Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Reverse (-)

6310254 .. 6319907

Gene Structure 9654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0078300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGGCGTCTTCACGGTTGTTCAAGAGGTTTAGCGGCATGTACAAACTCAATGCCAGAATCCAACCATACCCATCTGCCTACATCCCTACAAGAGCCCTATCACACTCTAAGCTTTTCAGCAATGGCGACAATTCTGTGCTTCCGGTTCTGATAGTGGGTGCAGGACCTGTGGGTCTCGTTCTTTCTATACTCCTAACAAAGCTAGGGGTCAAATGCGCAGTTTTGGAGAAAAGTACAAGTTTCTCCAGACATCCACAGGCACACTTCATTAACAATCGGTCGATGGAGATATTTCGCAAATTGGATGGCCTGGCAGAGGAGATCCAGAGGTCTCAACCACCAGTAGATTTGTGGAGAAAGTTTATATATTGCACTTCGCTTTCTGGTTCCATTCTTGGCTCAGTAGACCATATGCAACCTCAAGATTTTGAGCAAGTTGTCAGCCCAGTCTCTGTTGCACACTTCTCTCAGTACAAACTGAATACATTACTACTTAAGCAACTTGAAAATCTCAGCTTCAAGTATTATACCCCTGACGGGTTGAAAGGCCTTGACCATGAACCCCTTGAGGCAAGGCAAATATTGATGGGCTATGAGTGTGTTTCCATCAATGCCAGTGATGATATTGTTTCCGTGACTGCATCTTTTCTCAAGGATGGGAAACATATGGAGAGGAATATCAGATGCAATATGGTTGTAGGTACTGACGGTGCTGGAAGTACTGTACGTAAGCTGGCTGGTATAGATATGAGAGGTGAAAAGGACTTGCAGAAGCTTGTGAGTGTCCATTTCTTGAGCAGAGACCTTGGAAATTACTTGCACAGTGAGAGACCTGGCATGCTGTTTTTTATCTTCAATACTGAAGCTATAGGGGTCCTTGTTGCACATGATCTCAAGCAAGGGGAATTTGTATTGCAGATGCCATTTTATCCACCCCAGCAAAACCTTGAAGATTTCAGTCCCAAGACATGTGAGAGGATGATCTTCAAATTGGTAGGTCAAGAGCTTGGAGACATAAATGTGATTGACATAAAACCTTGGGTGATGCATGCTGAAGTTGCCGAGAAGTTTCTAAGTAGTCAAAACCGTGTAATTCTTGCTGGTGATGCTGCTCATCGATTCCCCCCTGCTGGTGGATTTGGTATGAATACTGGAATTCAGGATTCTCATAACCTTGCCTGGAAGATAGCTTCTGTAGTAAAGGGTATTGCACCACCTTCAATACTTAATACTTATGAAACAGAACGTAGGCCGATTGCCATTTTCAATACAACTCTTAGTATTCAGAACTTCAAAGCAGCCATGGCTGTTCCTGGTGCGCTTGGTCTTGATCCAACTATTGCAAACTCGGTACATCGAGTAATAAATAGGGGGGTTGGTTCCATTTTACCATCTGGACTACAGAGCGCCATTTTGGATGGAATTTTCATCTTAGGTCGTGCACAGTTATCAGAAACTCTTTTGAATGAAAACAACCCAGTTGGAGCTTTAAGGCTTGCTAATCTGAGACGCATATTTGAAGAAGGAAAGAGTCTCCAGCTCCAGTTCCCGGCAGAAGATCTTGGTTTCAGGTACCTAGAAGGTGCACTTGTTCCTGACCATAATGGTGCACTGGGTGGTCCAGATGGACCTACCGGTCGCCGGAGGGACTATGTTCCTATTGCAGATCCAGGTTCAAGGCTTCCTCACATGAATGTGAGGATATTGTCAAATTCATCGAGTGAGGCAACTATTTCTACACTGGATCTTATATCTGGAGACAAAATTGAGTTTCTCCTTATTATAGCACCGATAGAGCCATCCTACCATCTTGCTCATGCTGCATTGAAGGTGGCTGAGGAATTCAAAGTTTCTGCAAGGGTGTGCGTGTTGTGGCCTGCTGGTAGTGCTAAAGGAGTGGAGGTAGGAAGTAAGGTATCATTGAAACCGCAGGACAATTACATGGACGTTATGGAAGTTAAAAAGTCATCAAATGCTTCGTCATGGTGGGACATCTGTCAAATGACTGATAAAGGAGCCATCCTAGTTCGGCCTGATGAGCATGTTGCTTGGCGTCTGAAGTCTGGAGTTGTTGGGGACCCTATGAGGGAAATGAGAAGGGCCTTTTCTGCTGCCCTAGGCTTGAAGTCACATATTAAAGACCAAGAAGCTGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

