Nodulin-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G16660 AT2G16660 AT4G34950 |
| fragaria_vesca | FvH4_1g11700 FvH4_2g01480 |
| malus_domestica | MD02G1130000.v1.1 MD05G1119300.v1.1 MD10G1122400.v1.1 |
| prunus_persica | Prupe.7G169700_v2.0.a1 Prupe.8G163500_v2.0.a1 |
| pyrus_communis | pycom02g10190 pycom05g11320 pycom05g11330 pycom10g10530 |
| rosa_chinensis | RchiOBHm_Chr2g0099271 RchiOBHm_Chr6g0244111 |
| rosa_laevigata | RLG00000015380 RLG00000016867 |
| rosa_multiflora | Rmu_sc0001455.1_g000032 Rmu_sc0029692.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00143260 Rroxscaffold_7G00216060 |
| rosa_rugosa | Rorug02G0078300 Rorug05G0507500 |
| rosa_samantha | Rh2AG127600 Rh2BG130600 Rh2CG131800 Rh2DG132300 Rh6AG022000 Rh6BG017700 Rh6CG014400 Rh6DG015600 |
| rosa_wichuraiana | Rw2G009850 Rw6G001810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 183 |
| AccB1I | GGYRCC | 1 cut(s) | 544 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1463 |
| AciI | CCGC | 9 cut(s) | 62, 304, 386, 569, 606, 866, 872, 899, 908 |
| AclWI | GGATC | 6 cut(s) | 193, 206, 506, 583, 849, 1560 |
| AcoI | YGGCCR | 2 cut(s) | 657, 1221 |
| AcuI | CTGAAG | 1 cut(s) | 665 |
| AcvI | CACGTG | 1 cut(s) | 1479 |
| AcyI | GRCGYC | 2 cut(s) | 180, 518 |
| AdeI | CACNNNGTG | 1 cut(s) | 372 |
| AfaI | GTAC | 5 cut(s) | 285, 493, 1147, 1323, 1383 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 352, 430, 437, 944, 1463, 1469 |
| AflII | CTTAAG | 1 cut(s) | 122 |
| AflIII | ACRYGT | 1 cut(s) | 1476 |
| AgeI | ACCGGT | 1 cut(s) | 937 |
| AgsI | TTSAA | 8 cut(s) | 74, 105, 263, 448, 649, 802, 839, 1278 |
| AhlI | ACTAGT | 1 cut(s) | 1109 |
| AjnI | CCWGG | 2 cut(s) | 201, 1462 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 255, 287, 926, 958 |
| Alw21I | GWGCWC | 3 cut(s) | 121, 156, 1492 |
| AlwI | GGATC | 6 cut(s) | 193, 206, 506, 583, 849, 1560 |
| Ama87I | CYCGRG | 2 cut(s) | 149, 1414 |
| AoxI | GGCC | 3 cut(s) | 208, 657, 1221 |
| ApeKI | GCWGC | 5 cut(s) | 608, 869, 896, 905, 1202 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 412, 444 |
| AsiGI | ACCGGT | 1 cut(s) | 937 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 267, 1161 |
| AspS9I | GGNCC | 1 cut(s) | 428 |
| AsuC2I | CCSGG | 1 cut(s) | 439 |
| AsuHPI | GGTGA | 1 cut(s) | 821 |
| AsuNHI | GCTAGC | 1 cut(s) | 1601 |
| AvaI | CYCGRG | 2 cut(s) | 149, 1414 |
| AvaII | GGWCC | 1 cut(s) | 428 |
| BamHI | GGATCC | 1 cut(s) | 198 |
| BanI | GGYRCC | 1 cut(s) | 544 |
| BanII | GRGCYC | 2 cut(s) | 156, 1492 |
| BbrPI | CACGTG | 1 cut(s) | 1479 |
| BbsI | GAAGAC | 3 cut(s) | 218, 260, 957 |
| Bbv12I | GWGCWC | 3 cut(s) | 121, 156, 1492 |
| BbvCI | CCTCAGC | 1 cut(s) | 612 |
