCTAATCTTGATTCACCTGTTCAAAGTGTCGATGTAATACCTGACATGAACAAAGAACCACCTATTGTTGCGGACAGAGAAAACTCGATAGATGGGGAAGAAGAAGAAGCAAGCAGTCAAGCTACTCAAAGTAAGAATGTGGAACACTTTCTCAACAACAACACCAACTTGCTCAGAGAGTGCAAGCGTATATGGTCGGACTCTGAAACCAACAGTAGATCACAAGTCAAACGTCTGAAGACAAACGCAGCAGATAACAGGGGAAATGAAACCAAGAACATGATGGTTTTCGAAGAAGGACCATCAGGGAAGAAGGTGAACCACTTCTTCCACAGTATATTCGGAATGACCAATCTCGGATCAAGAAGATATCAAAAATTCTCCACATCACAAAACAAGAATCTGAATATGGGAGAAGCAGAAGACGTTAACCCATGGATTCAGAGATGGTGTAAGAGAAAAGCTGCAGACGTTCATGAACCAAGAGGAGGGCAAGAAGTTAACTCAAATGGCACTGTGCTAGAGAAGCAGCAGTTTCCAAGTATTGCAGCAATGGCAATGATGAGGAAGGCTCTGAGCGGTATAAACCCTACCGGTTGTAGAAAGACCAACTCCCTCTTCGTTTGGAATGCTGAGGATTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.5

Weight (kDa)

8.27

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16290 AT2G16300 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT2G16365 AT4G34550 AT4G34550
fragaria_vesca	FvH4_2g09190 FvH4_2g09190 FvH4_2g09190 FvH4_2g09190
malus_domestica	MD05G1064100.v1.1 MD10G1072800.v1.1
prunus_persica	Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1 Prupe.8G094200_v2.0.a1
pyrus_communis	pycom05g05530 pycom10g05750
rosa_chinensis	RchiOBHm_Chr6g0265031
rosa_laevigata	RLG00000014214
rosa_multiflora	Rmu_sc0002934.1_g000016 Rmu_sc0011803.1_g000002 Rmu_sc0042979.1_g000001
rosa_roxburghii	Rroxscaffold_175G00432110 Rroxscaffold_7G00203080
rosa_rugosa	Rorug06G0013500 Rorug06G0013600
rosa_samantha	Rh6AG136300 Rh6BG133200 Rh6CG131700 Rh6DG119000
rosa_wichuraiana	Rw6G011760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	771
AciI	CCGC	2 cut(s)	263, 771
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	128, 680
AflII	CTTAAG	1 cut(s)	22
AgeI	ACCGGT	1 cut(s)	785
AgsI	TTSAA	2 cut(s)	142, 215
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	2 cut(s)	314, 656
AluI	AGCT	2 cut(s)	314, 656
AlwI	GGATC	1 cut(s)	559
ApeKI	GCWGC	4 cut(s)	440, 656, 721, 740
ApoI	RAATTY	1 cut(s)	569
AsiGI	ACCGGT	1 cut(s)	785
Asp700I	GAANNNNTTC	2 cut(s)	339, 515
AspS9I	GGNCC	2 cut(s)	155, 491
AsuHPI	GGTGA	4 cut(s)	107, 125, 198, 520
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	155, 491
BbsI	GAAGAC	2 cut(s)	437, 621
BbvCI	CCTCAGC	1 cut(s)	825
BbvI	GCAGC	4 cut(s)	452, 643, 733, 752
BccI	CCATC	5 cut(s)	122, 278, 469, 502, 633
BciT130I	CCWGG	1 cut(s)	70
BfaI	CTAG	2 cut(s)	90, 713
BfmI	CTRYAG	1 cut(s)	657
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	4 cut(s)	441, 657, 722, 741
BlsI	GCNGC	4 cut(s)	442, 658, 723, 742
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	155, 491
BmgT120I	GGNCC	2 cut(s)	155, 491
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	437, 621
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
Bpu10I	CCTNAGC	1 cut(s)	825
Bpu14I	TTCGAA	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	105, 626
BsaWI	WCCGGW	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 680
Bse118I	RCCGGY	1 cut(s)	785
Bse3DI	GCAATG	2 cut(s)	750, 756