719

Amino Acids

79.16

Weight (kDa)

8.29

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	48 - 420	3.6e-70	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	171, 1635
Acc16I	TGCGCA	1 cut(s)	217
Acc65I	GGTACC	1 cut(s)	1572
AccB1I	GGYRCC	1 cut(s)	1572
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	2 cut(s)	33, 1928
AclWI	GGATC	4 cut(s)	316, 1325, 1661, 1752
AcsI	RAATTY	5 cut(s)	905, 1155, 1422, 1711, 1841
AcuI	CTGAAG	3 cut(s)	882, 1074, 2078
AcyI	GRCGYC	2 cut(s)	5, 2053
AdeI	CACNNNGTG	1 cut(s)	1616
AfaI	GTAC	8 cut(s)	41, 235, 473, 703, 721, 726, 1353, 1574
AfiI	CCNNNNNNNGG	7 cut(s)	316, 537, 1130, 1133, 1549, 1641, 2086
AflII	CTTAAG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	968
AgeI	ACCGGT	1 cut(s)	1634
AjnI	CCWGG	5 cut(s)	309, 832, 1178, 1312, 1669
Alw21I	GWGCWC	3 cut(s)	1444, 1588, 1612
Alw26I	GTCTC	9 cut(s)	179, 336, 454, 795, 823, 1005, 1501, 1538, 1752
Alw44I	GTGCAC	3 cut(s)	1440, 1584, 1608
AlwI	GGATC	4 cut(s)	316, 1325, 1661, 1752
AlwNI	CAGNNNCTG	2 cut(s)	167, 452
AoxI	GGCC	6 cut(s)	307, 547, 1250, 1874, 2030, 2100
ApaLI	GTGCAC	3 cut(s)	1440, 1584, 1608
ApeKI	GCWGC	4 cut(s)	1109, 1298, 1820, 2111
ApoI	RAATTY	5 cut(s)	905, 1155, 1422, 1711, 1841
ArsI	GACNNNNNNTTYG	2 cut(s)	1964, 1996
AsiGI	ACCGGT	1 cut(s)	1634
Asp718I	GGTACC	1 cut(s)	1572
AspA2I	CCTAGG	1 cut(s)	2116
AspLEI	GCGC	3 cut(s)	218, 1321, 1409
AspS9I	GGNCC	6 cut(s)	164, 874, 1619, 1628, 2077, 2100
AsuC2I	CCSGG	1 cut(s)	1550
AsuHPI	GGTGA	3 cut(s)	767, 1054, 1115
AvaII	GGWCC	5 cut(s)	164, 874, 1619, 1628, 2077
AvrII	CCTAGG	1 cut(s)	2116
BaeGI	GKGCMC	3 cut(s)	1444, 1588, 1612
BanI	GGYRCC	1 cut(s)	1572
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	3 cut(s)	1444, 1588, 1612
BbvCI	CCTCAGC	1 cut(s)	1836
BbvI	GCAGC	4 cut(s)	1096, 1310, 1807, 2098
BciT130I	CCWGG	5 cut(s)	311, 834, 1180, 1314, 1671
BclI	TGATCA	1 cut(s)	2152
BcnI	CCSGG	1 cut(s)	1550
BcoDI	GTCTC	9 cut(s)	179, 336, 454, 795, 823, 1005, 1501, 1538, 1752
BfaI	CTAG	4 cut(s)	203, 1577, 2024, 2117
BfmI	CTRYAG	3 cut(s)	867, 1194, 1400
BfoI	RGCGCY	1 cut(s)	1410
BfrI	CTTAAG	1 cut(s)	494
BglII	AGATCT	1 cut(s)	1558
BisI	GCNGC	5 cut(s)	34, 1110, 1299, 1821, 2112
BlnI	CCTAGG	1 cut(s)	2116
BlsI	GCNGC	5 cut(s)	35, 1111, 1300, 1822, 2113
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	6 cut(s)	311, 834, 1180, 1314, 1550, 1671
Bme18I	GGWCC	5 cut(s)	164, 874, 1619, 1628, 2077
