Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Reverse (-)

61006393 .. 61010308

Gene Structure 3916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGACAGAAAGCAGCAGAGAATCCATGGAAGAAGAACCCAACCAGGACGAAATCACAGCCCCTCTCATTTCTAGAGATGAAGGTCAAACCTCCTCATATTCACCGAAAGAAGAAGAAAACTCGCCGGTGGAGCAAGTAGCCCTGACGGTGCAGACCGGAGACGACCCCTCCCTTCCTGTCCTGACCTTCCGAATGTGGGTCCTAGGAACCCTCTCCTGCGTCCTCCTCTCTTTCCTCAACCAGTTCTTCTGGTACCGGACCGAGCCACTGTCGATAACAGCCATCTCGGCCCAGATAGCAGTCGTGCCCATCGGCCAGCTCATGGCCGCTAGGATCACGACGCGCGTCTTCTTCAAAGGGACCAGATGGGAATTCACACTCAACCCTGGCCCCTTCAACGTCAAGGAACACGTCCTCATCACCATCTTCGCCAACTCCGGCGCCGGAACAGTCTACGCCATTCATATTGTGACGGTGGTTAAGGTTTTTTACAAGAAGCACATCACGTTCTTCGTGTCCTTGCTTGTCATTATAACAACTCAGGTGTTGGGGTTTGGCTGGGCTGGGATTTTCAGAAGTTACTTGGTCGAACCAGCAGCTATGTGGTGGCCAGCAAATTTGGTTCAAGTCTCATTGTTCAGGGCTCTCCACGAGATAGAAGAACGGCCCAAGGGTGGTGTGACACGTATACAGTTCTTTCTCATTGCCTTCATCTGTAGTTTTGCTTACTATGTCTTTCCCGGCTACCTGTTCACAATGTTAACATCCCTCTCGTGGATCTGCTGGATATTTCCCTCATCAGTCCTCGCCCAGCAGATCGGGTCGGGTCTTTACGGGCTCGGACTCTGCGCCTTTGGGCTTGACTGGTCCACTATCTCCTCCTATCTCGGAAGCCCACTTGCAAGCCCATGGTTTGCCACTGCCAATGTTGCTGCTGGTTTTGTGTTTGTCATGTATGTGTTGACTCCCATATGTTATTGGCTTAACGTCTACAAAGCCAAAACCTTCCCTCTATTTTCAGAGGACCTCTTCACAGCAGATGGTCAAGAATACAACATCACAGAAATCATAGACTCCAATTTCCATCTTAATATTACGGCCTATGAGGAAGAAGGTCCACTTTACATTAGCACATTTTTTGCAATGACTTATGGTGTTGGCTTTGCTGCACTCACCTCTACAATCGTTCATGTTGCACTTTTCCATGGAAGGGAAATATGGGAGCAAAGCAAATCAAGTTTCAAGGAGAAGAAAATGGACATACACACAAGACTTATGCAGAGATACAACCAAGTGCCTCAGTGGTGGTTTGTGGCCATTCTTCTGACTAACATTGCACTCACCATTTTCACATGCGAGTATTACAATGATCAACTTCAGTTGCCTTGGTGGGGTGTCCTTCTAGCCTGTACTATTGCCATTTTCTTCACCCTCCCAATCGGTATCATCACAGCAATTACAAATCAGACACCAGGTTTGAATATCATTACTGAGTACATAATAGGGTACATCTACCCAGGATATCCAGTTGCCAATATGTGCTTCAAAGTCTATGGCTACATAAGTATGACTCAAGCCATCACATTTTTGCAAGACTTTAAGCTTGGTCATTACATGAAAATCCCTCCTAGAACCATGTTCATGGCACAGGTTGTTGGAACCCTTATAGCCGGGCTTGTCTACTTGAGCACAGCATGGTGGCTAATGGAGACCATCCCCGGCATATGTACTGACACAACATCAGTTTGGACTTGCCCTATGGACACTGTGTTTTATGATGCGTCTGTCATATGGGGTCTGATTGGTCCACGAAGAATATTCGGGGACTTGGGCACATATGCAGCAGTGAACTGGTTCTTCTTAGGTGGTGCAATTGCTCCAGTTCTGGTTTGGTTAGCTGCTAAGGCATTTCCACAACAGGAGTGGATTCGACTCATCAACATGCCGGTTTTAATTGGCGCAACGAGTGATATGCCACCAGCTACTGCGGTTAACTACACTTCTTGGATCATTTTAGGTTTTCTCTCTGGTTTTGTTGCGTATAGGTATAGACCAGATTGGTGGAGGAGGCACAACTATGTTCTTTCTGGGGCACTTGATGCTGGTCTTGCCTTTATGGGGGTACTCTTGTATTTTTCTGTTGGATTGGAAGACATTAGTCCCAATTGGTGGGGAAATGACCTTGATGGGTGTCCCTTGGCTCAATGCCCTACAGCCGTTGGGGTGGTTGTTGAGGGCTGCCCTGTTTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