| BbvI | GCAGC | 5 cut(s) | 620, 881, 883, 917, 1214 |
| BccI | CCATC | 2 cut(s) | 86, 317 |
| BceAI | ACGGC | 8 cut(s) | 399, 524, 539, 582, 644, 656, 1208, 1235 |
| BciT130I | CCWGG | 2 cut(s) | 203, 1464 |
| BciVI | GTATCC | 1 cut(s) | 1070 |
| BcnI | CCSGG | 1 cut(s) | 439 |
| BcuI | ACTAGT | 1 cut(s) | 1109 |
| BfaI | CTAG | 5 cut(s) | 392, 536, 1110, 1310, 1602 |
| BfrI | CTTAAG | 1 cut(s) | 122 |
| BfuI | GTATCC | 1 cut(s) | 1070 |
| BglII | AGATCT | 1 cut(s) | 14 |
| BisI | GCNGC | 7 cut(s) | 304, 609, 867, 870, 897, 906, 1203 |
| BlsI | GCNGC | 7 cut(s) | 305, 610, 868, 871, 898, 907, 1204 |
| BmcAI | AGTACT | 1 cut(s) | 1383 |
| Bme1390I | CCNGG | 3 cut(s) | 203, 439, 1464 |
| Bme18I | GGWCC | 1 cut(s) | 428 |
| BmeT110I | CYCGRG | 2 cut(s) | 149, 1414 |
| BmgT120I | GGNCC | 1 cut(s) | 428 |
| BmiI | GGNNCC | 2 cut(s) | 200, 546 |
| BmrFI | CCNGG | 3 cut(s) | 203, 439, 1464 |
| BmsI | GCATC | 2 cut(s) | 608, 1432 |
| BmtI | GCTAGC | 1 cut(s) | 1605 |
| BpiI | GAAGAC | 3 cut(s) | 218, 260, 957 |
| BpmI | CTGGAG | 1 cut(s) | 732 |
| Bpu10I | CCTNAGC | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 1 cut(s) | 1151 |
| BpuMI | CCSGG | 1 cut(s) | 439 |
| BsaAI | YACGTR | 1 cut(s) | 1479 |
| BsaHI | GRCGYC | 2 cut(s) | 180, 518 |
| BsaI | GGTCTC | 4 cut(s) | 439, 1352, 1367, 1424 |
| BsaJI | CCNNGG | 3 cut(s) | 424, 540, 1072 |
| BsaWI | WCCGGW | 5 cut(s) | 113, 235, 430, 937, 1142 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1444, 1474 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 352, 430, 437, 944, 1463, 1469 |
| Bse118I | RCCGGY | 1 cut(s) | 937 |
| Bse1I | ACTGG | 2 cut(s) | 715, 1033 |
| Bse3DI | GCAATG | 1 cut(s) | 1492 |
| BseBI | CCWGG | 2 cut(s) | 203, 1464 |
| BseDI | CCNNGG | 3 cut(s) | 424, 540, 1072 |
| BseGI | GGATG | 3 cut(s) | 240, 309, 381 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 352, 430, 437, 944, 1463, 1469 |
| BseMI | GCAATG | 1 cut(s) | 1492 |
| BseMII | CTCAG | 1 cut(s) | 603 |
| BseNI | ACTGG | 2 cut(s) | 715, 1033 |
| BseRI | GAGGAG | 4 cut(s) | 629, 929, 932, 1412 |
| BseXI | GCAGC | 5 cut(s) | 620, 881, 883, 917, 1214 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1132 |
| BshFI | GGCC | 3 cut(s) | 210, 659, 1223 |
| BshNI | GGYRCC | 1 cut(s) | 544 |
| BshTI | ACCGGT | 1 cut(s) | 937 |
| BsiEI | CGRYCG | 1 cut(s) | 1132 |
| BsiHKAI | GWGCWC | 3 cut(s) | 121, 156, 1492 |
| BsiHKCI | CYCGRG | 2 cut(s) | 149, 1414 |
| BsiSI | CCGG | 8 cut(s) | 84, 114, 236, 431, 438, 515, 938, 1143 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 352, 430, 437, 944, 1463, 1469 |
| BsmBI | CGTCTC | 1 cut(s) | 1508 |
| BsmI | GAATGC | 2 cut(s) | 1134, 1204 |