BmgT120I	GGNCC	6 cut(s)	164, 874, 1619, 1628, 2077, 2100
BmiI	GGNNCC	7 cut(s)	388, 875, 1381, 1574, 2017, 2078, 2079
BmrFI	CCNGG	6 cut(s)	311, 834, 1180, 1314, 1550, 1671
BmrI	ACTGGG	3 cut(s)	440, 1472, 1622
BmsI	GCATC	5 cut(s)	650, 674, 909, 1035, 1096
BmuI	ACTGGG	3 cut(s)	440, 1472, 1622
BoxI	GACNNNNGTC	1 cut(s)	1995
BpmI	CTGGAG	5 cut(s)	229, 1520, 1526, 1776, 2085
Bpu10I	CCTNAGC	1 cut(s)	1836
BpuEI	CTTGAG	5 cut(s)	405, 587, 635, 814, 878
BpuMI	CCSGG	1 cut(s)	1550
Bsa29I	ATCGAT	1 cut(s)	1117
BsaAI	YACGTR	1 cut(s)	728
BsaHI	GRCGYC	2 cut(s)	5, 2053
BsaI	GGTCTC	4 cut(s)	179, 336, 795, 823
BsaJI	CCNNGG	4 cut(s)	805, 1037, 1302, 2116
BsaWI	WCCGGW	2 cut(s)	142, 1634
BsaXI	ACNNNNNCTCC	2 cut(s)	1887, 1917
Bsc4I	CCNNNNNNNGG	7 cut(s)	316, 537, 1130, 1133, 1549, 1641, 2086
Bse118I	RCCGGY	1 cut(s)	1634
Bse1I	ACTGG	8 cut(s)	341, 446, 615, 1156, 1478, 1543, 1617, 1746
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	5 cut(s)	311, 834, 1180, 1314, 1671
BseCI	ATCGAT	1 cut(s)	1117
BseDI	CCNNGG	4 cut(s)	805, 1037, 1302, 2116
BseGI	GGATG	8 cut(s)	81, 250, 310, 661, 984, 1423, 1799, 2019
BseLI	CCNNNNNNNGG	7 cut(s)	316, 537, 1130, 1133, 1549, 1641, 2086
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	5 cut(s)	414, 482, 526, 1496, 1827
BseNI	ACTGG	8 cut(s)	341, 446, 615, 1156, 1478, 1543, 1617, 1746
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	3 cut(s)	1444, 1588, 1612
BseXI	GCAGC	4 cut(s)	1096, 1310, 1807, 2098
BseYI	CCCAGC	1 cut(s)	936
BsgI	GTGCAG	1 cut(s)	180
Bsh1285I	CGRYCG	2 cut(s)	281, 1639
BshFI	GGCC	6 cut(s)	309, 549, 1252, 1876, 2032, 2102
BshNI	GGYRCC	1 cut(s)	1572
BshTI	ACCGGT	1 cut(s)	1634
BshVI	ATCGAT	1 cut(s)	1117
BsiEI	CGRYCG	2 cut(s)	281, 1639
BsiHKAI	GWGCWC	3 cut(s)	1444, 1588, 1612
BsiSI	CCGG	4 cut(s)	143, 1550, 1635, 1642
BslFI	GGGAC	4 cut(s)	945, 1661, 2003, 2090
BslI	CCNNNNNNNGG	7 cut(s)	316, 537, 1130, 1133, 1549, 1641, 2086
BsmAI	GTCTC	9 cut(s)	179, 336, 454, 795, 823, 1005, 1501, 1538, 1752
BsmBI	CGTCTC	1 cut(s)	1501
BsmFI	GGGAC	4 cut(s)	945, 1661, 2003, 2090
BsnI	GGCC	6 cut(s)	309, 549, 1252, 1876, 2032, 2102
Bso31I	GGTCTC	4 cut(s)	179, 336, 795, 823
Bsp1286I	GDGCHC	4 cut(s)	97, 1444, 1588, 1612
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
Bsp19I	CCATGG	1 cut(s)	1302
BspACI	CCGC	2 cut(s)	33, 1928
BspANI	GGCC	6 cut(s)	309, 549, 1252, 1876, 2032, 2102
BspCNI	CTCAG	5 cut(s)	413, 481, 525, 1497, 1828