751

Amino Acids

84.48

Weight (kDa)

5.2

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	61 - 714	4.5e-175	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	2 cut(s)	252, 440
AccB7I	CCANNNNNTGG	2 cut(s)	322, 2169
AccI	GTMKAC	4 cut(s)	453, 688, 990, 1680
AccII	CGCG	2 cut(s)	343, 345
AciI	CCGC	2 cut(s)	327, 1988
AclWI	GGATC	3 cut(s)	341, 785, 2015
AcoI	YGGCCR	4 cut(s)	313, 324, 608, 1314
AcsI	RAATTY	2 cut(s)	371, 616
AcuI	CTGAAG	1 cut(s)	1361
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	6 cut(s)	254, 1411, 1496, 1508, 1729, 2124
AfiI	CCNNNNNNNGG	8 cut(s)	196, 322, 674, 774, 1210, 1391, 2118, 2169
AflIII	ACRYGT	2 cut(s)	409, 683
AgsI	TTSAA	6 cut(s)	355, 397, 626, 1243, 1480, 1546
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	4 cut(s)	42, 385, 1471, 1516
AjuI	GAANNNNNNNTTGG	2 cut(s)	1526, 1558
AluBI	AGCT	5 cut(s)	319, 599, 1603, 1898, 1982
AluI	AGCT	5 cut(s)	319, 599, 1603, 1898, 1982
Alw21I	GWGCWC	1 cut(s)	1691
Alw26I	GTCTC	3 cut(s)	153, 634, 1703
AlwI	GGATC	3 cut(s)	341, 785, 2015
AlwNI	CAGNNNCTG	1 cut(s)	1985
AoxI	GGCC	8 cut(s)	288, 313, 324, 388, 608, 665, 1098, 1314
ApeKI	GCWGC	7 cut(s)	12, 596, 932, 1166, 1841, 1898, 2238
ApoI	RAATTY	2 cut(s)	371, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	1459, 1491
Asp700I	GAANNNNTTC	1 cut(s)	1853
Asp718I	GGTACC	1 cut(s)	252
AspA2I	CCTAGG	1 cut(s)	202
AspLEI	GCGC	4 cut(s)	345, 443, 851, 1961
AsuC2I	CCSGG	3 cut(s)	741, 1672, 1719
AsuHPI	GGTGA	5 cut(s)	93, 412, 1165, 1333, 1420
AvaII	GGWCC	7 cut(s)	199, 258, 360, 867, 1024, 1115, 1805
AvrII	CCTAGG	1 cut(s)	202
BaeGI	GKGCMC	3 cut(s)	309, 1835, 2095
BaeI	ACNNNNGTAYC	2 cut(s)	2114, 2147
BalI	TGGCCA	2 cut(s)	610, 1316
BanI	GGYRCC	2 cut(s)	252, 440
BanII	GRGCYC	2 cut(s)	646, 840
BauI	CACGAG	2 cut(s)	650, 772
BbsI	GAAGAC	2 cut(s)	340, 2157
Bbv12I	GWGCWC	1 cut(s)	1691
BbvI	GCAGC	7 cut(s)	24, 608, 919, 1153, 1853, 1885, 2225
BccI	CCATC	9 cut(s)	290, 317, 360, 431, 1034, 1092, 1586, 1721, 2180
BceAI	ACGGC	3 cut(s)	680, 1113, 2201
BcgI	CGANNNNNNTGC	2 cut(s)	1954, 1988
BciT130I	CCWGG	4 cut(s)	44, 387, 1473, 1518
BclI	TGATCA	1 cut(s)	1369
BcnI	CCSGG	3 cut(s)	741, 1672, 1719
BcoDI	GTCTC	3 cut(s)	153, 634, 1703
BfaI	CTAG	5 cut(s)	72, 203, 330, 1403, 1629
BfmI	CTRYAG	2 cut(s)	715, 2211
BfoI	RGCGCY	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	8 cut(s)	13, 327, 597, 933, 1167, 1842, 1899, 2239