| BsnI | GGCC | 3 cut(s) | 210, 659, 1223 |
| Bso31I | GGTCTC | 4 cut(s) | 439, 1352, 1367, 1424 |
| BsoBI | CYCGRG | 2 cut(s) | 149, 1414 |
| Bsp1286I | GDGCHC | 3 cut(s) | 121, 156, 1492 |
| Bsp1407I | TGTACA | 1 cut(s) | 283 |
| Bsp143I | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| BspACI | CCGC | 9 cut(s) | 62, 304, 386, 569, 606, 866, 872, 899, 908 |
| BspANI | GGCC | 3 cut(s) | 210, 659, 1223 |
| BspCNI | CTCAG | 1 cut(s) | 604 |
| BspHI | TCATGA | 1 cut(s) | 132 |
| BspLI | GGNNCC | 2 cut(s) | 200, 546 |
| BspOI | GCTAGC | 1 cut(s) | 1605 |
| BspPI | GGATC | 6 cut(s) | 193, 206, 506, 583, 849, 1560 |
| BspT107I | GGYRCC | 1 cut(s) | 544 |
| BspTI | CTTAAG | 1 cut(s) | 122 |
| BspTNI | GGTCTC | 4 cut(s) | 439, 1352, 1367, 1424 |
| BsrDI | GCAATG | 1 cut(s) | 1492 |
| BsrFI | RCCGGY | 1 cut(s) | 937 |
| BsrGI | TGTACA | 1 cut(s) | 283 |
| BsrI | ACTGG | 2 cut(s) | 715, 1033 |
| BssAI | RCCGGY | 1 cut(s) | 937 |
| BssECI | CCNNGG | 3 cut(s) | 424, 540, 1072 |
| BssMI | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| BssNI | GRCGYC | 2 cut(s) | 180, 518 |
| BssT1I | CCWWGG | 1 cut(s) | 1072 |
| Bst2UI | CCWGG | 2 cut(s) | 203, 1464 |
| Bst4CI | ACNGT | 9 cut(s) | 224, 425, 809, 846, 982, 1301, 1321, 1361, 1502 |
| Bst6I | CTCTTC | 6 cut(s) | 28, 618, 752, 906, 920, 1415 |
| BstACI | GRCGYC | 2 cut(s) | 180, 518 |
| BstAFI | CTTAAG | 1 cut(s) | 122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1479 |
| BstAUI | TGTACA | 1 cut(s) | 283 |
| BstBAI | YACGTR | 1 cut(s) | 1479 |
| BstC8I | GCNNGC | 3 cut(s) | 208, 1429, 1603 |
| BstDEI | CTNAG | 7 cut(s) | 612, 823, 851, 1378, 1575, 1590, 1634 |
| BstDSI | CCRYGG | 2 cut(s) | 424, 540 |
| BstF5I | GGATG | 3 cut(s) | 240, 309, 381 |
| BstKTI | GATC | 7 cut(s) | 17, 201, 487, 514, 591, 857, 1555 |
| BstMBI | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| BstMCI | CGRYCG | 1 cut(s) | 1132 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 212, 605, 902, 905, 1479 |
| BstNI | CCWGG | 2 cut(s) | 203, 1464 |
| BstSCI | CCNGG | 3 cut(s) | 201, 437, 1462 |
| BstV1I | GCAGC | 5 cut(s) | 620, 881, 883, 917, 1214 |
| BstV2I | GAAGAC | 3 cut(s) | 218, 260, 957 |
| BstX2I | RGATCY | 5 cut(s) | 14, 198, 588, 854, 1552 |
| BstYI | RGATCY | 5 cut(s) | 14, 198, 588, 854, 1552 |
| BsuI | GTATCC | 1 cut(s) | 1070 |
| BsuRI | GGCC | 3 cut(s) | 210, 659, 1223 |
| BtgI | CCRYGG | 2 cut(s) | 424, 540 |
| BtsCI | GGATG | 3 cut(s) | 240, 309, 381 |
| BtsI | GCAGTG | 1 cut(s) | 978 |
| BtsIMutI | CAGTG | 2 cut(s) | 480, 978 |
| Cac8I | GCNNGC | 3 cut(s) | 208, 1429, 1603 |
| CciI | TCATGA | 1 cut(s) | 132 |
| Cfr10I | RCCGGY | 1 cut(s) | 937 |
| Cfr13I | GGNCC | 1 cut(s) | 428 |