BspDI	ATCGAT	1 cut(s)	1117
BspLI	GGNNCC	7 cut(s)	388, 875, 1381, 1574, 2017, 2078, 2079
BspPI	GGATC	4 cut(s)	316, 1325, 1661, 1752
BspT107I	GGYRCC	1 cut(s)	1572
BspTI	CTTAAG	1 cut(s)	494
BspTNI	GGTCTC	4 cut(s)	179, 336, 795, 823
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	1634
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	8 cut(s)	341, 446, 615, 1156, 1478, 1543, 1617, 1746
BssAI	RCCGGY	1 cut(s)	1634
BssECI	CCNNGG	4 cut(s)	805, 1037, 1302, 2116
BssMI	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
BssNI	GRCGYC	2 cut(s)	5, 2053
BssT1I	CCWWGG	4 cut(s)	805, 1037, 1302, 2116
Bst2UI	CCWGG	5 cut(s)	311, 834, 1180, 1314, 1671
Bst4CI	ACNGT	6 cut(s)	15, 710, 724, 824, 1088, 1446
BstACI	GRCGYC	2 cut(s)	5, 2053
BstAFI	CTTAAG	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	5 cut(s)	735, 839, 1050, 1497, 1878
BstDEI	CTNAG	9 cut(s)	108, 400, 468, 512, 1073, 1277, 1432, 1505, 1836
BstDSI	CCRYGG	1 cut(s)	1302
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	8 cut(s)	81, 250, 310, 661, 984, 1423, 1799, 2019
BstH2I	RGCGCY	1 cut(s)	1410
BstHHI	GCGC	3 cut(s)	218, 1321, 1409
BstKTI	GATC	8 cut(s)	324, 892, 984, 1333, 1561, 1669, 1747, 2155
BstMAI	GTCTC	9 cut(s)	179, 336, 454, 795, 823, 1005, 1501, 1538, 1752
BstMBI	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
BstMCI	CGRYCG	2 cut(s)	281, 1639
BstMWI	GCNNNNNNNGC	7 cut(s)	1058, 1106, 1304, 1820, 1886, 2038, 2108
BstNI	CCWGG	5 cut(s)	311, 834, 1180, 1314, 1671
BstNSI	RCATGY	5 cut(s)	40, 841, 972, 1052, 2045
BstPAI	GACNNNNGTC	1 cut(s)	1995
BstSCI	CCNGG	6 cut(s)	309, 832, 1178, 1312, 1548, 1669
BstSFI	CTRYAG	3 cut(s)	867, 1194, 1400
BstSLI	GKGCMC	3 cut(s)	1444, 1588, 1612
BstSNI	TACGTA	1 cut(s)	728
BstV1I	GCAGC	4 cut(s)	1096, 1310, 1807, 2098
BstX2I	RGATCY	4 cut(s)	321, 1558, 1666, 1744
BstYI	RGATCY	4 cut(s)	321, 1558, 1666, 1744
Bsu15I	ATCGAT	1 cut(s)	1117
BsuRI	GGCC	6 cut(s)	309, 549, 1252, 1876, 2032, 2102
BsuTUI	ATCGAT	1 cut(s)	1117
BtgI	CCRYGG	1 cut(s)	1302
BtsCI	GGATG	8 cut(s)	81, 250, 310, 661, 984, 1423, 1799, 2019
BtsIMutI	CAGTG	4 cut(s)	622, 829, 1610, 1739
Cac8I	GCNNGC	5 cut(s)	735, 839, 1050, 1497, 1878
CaiI	CAGNNNCTG	2 cut(s)	167, 452
CfoI	GCGC	3 cut(s)	218, 1321, 1409
Cfr10I	RCCGGY	1 cut(s)	1634
Cfr13I	GGNCC	6 cut(s)	164, 874, 1619, 1628, 2077, 2100
ClaI	ATCGAT	1 cut(s)	1117
CseI	GACGC	2 cut(s)	1518, 2042
Csp6I	GTAC	8 cut(s)	40, 234, 472, 702, 720, 725, 1352, 1573