BlnI	CCTAGG	1 cut(s)	202
BlsI	GCNGC	8 cut(s)	14, 328, 598, 934, 1168, 1843, 1900, 2240
Bme1390I	CCNGG	7 cut(s)	44, 387, 741, 1473, 1518, 1672, 1719
Bme18I	GGWCC	7 cut(s)	199, 258, 360, 867, 1024, 1115, 1805
BmgBI	CACGTC	1 cut(s)	412
BmiI	GGNNCC	7 cut(s)	200, 208, 254, 361, 391, 442, 1660
BmrFI	CCNGG	7 cut(s)	44, 387, 741, 1473, 1518, 1672, 1719
BmsI	GCATC	2 cut(s)	1768, 2089
BoxI	GACNNNNGTC	2 cut(s)	344, 2157
BpiI	GAAGAC	2 cut(s)	340, 2157
BpmI	CTGGAG	1 cut(s)	1863
Bpu10I	CCTNAGC	1 cut(s)	1902
BpuEI	CTTGAG	2 cut(s)	1557, 1705
BpuMI	CCSGG	3 cut(s)	741, 1672, 1719
BsaAI	YACGTR	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	1703
BsaWI	WCCGGW	2 cut(s)	155, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	8 cut(s)	196, 322, 674, 774, 1210, 1391, 2118, 2169
Bse118I	RCCGGY	2 cut(s)	124, 1945
Bse1I	ACTGG	5 cut(s)	241, 869, 1526, 1856, 1880
Bse3DI	GCAATG	3 cut(s)	702, 1149, 1332
BseBI	CCWGG	4 cut(s)	44, 387, 1473, 1518
BseGI	GGATG	2 cut(s)	764, 1713
BseLI	CCNNNNNNNGG	8 cut(s)	196, 322, 674, 774, 1210, 1391, 2118, 2169
BseMI	GCAATG	3 cut(s)	702, 1149, 1332
BseMII	CTCAG	3 cut(s)	554, 1313, 1482
BseNI	ACTGG	5 cut(s)	241, 869, 1526, 1856, 1880
BseRI	GAGGAG	4 cut(s)	82, 215, 868, 2080
BseSI	GKGCMC	3 cut(s)	309, 1835, 2095
BseXI	GCAGC	7 cut(s)	24, 608, 919, 1153, 1853, 1885, 2225
BseYI	CCCAGC	3 cut(s)	558, 563, 810
BsgI	GTGCAG	2 cut(s)	170, 1152
Bsh1236I	CGCG	2 cut(s)	343, 345
BshFI	GGCC	8 cut(s)	290, 315, 326, 390, 610, 667, 1100, 1316
BshNI	GGYRCC	2 cut(s)	252, 440
BsiHKAI	GWGCWC	1 cut(s)	1691
BsiSI	CCGG	9 cut(s)	125, 156, 256, 438, 444, 741, 1671, 1719, 1946
BslFI	GGGAC	4 cut(s)	373, 1838, 2145, 2178
BslI	CCNNNNNNNGG	8 cut(s)	196, 322, 674, 774, 1210, 1391, 2118, 2169
BsmAI	GTCTC	3 cut(s)	153, 634, 1703
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	4 cut(s)	373, 1838, 2145, 2178
BsnI	GGCC	8 cut(s)	290, 315, 326, 390, 610, 667, 1100, 1316
Bso31I	GGTCTC	1 cut(s)	1703
Bsp1286I	GDGCHC	6 cut(s)	309, 646, 840, 1691, 1835, 2095
Bsp143I	GATC	5 cut(s)	333, 777, 816, 1369, 2007
Bsp19I	CCATGG	3 cut(s)	24, 908, 1204
BspACI	CCGC	2 cut(s)	327, 1988
BspANI	GGCC	8 cut(s)	290, 315, 326, 390, 610, 667, 1100, 1316
BspCNI	CTCAG	3 cut(s)	553, 1312, 1483
BspFNI	CGCG	2 cut(s)	343, 345
BspLI	GGNNCC	7 cut(s)	200, 208, 254, 361, 391, 442, 1660
BspPI	GGATC	3 cut(s)	341, 785, 2015
BspT107I	GGYRCC	2 cut(s)	252, 440
BspTNI	GGTCTC	1 cut(s)	1703
BsrDI	GCAATG	3 cut(s)	702, 1149, 1332
BsrFI	RCCGGY	2 cut(s)	124, 1945
