Rorug05G0507500

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003876
Physical Location & Seq
Forward (+)
69019454 .. 69024374
4921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0507500.1

Sequence Viewer

Length: 699 bp
ATGTGGGCCAAGACTGAATTGATGGATGGCGCCACAATCCACACAACATTTGGTGGGGAAATTTTCGGCCATTCTAGGAAAGCCGTCATCTTTAGAAGGGATATCTATAACATGGCTAACATGCTGGAAGTATCTGGAGGAGTCATTGTTTTTTACATGAGCTACATTTATGGAGTCCTGAAGAAGTCTAAGATGCTTGATATGGTTGGCTTTATGGACCCTGCACACACCGGTATAATTGGGTGTGGAAATCCCACTGAACGGGCACGGTCTATGTCAAATCGGTACATGTTAGGGAAACCGGGGCAAATATTTTTGGTTCCATATAACTCAGGTGCTCATTGGATGTTGTCGGTGGTGAACCCGGATGAAGAAGCCGTGCATTTCATGGATCCGCTAAAAAGGCGACTTTGTGCTGGTGAATGGAAAAGTATTGTCGACAACTCTATTAAAATCTTCAATGCCCAAAAGGGTAGGAAAGGAAGGAAAATAATCCAATGGAAGAATCTTGCTGGTATTCCGGAGCAAACTGATTCTAAGACTTGTGGTTATTTTGTCATGCGTTATATGAAAGAAATTGTGGAGGACAAGAACTTGGAGTTTGCTACCAAGTGGGAAAGGAAATCAAATCTTGCTTACACACAGAAGGATATTGATGTGGTTCGAGCTGAATGGGCAAATCATGTTATGAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

232

Amino Acids

26.62

Weight (kDa)

9.4

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 104 - 227 8.7e-10 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 438
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 1 cut(s) 395
AclWI GGATC 2 cut(s) 386, 399
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 288
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 460
AluBI AGCT 2 cut(s) 162, 668
AluI AGCT 2 cut(s) 162, 668
Alw21I GWGCWC 1 cut(s) 340
AlwI GGATC 2 cut(s) 386, 399
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 2 cut(s) 6, 67
ApoI RAATTY 1 cut(s) 60
AsiGI ACCGGT 1 cut(s) 230
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 6, 217
AsuC2I CCSGG 2 cut(s) 303, 365
AsuHPI GGTGA 2 cut(s) 370, 431
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 268
BamHI GGATCC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 340
BccI CCATC 2 cut(s) 16, 20
BceAI ACGGC 2 cut(s) 68, 362
BcnI CCSGG 2 cut(s) 303, 365
BfaI CTAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 303, 365
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 6, 217
BmiI GGNNCC 4 cut(s) 31, 219, 321, 393
BmrFI CCNGG 2 cut(s) 303, 365
BmsI GCATC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 303, 365
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 230, 520
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 3 cut(s) 31, 351, 373
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 8, 69
BshNI GGYRCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 4 cut(s) 231, 302, 365, 521
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 2 cut(s) 8, 69
Bsp1286I GDGCHC 2 cut(s) 268, 340
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 8, 69
BspCNI CTCAG 1 cut(s) 344
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 31, 219, 321, 393
BspPI GGATC 2 cut(s) 386, 399
BspT107I GGYRCC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 189, 331, 537
BstF5I GGATG 3 cut(s) 31, 351, 373
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 403, 674
BstNSI RCATGY 2 cut(s) 124, 292
BstSCI CCNGG 2 cut(s) 301, 363
BstSLI GKGCMC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 2 cut(s) 8, 69
BtsCI GGATG 3 cut(s) 31, 351, 373
BtsIMutI CAGTG 1 cut(s) 255
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 6, 217
Csp6I GTAC 1 cut(s) 286
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 7 cut(s) 112, 121, 157, 289, 388, 559, 683
CviJI RGCY 8 cut(s) 8, 69, 83, 116, 162, 210, 377, 668
CviKI_1 RGCY 8 cut(s) 8, 69, 83, 116, 162, 210, 377, 668
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 3 cut(s) 189, 331, 537
DinI GGCGCC 1 cut(s) 31
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 67
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 200
EcoRV GATATC 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FaeI CATG 7 cut(s) 115, 124, 160, 292, 391, 562, 686
FatI CATG 7 cut(s) 111, 120, 156, 288, 387, 558, 682
FblI GTMKAC 1 cut(s) 438
FokI GGATG 3 cut(s) 38, 358, 380
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 2 cut(s) 8, 69
HapII CCGG 4 cut(s) 231, 302, 365, 521
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 7 cut(s) 115, 124, 160, 292, 391, 562, 686
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 4 cut(s) 141, 174, 505, 533
HpaII CCGG 4 cut(s) 231, 302, 365, 521
HphI GGTGA 2 cut(s) 370, 431
Hpy166II GTNNAC 2 cut(s) 361, 439
Hpy188III TCNNGA 3 cut(s) 135, 178, 521
Hpy8I GTNNAC 2 cut(s) 361, 439
HpyAV CCTTC 3 cut(s) 90, 477, 640
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 224, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 403, 674
HpyF3I CTNAG 3 cut(s) 189, 331, 537
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 7 cut(s) 115, 124, 160, 292, 391, 562, 686
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 523
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 4 cut(s) 193, 383, 448, 514
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 2 cut(s) 268, 340
MluCI AATT 4 cut(s) 17, 60, 237, 576
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 2 cut(s) 150, 183
MnlI CCTC 2 cut(s) 131, 577
MroI TCCGGA 1 cut(s) 520
MseI TTAA 1 cut(s) 450
MspI CCGG 4 cut(s) 231, 302, 365, 521
MspR9I CCNGG 2 cut(s) 303, 365
MwoI GCNNNNNNNGC 2 cut(s) 403, 674
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 2 cut(s) 303, 365
NdeII GATC 1 cut(s) 391
NlaIII CATG 7 cut(s) 115, 124, 160, 292, 391, 562, 686
NlaIV GGNNCC 4 cut(s) 31, 219, 321, 393
NspI RCATGY 2 cut(s) 124, 292
PciI ACATGT 1 cut(s) 288
PfeI GAWTC 2 cut(s) 505, 533
PinAI ACCGGT 1 cut(s) 230
PleI GAGTC 2 cut(s) 149, 182
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 2 cut(s) 149, 182
PscI ACATGT 1 cut(s) 288
PspN4I GGNNCC 4 cut(s) 31, 219, 321, 393
PspPI GGNCC 2 cut(s) 6, 217
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 450
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 6, 217
SchI GAGTC 2 cut(s) 150, 183
ScrFI CCNGG 2 cut(s) 303, 365
SduI GDGCHC 2 cut(s) 268, 340
SetI ASST 3 cut(s) 164, 337, 670
SfaNI GCATC 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 31
SinI GGWCC 1 cut(s) 217
Sse9I AATT 4 cut(s) 17, 60, 237, 576
SsiI CCGC 1 cut(s) 395
SspDI GGCGCC 1 cut(s) 29
SspI AATATT 1 cut(s) 312
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 301, 363
TaaI ACNGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 438, 664
TasI AATT 4 cut(s) 17, 60, 237, 576
TfiI GAWTC 2 cut(s) 505, 533
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 376, 384, 584
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 60
XceI RCATGY 2 cut(s) 124, 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.