CspAI	ACCGGT	1 cut(s)	1634
CviQI	GTAC	8 cut(s)	40, 234, 472, 702, 720, 725, 1352, 1573
DdeI	CTNAG	9 cut(s)	108, 400, 468, 512, 1073, 1277, 1432, 1505, 1836
DpnI	GATC	8 cut(s)	323, 891, 983, 1332, 1560, 1668, 1746, 2154
DpnII	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
DraIII	CACNNNGTG	1 cut(s)	1616
DrdI	GACNNNNNNGTC	2 cut(s)	171, 1635
DseDI	GACNNNNNNGTC	2 cut(s)	171, 1635
Eco105I	TACGTA	1 cut(s)	728
Eco130I	CCWWGG	4 cut(s)	805, 1037, 1302, 2116
Eco147I	AGGCCT	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	4 cut(s)	179, 336, 795, 823
Eco47I	GGWCC	5 cut(s)	164, 874, 1619, 1628, 2077
Eco57I	CTGAAG	3 cut(s)	882, 1074, 2078
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	4 cut(s)	164, 874, 2077, 2100
EcoRI	GAATTC	2 cut(s)	1155, 1841
EcoRII	CCWGG	5 cut(s)	309, 832, 1178, 1312, 1669
EcoT14I	CCWWGG	4 cut(s)	805, 1037, 1302, 2116
EcoT22I	ATGCAT	1 cut(s)	1050
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	4 cut(s)	805, 1037, 1302, 2116
Esp3I	CGTCTC	1 cut(s)	1501
FalI	AAGNNNNNCTT	2 cut(s)	1572, 1604
FaqI	GGGAC	4 cut(s)	945, 1661, 2003, 2090
FauNDI	CATATG	2 cut(s)	411, 666
FbaI	TGATCA	1 cut(s)	2152
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	5 cut(s)	34, 1110, 1299, 1821, 2112
FokI	GGATG	8 cut(s)	68, 237, 317, 668, 991, 1430, 1786, 2006
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	34, 1110, 1299, 1821, 2112
FspBI	CTAG	4 cut(s)	203, 1577, 2024, 2117
FspI	TGCGCA	1 cut(s)	217
GlaI	GCGC	3 cut(s)	217, 1320, 1408
GluI	GCNGC	5 cut(s)	34, 1110, 1299, 1821, 2112
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	5 cut(s)	229, 1520, 1526, 1776, 2085
HaeII	RGCGCY	1 cut(s)	1410
HaeIII	GGCC	6 cut(s)	309, 549, 1252, 1876, 2032, 2102
HapII	CCGG	4 cut(s)	143, 1550, 1635, 1642
HgaI	GACGC	2 cut(s)	1518, 2042
HhaI	GCGC	3 cut(s)	218, 1321, 1409
Hin1I	GRCGYC	2 cut(s)	5, 2053
Hin6I	GCGC	3 cut(s)	216, 1319, 1407
HinP1I	GCGC	3 cut(s)	216, 1319, 1407
HindIII	AAGCTT	2 cut(s)	110, 773
HinfI	GANTC	4 cut(s)	57, 1119, 1163, 1531
HpaII	CCGG	4 cut(s)	143, 1550, 1635, 1642
HphI	GGTGA	3 cut(s)	767, 1054, 1115
Hpy166II	GTNNAC	4 cut(s)	406, 1442, 1586, 1610
Hpy188I	TCNGA	6 cut(s)	150, 683, 1287, 1453, 1506, 2058
Hpy8I	GTNNAC	4 cut(s)	406, 1442, 1586, 1610
HpyAV	CCTTC	5 cut(s)	1227, 1517, 1574, 1822, 2091
HpyCH4III	ACNGT	6 cut(s)	15, 710, 724, 824, 1088, 1446
HpyCH4IV	ACGT	3 cut(s)	727, 1246, 1947