BsrI	ACTGG	5 cut(s)	241, 869, 1526, 1856, 1880
BssAI	RCCGGY	2 cut(s)	124, 1945
BssMI	GATC	5 cut(s)	333, 777, 816, 1369, 2007
BssNAI	GTATAC	1 cut(s)	689
BssNI	GRCGYC	1 cut(s)	441
BssSI	CACGAG	2 cut(s)	650, 772
BssT1I	CCWWGG	7 cut(s)	24, 202, 669, 908, 1204, 1385, 2196
Bst1107I	GTATAC	1 cut(s)	689
Bst2BI	CACGAG	2 cut(s)	650, 772
Bst2UI	CCWGG	4 cut(s)	44, 387, 1473, 1518
Bst4CI	ACNGT	6 cut(s)	148, 270, 451, 475, 693, 1768
Bst6I	CTCTTC	1 cut(s)	1034
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	2099
BstBAI	YACGTR	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	317, 612, 904
BstDEI	CTNAG	5 cut(s)	540, 1299, 1491, 1861, 1902
BstDSI	CCRYGG	3 cut(s)	24, 908, 1204
BstF5I	GGATG	2 cut(s)	764, 1713
BstFNI	CGCG	2 cut(s)	343, 345
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	4 cut(s)	345, 443, 851, 1961
BstKTI	GATC	5 cut(s)	336, 780, 819, 1372, 2010
BstMAI	GTCTC	3 cut(s)	153, 634, 1703
BstMBI	GATC	5 cut(s)	333, 777, 816, 1369, 2007
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 287, 296, 929, 1904, 2099, 2108
BstNI	CCWGG	4 cut(s)	44, 387, 1473, 1518
BstNSI	RCATGY	2 cut(s)	1356, 1945
BstPAI	GACNNNNGTC	2 cut(s)	344, 2157
BstSCI	CCNGG	7 cut(s)	42, 385, 739, 1471, 1516, 1670, 1717
BstSFI	CTRYAG	2 cut(s)	715, 2211
BstSLI	GKGCMC	3 cut(s)	309, 1835, 2095
BstUI	CGCG	2 cut(s)	343, 345
BstV1I	GCAGC	7 cut(s)	24, 608, 919, 1153, 1853, 1885, 2225
BstV2I	GAAGAC	2 cut(s)	340, 2157
BstX2I	RGATCY	1 cut(s)	777
BstXI	CCANNNNNNTGG	2 cut(s)	1642, 2061
BstYI	RGATCY	1 cut(s)	777
BstZ17I	GTATAC	1 cut(s)	689
BsuRI	GGCC	8 cut(s)	290, 315, 326, 390, 610, 667, 1100, 1316
BtgI	CCRYGG	3 cut(s)	24, 908, 1204
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	764, 1713
BtsI	GCAGTG	2 cut(s)	918, 1851
BtsIMutI	CAGTG	5 cut(s)	266, 918, 1307, 1764, 1851
Cac8I	GCNNGC	3 cut(s)	317, 612, 904
CaiI	CAGNNNCTG	1 cut(s)	1985
CfoI	GCGC	4 cut(s)	345, 443, 851, 1961
Cfr10I	RCCGGY	2 cut(s)	124, 1945
CpoI	CGGWCCG	1 cut(s)	258
CseI	GACGC	4 cut(s)	208, 334, 349, 1770
CsiI	ACCWGGT	1 cut(s)	1471
Csp6I	GTAC	6 cut(s)	253, 1410, 1495, 1507, 1728, 2123
CspCI	CAANNNNNGTGG	2 cut(s)	1904, 1939
CspI	CGGWCCG	1 cut(s)	258
CviQI	GTAC	6 cut(s)	253, 1410, 1495, 1507, 1728, 2123
DdeI	CTNAG	5 cut(s)	540, 1299, 1491, 1861, 1902
DinI	GGCGCC	1 cut(s)	442
DpnI	GATC	5 cut(s)	335, 779, 818, 1371, 2009
DpnII	GATC	5 cut(s)	333, 777, 816, 1369, 2007
EaeI	YGGCCR	4 cut(s)	313, 324, 608, 1314