| CseI | GACGC | 1 cut(s) | 507 |
| Csp6I | GTAC | 5 cut(s) | 284, 492, 1146, 1322, 1382 |
| CspAI | ACCGGT | 1 cut(s) | 937 |
| CviAII | CATG | 3 cut(s) | 133, 1105, 1519 |
| CviQI | GTAC | 5 cut(s) | 284, 492, 1146, 1322, 1382 |
| DdeI | CTNAG | 7 cut(s) | 612, 823, 851, 1378, 1575, 1590, 1634 |
| DpnI | GATC | 7 cut(s) | 16, 200, 486, 513, 590, 856, 1554 |
| DpnII | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| DraIII | CACNNNGTG | 1 cut(s) | 372 |
| EaeI | YGGCCR | 2 cut(s) | 657, 1221 |
| Eam1104I | CTCTTC | 6 cut(s) | 28, 618, 752, 906, 920, 1415 |
| EarI | CTCTTC | 6 cut(s) | 28, 618, 752, 906, 920, 1415 |
| Ecl136II | GAGCTC | 2 cut(s) | 154, 1490 |
| Eco130I | CCWWGG | 1 cut(s) | 1072 |
| Eco24I | GRGCYC | 2 cut(s) | 156, 1492 |
| Eco31I | GGTCTC | 4 cut(s) | 439, 1352, 1367, 1424 |
| Eco47I | GGWCC | 1 cut(s) | 428 |
| Eco53kI | GAGCTC | 2 cut(s) | 154, 1490 |
| Eco57I | CTGAAG | 1 cut(s) | 665 |
| Eco72I | CACGTG | 1 cut(s) | 1479 |
| Eco88I | CYCGRG | 2 cut(s) | 149, 1414 |
| EcoICRI | GAGCTC | 2 cut(s) | 154, 1490 |
| EcoRII | CCWGG | 2 cut(s) | 201, 1462 |
| EcoT14I | CCWWGG | 1 cut(s) | 1072 |
| EcoT38I | GRGCYC | 2 cut(s) | 156, 1492 |
| ErhI | CCWWGG | 1 cut(s) | 1072 |
| Esp3I | CGTCTC | 1 cut(s) | 1508 |
| FaeI | CATG | 3 cut(s) | 136, 1108, 1522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 255, 287 |
| FatI | CATG | 3 cut(s) | 132, 1104, 1518 |
| Fnu4HI | GCNGC | 7 cut(s) | 304, 609, 867, 870, 897, 906, 1203 |
| FokI | GGATG | 3 cut(s) | 227, 296, 388 |
| FriOI | GRGCYC | 2 cut(s) | 156, 1492 |
| Fsp4HI | GCNGC | 7 cut(s) | 304, 609, 867, 870, 897, 906, 1203 |
| FspBI | CTAG | 5 cut(s) | 392, 536, 1110, 1310, 1602 |
| GluI | GCNGC | 7 cut(s) | 304, 609, 867, 870, 897, 906, 1203 |
| GsuI | CTGGAG | 1 cut(s) | 732 |
| HaeIII | GGCC | 3 cut(s) | 210, 659, 1223 |
| HapII | CCGG | 8 cut(s) | 84, 114, 236, 431, 438, 515, 938, 1143 |
| HgaI | GACGC | 1 cut(s) | 507 |
| Hin1I | GRCGYC | 2 cut(s) | 180, 518 |
| Hin1II | CATG | 3 cut(s) | 136, 1108, 1522 |
| HincII | GTYRAC | 2 cut(s) | 978, 985 |
| HindII | GTYRAC | 2 cut(s) | 978, 985 |
| HinfI | GANTC | 7 cut(s) | 136, 628, 702, 835, 1122, 1542, 1594 |
| HpaII | CCGG | 8 cut(s) | 84, 114, 236, 431, 438, 515, 938, 1143 |
| HphI | GGTGA | 1 cut(s) | 821 |
| Hpy166II | GTNNAC | 4 cut(s) | 284, 812, 978, 985 |
| Hpy188I | TCNGA | 7 cut(s) | 185, 220, 859, 1059, 1156, 1336, 1541 |
| Hpy188III | TCNNGA | 4 cut(s) | 133, 793, 839, 1168 |
| Hpy8I | GTNNAC | 4 cut(s) | 284, 812, 978, 985 |
| Hpy99I | CGWCG | 3 cut(s) | 185, 420, 523 |
| HpyAV | CCTTC | 4 cut(s) | 257, 796, 821, 1018 |
| HpyCH4III | ACNGT | 9 cut(s) | 224, 425, 809, 846, 982, 1301, 1321, 1361, 1502 |