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1058, 1106, 1304, 1820, 1886, 2038, 2108
HpyF3I	CTNAG	9 cut(s)	108, 400, 468, 512, 1073, 1277, 1432, 1505, 1836
HpySE526I	ACGT	3 cut(s)	727, 1246, 1947
Hsp92I	GRCGYC	2 cut(s)	5, 2053
HspAI	GCGC	3 cut(s)	216, 1319, 1407
KflI	GGGWCCC	1 cut(s)	2077
KpnI	GGTACC	1 cut(s)	1576
Ksp22I	TGATCA	1 cut(s)	2152
Kzo9I	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
LmnI	GCTCC	3 cut(s)	1484, 1545, 2015
Lsp1109I	GCAGC	4 cut(s)	1096, 1310, 1807, 2098
LweI	GCATC	5 cut(s)	650, 674, 909, 1035, 1096
MaeI	CTAG	4 cut(s)	203, 1577, 2024, 2117
MaeII	ACGT	3 cut(s)	727, 1246, 1947
MaeIII	GTNAC	2 cut(s)	634, 2127
MalI	GATC	8 cut(s)	323, 891, 983, 1332, 1560, 1668, 1746, 2154
MboI	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
MboII	GAAGA	6 cut(s)	844, 962, 976, 1195, 1532, 1568
MflI	RGATCY	4 cut(s)	321, 1558, 1666, 1744
MhlI	GDGCHC	4 cut(s)	97, 1444, 1588, 1612
MlyI	GAGTC	1 cut(s)	1540
MmeI	TCCRAC	3 cut(s)	85, 1358, 1462
Mph1103I	ATGCAT	1 cut(s)	1050
MseI	TTAA	6 cut(s)	270, 495, 1227, 1490, 1959, 2136
MslI	CAYNNNNRTG	4 cut(s)	1019, 1605, 1692, 1694
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	4 cut(s)	143, 1550, 1635, 1642
MspR9I	CCNGG	6 cut(s)	311, 834, 1180, 1314, 1550, 1671
MvaI	CCWGG	5 cut(s)	311, 834, 1180, 1314, 1671
MwoI	GCNNNNNNNGC	7 cut(s)	1058, 1106, 1304, 1820, 1886, 2038, 2108
NciI	CCSGG	1 cut(s)	1550
NcoI	CCATGG	1 cut(s)	1302
NdeI	CATATG	2 cut(s)	411, 666
NdeII	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
NlaIV	GGNNCC	7 cut(s)	388, 875, 1381, 1574, 2017, 2078, 2079
NmeAIII	GCCGAG	1 cut(s)	1087
NmuCI	GTSAC	2 cut(s)	634, 2127
NsbI	TGCGCA	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	1050
NspI	RCATGY	5 cut(s)	40, 841, 972, 1052, 2045
PaeI	GCATGC	2 cut(s)	841, 1052
PceI	AGGCCT	1 cut(s)	549
PciI	ACATGT	1 cut(s)	968
PfeI	GAWTC	3 cut(s)	57, 1119, 1163
PinAI	ACCGGT	1 cut(s)	1634
PkrI	GCNGC	5 cut(s)	35, 1111, 1300, 1822, 2113
PleI	GAGTC	1 cut(s)	1539
PpsI	GAGTC	1 cut(s)	1539
Ppu21I	YACGTR	1 cut(s)	728
PpuMI	RGGWCCY	3 cut(s)	164, 874, 2077
PscI	ACATGT	1 cut(s)	968
PshAI	GACNNNNGTC	1 cut(s)	1995
Psp5II	RGGWCCY	3 cut(s)	164, 874, 2077
Psp6I	CCWGG	5 cut(s)	309, 832, 1178, 1312, 1669
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	5 cut(s)	309, 832, 1178, 1312, 1669
PspN4I	GGNNCC	7 cut(s)	388, 875, 1381, 1574, 2017, 2078, 2079
PspPI	GGNCC	6 cut(s)	164, 874, 1619, 1628, 2077, 2100
PspPPI	RGGWCCY	3 cut(s)	164, 874, 2077