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Eco130I	CCWWGG	7 cut(s)	24, 202, 669, 908, 1204, 1385, 2196
Eco24I	GRGCYC	2 cut(s)	646, 840
Eco31I	GGTCTC	1 cut(s)	1703
Eco32I	GATATC	1 cut(s)	1523
Eco47I	GGWCC	7 cut(s)	199, 258, 360, 867, 1024, 1115, 1805
Eco57I	CTGAAG	1 cut(s)	1361
EcoO109I	RGGNCCY	2 cut(s)	199, 1024
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	4 cut(s)	42, 385, 1471, 1516
EcoRV	GATATC	1 cut(s)	1523
EcoT14I	CCWWGG	7 cut(s)	24, 202, 669, 908, 1204, 1385, 2196
EcoT38I	GRGCYC	2 cut(s)	646, 840
EgeI	GGCGCC	1 cut(s)	442
EheI	GGCGCC	1 cut(s)	442
ErhI	CCWWGG	7 cut(s)	24, 202, 669, 908, 1204, 1385, 2196
Esp3I	CGTCTC	1 cut(s)	153
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FaqI	GGGAC	4 cut(s)	373, 1838, 2145, 2178
FauNDI	CATATG	4 cut(s)	971, 1724, 1790, 1837
FbaI	TGATCA	1 cut(s)	1369
FblI	GTMKAC	4 cut(s)	453, 688, 990, 1680
Fnu4HI	GCNGC	8 cut(s)	13, 327, 597, 933, 1167, 1842, 1899, 2239
FokI	GGATG	2 cut(s)	751, 1700
FriOI	GRGCYC	2 cut(s)	646, 840
Fsp4HI	GCNGC	8 cut(s)	13, 327, 597, 933, 1167, 1842, 1899, 2239
FspBI	CTAG	5 cut(s)	72, 203, 330, 1403, 1629
GlaI	GCGC	4 cut(s)	344, 442, 850, 1960
GluI	GCNGC	8 cut(s)	13, 327, 597, 933, 1167, 1842, 1899, 2239
GsaI	CCCAGC	3 cut(s)	562, 567, 814
GsuI	CTGGAG	1 cut(s)	1863
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	8 cut(s)	290, 315, 326, 390, 610, 667, 1100, 1316
HapII	CCGG	9 cut(s)	125, 156, 256, 438, 444, 741, 1671, 1719, 1946
HgaI	GACGC	4 cut(s)	208, 334, 349, 1770
HhaI	GCGC	4 cut(s)	345, 443, 851, 1961
Hin1I	GRCGYC	1 cut(s)	441
Hin6I	GCGC	4 cut(s)	343, 441, 849, 1959
HinP1I	GCGC	4 cut(s)	343, 441, 849, 1959
HincII	GTYRAC	3 cut(s)	762, 963, 1993
HindII	GTYRAC	3 cut(s)	762, 963, 1993
HindIII	AAGCTT	1 cut(s)	1601
HinfI	GANTC	7 cut(s)	20, 843, 964, 1073, 1570, 1927, 1932
HpaI	GTTAAC	2 cut(s)	762, 1993
HpaII	CCGG	9 cut(s)	125, 156, 256, 438, 444, 741, 1671, 1719, 1946
HphI	GGTGA	5 cut(s)	93, 412, 1165, 1333, 1420
Hpy188I	TCNGA	8 cut(s)	191, 575, 842, 890, 1021, 1326, 1467, 1800
Hpy188III	TCNNGA	4 cut(s)	72, 181, 337, 1046
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	9 cut(s)	74, 182, 196, 403, 718, 1015, 1106, 1203, 1409
HpyCH4III	ACNGT	6 cut(s)	148, 270, 451, 475, 693, 1768
HpyCH4IV	ACGT	5 cut(s)	399, 411, 506, 685, 987
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 287, 296, 929, 1904, 2099, 2108
HpyF3I	CTNAG	5 cut(s)	540, 1299, 1491, 1861, 1902
HpySE526I	ACGT	5 cut(s)	399, 411, 506, 685, 987