| HpyCH4IV | ACGT | 3 cut(s) | 180, 371, 1478 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 402, 1202, 1445 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 212, 605, 902, 905, 1479 |
| HpyF3I | CTNAG | 7 cut(s) | 612, 823, 851, 1378, 1575, 1590, 1634 |
| HpySE526I | ACGT | 3 cut(s) | 180, 371, 1478 |
| Hsp92I | GRCGYC | 2 cut(s) | 180, 518 |
| Hsp92II | CATG | 3 cut(s) | 136, 1108, 1522 |
| Kzo9I | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| LmnI | GCTCC | 1 cut(s) | 1487 |
| Lsp1109I | GCAGC | 5 cut(s) | 620, 881, 883, 917, 1214 |
| LweI | GCATC | 2 cut(s) | 608, 1432 |
| MaeI | CTAG | 5 cut(s) | 392, 536, 1110, 1310, 1602 |
| MaeII | ACGT | 3 cut(s) | 180, 371, 1478 |
| MaeIII | GTNAC | 4 cut(s) | 55, 394, 632, 1295 |
| MalI | GATC | 7 cut(s) | 16, 200, 486, 513, 590, 856, 1554 |
| MboI | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| MflI | RGATCY | 5 cut(s) | 14, 198, 588, 854, 1552 |
| MhlI | GDGCHC | 3 cut(s) | 121, 156, 1492 |
| MluCI | AATT | 2 cut(s) | 409, 1258 |
| MlyI | GAGTC | 2 cut(s) | 622, 1551 |
| MmeI | TCCRAC | 3 cut(s) | 163, 337, 1267 |
| MroXI | GAANNNNTTC | 2 cut(s) | 267, 1161 |
| MseI | TTAA | 5 cut(s) | 38, 123, 464, 1386, 1639 |
| MslI | CAYNNNNRTG | 3 cut(s) | 40, 962, 1517 |
| MspA1I | CMGCKG | 4 cut(s) | 62, 611, 872, 908 |
| MspCI | CTTAAG | 1 cut(s) | 122 |
| MspI | CCGG | 8 cut(s) | 84, 114, 236, 431, 438, 515, 938, 1143 |
| MspR9I | CCNGG | 3 cut(s) | 203, 439, 1464 |
| Mva1269I | GAATGC | 2 cut(s) | 1134, 1204 |
| MvaI | CCWGG | 2 cut(s) | 203, 1464 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 212, 605, 902, 905, 1479 |
| NciI | CCSGG | 1 cut(s) | 439 |
| NdeII | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| NheI | GCTAGC | 1 cut(s) | 1601 |
| NlaIII | CATG | 3 cut(s) | 136, 1108, 1522 |
| NlaIV | GGNNCC | 2 cut(s) | 200, 546 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| PaeR7I | CTCGAG | 1 cut(s) | 149 |
| PagI | TCATGA | 1 cut(s) | 132 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 177, 412, 421 |
| PctI | GAATGC | 2 cut(s) | 1134, 1204 |
| PdmI | GAANNNNTTC | 2 cut(s) | 267, 1161 |
| PfeI | GAWTC | 5 cut(s) | 136, 702, 835, 1122, 1594 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1463 |
| PfoI | TCCNGGA | 1 cut(s) | 437 |
| PinAI | ACCGGT | 1 cut(s) | 937 |
| PkrI | GCNGC | 7 cut(s) | 305, 610, 868, 871, 898, 907, 1204 |
| PleI | GAGTC | 2 cut(s) | 622, 1550 |
| PmaCI | CACGTG | 1 cut(s) | 1479 |
| PmlI | CACGTG | 1 cut(s) | 1479 |
| PpsI | GAGTC | 2 cut(s) | 622, 1550 |
| Ppu21I | YACGTR | 1 cut(s) | 1479 |
| Psp124BI | GAGCTC | 2 cut(s) | 156, 1492 |
| Psp6I | CCWGG | 2 cut(s) | 201, 1462 |
| PspCI | CACGTG | 1 cut(s) | 1479 |