PstNI	CAGNNNCTG	2 cut(s)	167, 452
PsuI	RGATCY	4 cut(s)	321, 1558, 1666, 1744
RsaI	GTAC	8 cut(s)	41, 235, 473, 703, 721, 726, 1353, 1574
RsaNI	GTAC	8 cut(s)	40, 234, 472, 702, 720, 725, 1352, 1573
RseI	CAYNNNNRTG	4 cut(s)	1019, 1605, 1692, 1694
SaqAI	TTAA	6 cut(s)	270, 495, 1227, 1490, 1959, 2136
SatI	GCNGC	5 cut(s)	34, 1110, 1299, 1821, 2112
Sau3AI	GATC	8 cut(s)	321, 889, 981, 1330, 1558, 1666, 1744, 2152
Sau96I	GGNCC	6 cut(s)	164, 874, 1619, 1628, 2077, 2100
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	1 cut(s)	1540
ScrFI	CCNGG	6 cut(s)	311, 834, 1180, 1314, 1550, 1671
SduI	GDGCHC	4 cut(s)	97, 1444, 1588, 1612
SfaNI	GCATC	5 cut(s)	650, 674, 909, 1035, 1096
SfcI	CTRYAG	3 cut(s)	867, 1194, 1400
SinI	GGWCC	5 cut(s)	164, 874, 1619, 1628, 2077
SmiMI	CAYNNNNRTG	4 cut(s)	1019, 1605, 1692, 1694
SmlI	CTYRAG	6 cut(s)	420, 494, 566, 650, 793, 893
SmoI	CTYRAG	6 cut(s)	420, 494, 566, 650, 793, 893
SnaBI	TACGTA	1 cut(s)	728
SphI	GCATGC	2 cut(s)	841, 1052
SseBI	AGGCCT	1 cut(s)	549
SsiI	CCGC	2 cut(s)	33, 1928
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	4 cut(s)	203, 1577, 2024, 2117
StuI	AGGCCT	1 cut(s)	549
StyD4I	CCNGG	6 cut(s)	309, 832, 1178, 1312, 1548, 1669
StyI	CCWWGG	4 cut(s)	805, 1037, 1302, 2116
TaaI	ACNGT	6 cut(s)	15, 710, 724, 824, 1088, 1446
TaiI	ACGT	3 cut(s)	730, 1249, 1950
TaqI	TCGA	4 cut(s)	281, 1117, 1357, 1718
TaqII	GACCGA	1 cut(s)	267
TatI	WGTACW	4 cut(s)	39, 233, 471, 719
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	57, 1119, 1163
Tru1I	TTAA	6 cut(s)	270, 495, 1227, 1490, 1959, 2136
Tru9I	TTAA	6 cut(s)	270, 495, 1227, 1490, 1959, 2136
TscAI	CASTG	4 cut(s)	622, 829, 1617, 1746
TseFI	GTSAC	2 cut(s)	634, 2127
TseI	GCWGC	4 cut(s)	1109, 1298, 1820, 2111
Tsp45I	GTSAC	2 cut(s)	634, 2127
TspDTI	ATGAA	8 cut(s)	256, 573, 1160, 1251, 1417, 1482, 1704, 1706
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	4 cut(s)	622, 829, 1617, 1746
Vha464I	CTTAAG	1 cut(s)	494
VneI	GTGCAC	3 cut(s)	1440, 1584, 1608
VpaK11BI	GGWCC	5 cut(s)	164, 874, 1619, 1628, 2077
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	5 cut(s)	905, 1155, 1422, 1711, 1841
XceI	RCATGY	5 cut(s)	40, 841, 972, 1052, 2045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	348
XmaJI	CCTAGG	1 cut(s)	2116
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	4 cut(s)	203, 1577, 2024, 2117
ZrmI	AGTACT	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.