Hsp92I	GRCGYC	1 cut(s)	441
HspAI	GCGC	4 cut(s)	343, 441, 849, 1959
KasI	GGCGCC	1 cut(s)	440
KpnI	GGTACC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	1369
KspAI	GTTAAC	2 cut(s)	762, 1993
Kzo9I	GATC	5 cut(s)	333, 777, 816, 1369, 2007
LmnI	GCTCC	3 cut(s)	130, 1222, 1882
Lsp1109I	GCAGC	7 cut(s)	24, 608, 919, 1153, 1853, 1885, 2225
LweI	GCATC	2 cut(s)	1768, 2089
MabI	ACCWGGT	1 cut(s)	1471
MaeI	CTAG	5 cut(s)	72, 203, 330, 1403, 1629
MaeII	ACGT	5 cut(s)	399, 411, 506, 685, 987
MaeIII	GTNAC	3 cut(s)	469, 578, 679
MalI	GATC	5 cut(s)	335, 779, 818, 1371, 2009
MboI	GATC	5 cut(s)	333, 777, 816, 1369, 2007
MfeI	CAATTG	2 cut(s)	1872, 2164
MflI	RGATCY	1 cut(s)	777
MhlI	GDGCHC	6 cut(s)	309, 646, 840, 1691, 1835, 2095
MlsI	TGGCCA	2 cut(s)	610, 1316
MluCI	AATT	7 cut(s)	371, 616, 1078, 1455, 1872, 1953, 2164
MluNI	TGGCCA	2 cut(s)	610, 1316
Mly113I	GGCGCC	1 cut(s)	441
MlyI	GAGTC	5 cut(s)	837, 958, 1067, 1564, 1926
MmeI	TCCRAC	2 cut(s)	1636, 2122
Mox20I	TGGCCA	2 cut(s)	610, 1316
MroXI	GAANNNNTTC	1 cut(s)	1853
MscI	TGGCCA	2 cut(s)	610, 1316
MseI	TTAA	7 cut(s)	480, 761, 984, 1089, 1599, 1952, 1992
MslI	CAYNNNNRTG	5 cut(s)	956, 1565, 1640, 1940, 2076
Msp20I	TGGCCA	2 cut(s)	610, 1316
MspI	CCGG	9 cut(s)	125, 156, 256, 438, 444, 741, 1671, 1719, 1946
MspR9I	CCNGG	7 cut(s)	44, 387, 741, 1473, 1518, 1672, 1719
MunI	CAATTG	2 cut(s)	1872, 2164
MvaI	CCWGG	4 cut(s)	44, 387, 1473, 1518
MvnI	CGCG	2 cut(s)	343, 345
MwoI	GCNNNNNNNGC	7 cut(s)	130, 287, 296, 929, 1904, 2099, 2108
NarI	GGCGCC	1 cut(s)	441
NciI	CCSGG	3 cut(s)	741, 1672, 1719
NcoI	CCATGG	3 cut(s)	24, 908, 1204
NdeI	CATATG	4 cut(s)	971, 1724, 1790, 1837
NdeII	GATC	5 cut(s)	333, 777, 816, 1369, 2007
NlaIV	GGNNCC	7 cut(s)	200, 208, 254, 361, 391, 442, 1660
NmeAIII	GCCGAG	1 cut(s)	266
NmuCI	GTSAC	2 cut(s)	469, 679
NspI	RCATGY	2 cut(s)	1356, 1945
PdmI	GAANNNNTTC	1 cut(s)	1853
PfeI	GAWTC	2 cut(s)	20, 1927
PflMI	CCANNNNNTGG	2 cut(s)	322, 2169
PkrI	GCNGC	8 cut(s)	14, 328, 598, 934, 1168, 1843, 1900, 2240
PleI	GAGTC	5 cut(s)	837, 958, 1067, 1564, 1926
PluTI	GGCGCC	1 cut(s)	444
PpsI	GAGTC	5 cut(s)	837, 958, 1067, 1564, 1926
Ppu21I	YACGTR	1 cut(s)	686
PpuMI	RGGWCCY	2 cut(s)	199, 1024
PshAI	GACNNNNGTC	2 cut(s)	344, 2157
PsiI	TTATAA	1 cut(s)	533
Psp5II	RGGWCCY	2 cut(s)	199, 1024
Psp6I	CCWGG	4 cut(s)	42, 385, 1471, 1516
PspFI	CCCAGC	3 cut(s)	558, 563, 810
PspGI	CCWGG	4 cut(s)	42, 385, 1471, 1516
PspN4I	GGNNCC	7 cut(s)	200, 208, 254, 361, 391, 442, 1660