| PspGI | CCWGG | 2 cut(s) | 201, 1462 |
| PspN4I | GGNNCC | 2 cut(s) | 200, 546 |
| PspPI | GGNCC | 1 cut(s) | 428 |
| PspXI | VCTCGAGB | 1 cut(s) | 149 |
| PsuI | RGATCY | 5 cut(s) | 14, 198, 588, 854, 1552 |
| PvuII | CAGCTG | 1 cut(s) | 611 |
| RsaI | GTAC | 5 cut(s) | 285, 493, 1147, 1323, 1383 |
| RsaNI | GTAC | 5 cut(s) | 284, 492, 1146, 1322, 1382 |
| RseI | CAYNNNNRTG | 3 cut(s) | 40, 962, 1517 |
| SacI | GAGCTC | 2 cut(s) | 156, 1492 |
| SaqAI | TTAA | 5 cut(s) | 38, 123, 464, 1386, 1639 |
| SatI | GCNGC | 7 cut(s) | 304, 609, 867, 870, 897, 906, 1203 |
| Sau3AI | GATC | 7 cut(s) | 14, 198, 484, 511, 588, 854, 1552 |
| Sau96I | GGNCC | 1 cut(s) | 428 |
| ScaI | AGTACT | 1 cut(s) | 1383 |
| SchI | GAGTC | 2 cut(s) | 622, 1551 |
| ScrFI | CCNGG | 3 cut(s) | 203, 439, 1464 |
| SduI | GDGCHC | 3 cut(s) | 121, 156, 1492 |
| SfaNI | GCATC | 2 cut(s) | 608, 1432 |
| Sfr274I | CTCGAG | 1 cut(s) | 149 |
| SinI | GGWCC | 1 cut(s) | 428 |
| SlaI | CTCGAG | 1 cut(s) | 149 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 40, 962, 1517 |
| SmlI | CTYRAG | 3 cut(s) | 122, 149, 1166 |
| SmoI | CTYRAG | 3 cut(s) | 122, 149, 1166 |
| SpeI | ACTAGT | 1 cut(s) | 1109 |
| Sse9I | AATT | 2 cut(s) | 409, 1258 |
| SsiI | CCGC | 9 cut(s) | 62, 304, 386, 569, 606, 866, 872, 899, 908 |
| SspMI | CTAG | 5 cut(s) | 392, 536, 1110, 1310, 1602 |
| SstI | GAGCTC | 2 cut(s) | 156, 1492 |
| StyD4I | CCNGG | 3 cut(s) | 201, 437, 1462 |
| StyI | CCWWGG | 1 cut(s) | 1072 |
| TaaI | ACNGT | 9 cut(s) | 224, 425, 809, 846, 982, 1301, 1321, 1361, 1502 |
| TaiI | ACGT | 3 cut(s) | 183, 374, 1481 |
| TaqI | TCGA | 2 cut(s) | 150, 415 |
| TaqII | GACCGA | 1 cut(s) | 1118 |
| TasI | AATT | 2 cut(s) | 409, 1258 |
| TatI | WGTACW | 3 cut(s) | 283, 491, 1381 |
| TauI | GCSGC | 2 cut(s) | 306, 869 |
| TfiI | GAWTC | 5 cut(s) | 136, 702, 835, 1122, 1594 |
| Tru1I | TTAA | 5 cut(s) | 38, 123, 464, 1386, 1639 |
| Tru9I | TTAA | 5 cut(s) | 38, 123, 464, 1386, 1639 |
| TscAI | CASTG | 2 cut(s) | 487, 978 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| TseI | GCWGC | 5 cut(s) | 608, 869, 896, 905, 1202 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 5 cut(s) | 149, 392, 778, 1058, 1501 |
| TspGWI | ACGGA | 3 cut(s) | 572, 847, 1295 |
| TspRI | CASTG | 2 cut(s) | 487, 978 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1463 |
| Vha464I | CTTAAG | 1 cut(s) | 122 |
| VpaK11BI | GGWCC | 1 cut(s) | 428 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 324, 1191 |
| XhoI | CTCGAG | 1 cut(s) | 149 |
| XmnI | GAANNNNTTC | 2 cut(s) | 267, 1161 |
| XspI | CTAG | 5 cut(s) | 392, 536, 1110, 1310, 1602 |
| ZraI | GACGTC | 1 cut(s) | 181 |
| ZrmI | AGTACT | 1 cut(s) | 1383 |