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	105, 626
BseLI	CCNNNNNNNGG	2 cut(s)	128, 680
BseMI	GCAATG	2 cut(s)	750, 756
BseMII	CTCAG	3 cut(s)	379, 758, 816
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	4 cut(s)	452, 643, 733, 752
BshTI	ACCGGT	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	786
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	128, 680
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	826
Bsp119I	TTCGAA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	410, 551
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	2 cut(s)	263, 771
BspCNI	CTCAG	3 cut(s)	378, 759, 817
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	559
BspT104I	TTCGAA	1 cut(s)	483
BspTI	CTTAAG	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	771
BsrDI	GCAATG	2 cut(s)	750, 756
BsrFI	RCCGGY	1 cut(s)	785
BssAI	RCCGGY	1 cut(s)	785
BssECI	CCNNGG	2 cut(s)	105, 626
BssMI	GATC	2 cut(s)	410, 551
BssT1I	CCWWGG	2 cut(s)	105, 626
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	407, 527, 709
Bst6I	CTCTTC	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	304, 377
BstDEI	CTNAG	3 cut(s)	365, 767, 825
BstDSI	CCRYGG	1 cut(s)	626
BstEII	GGTNACC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	413, 554
BstMBI	GATC	2 cut(s)	410, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	718, 746
BstNI	CCWGG	1 cut(s)	70
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	4 cut(s)	452, 643, 733, 752
BstV2I	GAAGAC	2 cut(s)	437, 621
BtgI	CCRYGG	1 cut(s)	626
BtsIMutI	CAGTG	1 cut(s)	705
Cac8I	GCNNGC	2 cut(s)	304, 377
CciI	TCATGA	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	785
Cfr13I	GGNCC	2 cut(s)	155, 491
CspAI	ACCGGT	1 cut(s)	785
CviAII	CATG	6 cut(s)	53, 160, 238, 472, 627, 668
CviJI	RGCY	4 cut(s)	21, 314, 656, 764
CviKI_1	RGCY	4 cut(s)	21, 314, 656, 764
DdeI	CTNAG	3 cut(s)	365, 767, 825
DpnI	GATC	2 cut(s)	412, 553
DpnII	GATC	2 cut(s)	410, 551
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
Eco130I	CCWWGG	2 cut(s)	105, 626
Eco32I	GATATC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	155, 491
Eco57I	CTGAAG	1 cut(s)	449
Eco91I	GGTNACC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	563
EcoT14I	CCWWGG	2 cut(s)	105, 626
ErhI	CCWWGG	2 cut(s)	105, 626
FaeI	CATG	6 cut(s)	56, 163, 241, 475, 630, 671
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	6 cut(s)	52, 159, 237, 471, 626, 667
Fnu4HI	GCNGC	4 cut(s)	441, 657, 722, 741
Fsp4HI	GCNGC	4 cut(s)	441, 657, 722, 741
FspBI	CTAG	2 cut(s)	90, 713
GluI	GCNGC	4 cut(s)	441, 657, 722, 741
HapII	CCGG	1 cut(s)	786
Hin1II	CATG	6 cut(s)	56, 163, 241, 475, 630, 671
HincII	GTYRAC	4 cut(s)	150, 183, 622, 694
HindII	GTYRAC	4 cut(s)	150, 183, 622, 694
HpaI	GTTAAC	2 cut(s)	622, 694
HpaII	CCGG	1 cut(s)	786
HphI	GGTGA	4 cut(s)	107, 125, 198, 520
Hpy166II	GTNNAC	5 cut(s)	150, 183, 511, 622, 694
Hpy188III	TCNNGA	3 cut(s)	200, 555, 668