PspPPI	RGGWCCY	2 cut(s)	199, 1024
PstNI	CAGNNNCTG	1 cut(s)	1985
PsuI	RGATCY	1 cut(s)	777
RsaI	GTAC	6 cut(s)	254, 1411, 1496, 1508, 1729, 2124
RsaNI	GTAC	6 cut(s)	253, 1410, 1495, 1507, 1728, 2123
RseI	CAYNNNNRTG	5 cut(s)	956, 1565, 1640, 1940, 2076
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SaqAI	TTAA	7 cut(s)	480, 761, 984, 1089, 1599, 1952, 1992
SatI	GCNGC	8 cut(s)	13, 327, 597, 933, 1167, 1842, 1899, 2239
Sau3AI	GATC	5 cut(s)	333, 777, 816, 1369, 2007
SchI	GAGTC	5 cut(s)	837, 958, 1067, 1564, 1926
ScrFI	CCNGG	7 cut(s)	44, 387, 741, 1473, 1518, 1672, 1719
SduI	GDGCHC	6 cut(s)	309, 646, 840, 1691, 1835, 2095
SexAI	ACCWGGT	1 cut(s)	1471
SfaNI	GCATC	2 cut(s)	1768, 2089
SfcI	CTRYAG	2 cut(s)	715, 2211
SfoI	GGCGCC	1 cut(s)	442
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	7 cut(s)	199, 258, 360, 867, 1024, 1115, 1805
SmiMI	CAYNNNNRTG	5 cut(s)	956, 1565, 1640, 1940, 2076
SmlI	CTYRAG	2 cut(s)	1572, 1684
SmoI	CTYRAG	2 cut(s)	1572, 1684
Sse9I	AATT	7 cut(s)	371, 616, 1078, 1455, 1872, 1953, 2164
SsiI	CCGC	2 cut(s)	327, 1988
SspDI	GGCGCC	1 cut(s)	440
SspI	AATATT	2 cut(s)	1093, 1818
SspMI	CTAG	5 cut(s)	72, 203, 330, 1403, 1629
StyD4I	CCNGG	7 cut(s)	42, 385, 739, 1471, 1516, 1670, 1717
StyI	CCWWGG	7 cut(s)	24, 202, 669, 908, 1204, 1385, 2196
TaaI	ACNGT	6 cut(s)	148, 270, 451, 475, 693, 1768
TaiI	ACGT	5 cut(s)	402, 414, 509, 688, 990
TaqI	TCGA	3 cut(s)	272, 588, 1930
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	7 cut(s)	371, 616, 1078, 1455, 1872, 1953, 2164
TatI	WGTACW	3 cut(s)	1409, 1494, 1727
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	20, 1927
Tru1I	TTAA	7 cut(s)	480, 761, 984, 1089, 1599, 1952, 1992
Tru9I	TTAA	7 cut(s)	480, 761, 984, 1089, 1599, 1952, 1992
TscAI	CASTG	5 cut(s)	273, 925, 1307, 1771, 1851
TseFI	GTSAC	2 cut(s)	469, 679
TseI	GCWGC	7 cut(s)	12, 596, 932, 1166, 1841, 1898, 2238
Tsp45I	GTSAC	2 cut(s)	469, 679
TspDTI	ATGAA	6 cut(s)	93, 452, 700, 1178, 1630, 1631
TspRI	CASTG	5 cut(s)	273, 925, 1307, 1771, 1851
Van91I	CCANNNNNTGG	2 cut(s)	322, 2169
VpaK11BI	GGWCC	7 cut(s)	199, 258, 360, 867, 1024, 1115, 1805
XapI	RAATTY	2 cut(s)	371, 616
XbaI	TCTAGA	1 cut(s)	71
XceI	RCATGY	2 cut(s)	1356, 1945
XcmI	CCANNNNNNNNNTGG	3 cut(s)	600, 1887, 1920
XmaJI	CCTAGG	1 cut(s)	202
XmiI	GTMKAC	4 cut(s)	453, 688, 990, 1680
XmnI	GAANNNNTTC	1 cut(s)	1853
XspI	CTAG	5 cut(s)	72, 203, 330, 1403, 1629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.