Hpy8I	GTNNAC	5 cut(s)	150, 183, 511, 622, 694
HpyAV	CCTTC	3 cut(s)	482, 499, 754
HpyCH4III	ACNGT	3 cut(s)	407, 527, 709
HpyCH4IV	ACGT	3 cut(s)	424, 618, 663
HpyCH4V	TGCA	3 cut(s)	375, 659, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	718, 746
HpyF3I	CTNAG	3 cut(s)	365, 767, 825
HpySE526I	ACGT	3 cut(s)	424, 618, 663
Hsp92II	CATG	6 cut(s)	56, 163, 241, 475, 630, 671
KspAI	GTTAAC	2 cut(s)	622, 694
Kzo9I	GATC	2 cut(s)	410, 551
LpnPI	CCDG	9 cut(s)	55, 82, 135, 138, 222, 246, 436, 483, 799
Lsp1109I	GCAGC	4 cut(s)	452, 643, 733, 752
MaeI	CTAG	2 cut(s)	90, 713
MaeII	ACGT	3 cut(s)	424, 618, 663
MaeIII	GTNAC	2 cut(s)	92, 131
MalI	GATC	2 cut(s)	412, 553
MbiI	CCGCTC	1 cut(s)	771
MboI	GATC	2 cut(s)	410, 551
MluCI	AATT	1 cut(s)	569
MlyI	GAGTC	5 cut(s)	79, 85, 155, 178, 386
MmeI	TCCRAC	2 cut(s)	62, 369
MnlI	CCTC	5 cut(s)	671, 674, 750, 818, 820
MroXI	GAANNNNTTC	2 cut(s)	339, 515
MseI	TTAA	5 cut(s)	23, 33, 621, 693, 833
MslI	CAYNNNNRTG	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	786
MspR9I	CCNGG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	718, 746
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	2 cut(s)	410, 551
NlaIII	CATG	6 cut(s)	56, 163, 241, 475, 630, 671
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	1 cut(s)	667
PctI	GAATGC	1 cut(s)	826
PdmI	GAANNNNTTC	2 cut(s)	339, 515
PfeI	GAWTC	5 cut(s)	62, 112, 203, 592, 631
PflMI	CCANNNNNTGG	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	442, 658, 723, 742
PleI	GAGTC	5 cut(s)	79, 84, 154, 178, 386
PpsI	GAGTC	5 cut(s)	79, 84, 154, 178, 386
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	2 cut(s)	155, 491
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	5 cut(s)	23, 33, 621, 693, 833
SatI	GCNGC	4 cut(s)	441, 657, 722, 741
Sau3AI	GATC	2 cut(s)	410, 551
Sau96I	GGNCC	2 cut(s)	155, 491
SchI	GAGTC	5 cut(s)	79, 85, 155, 178, 386
ScrFI	CCNGG	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	657
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	2 cut(s)	155, 491
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	569
SsiI	CCGC	2 cut(s)	263, 771
SspMI	CTAG	2 cut(s)	90, 713
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	105, 626
TaaI	ACNGT	3 cut(s)	407, 527, 709
TaiI	ACGT	3 cut(s)	427, 621, 666
TaqI	TCGA	3 cut(s)	222, 278, 483
TasI	AATT	1 cut(s)	569
TfiI	GAWTC	5 cut(s)	62, 112, 203, 592, 631
Tru1I	TTAA	5 cut(s)	23, 33, 621, 693, 833
Tru9I	TTAA	5 cut(s)	23, 33, 621, 693, 833
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	4 cut(s)	440, 656, 721, 740
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	7 cut(s)	41, 75, 176, 254, 474, 656, 684
TspRI	CASTG	1 cut(s)	712
Van91I	CCANNNNNTGG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	155, 491
XapI	RAATTY	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmnI	GAANNNNTTC	2 cut(s)	339, 515
XspI	CTAG	2 cut(s)	90, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.