Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Reverse (-)

81278188 .. 81281475

Gene Structure 3288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGACTATTGCACCCGAAATCACATCCCCTCTTCTTCAGAACAAGAACAATAACTATGCTTCGGTTTCATCTCCGGCGCCGGAGGAAAATTCCCCGATCGAGCAAGTCGCACTCACCGTTCCGGTCACCGACGACCCTTCCCTCCCGGCCGTCACGTTCCGAACATGGACGCTCGGATCCCTCGCGTGTGTTCTGCTCTCCTTCCTCAACCAATTCTTCTGGTACCGGAGAGAGCCTCTCTCCCTGACCTCGATCTCCGCGCAGATCGCAGTGGTCCCGCTCGGCCACCTCATGGCCTCCGTCCTCACCGACCGGATCTTCTTCCAGGGGCGGAAATGGGAATTCACGCTCAACCCGGGGCCGTTCAATGTCAAGGAGCACGTGCTCATCACGATCTTCGCCAACTCCGGCGCCGGCAACGTCTACGCGATCCACATAGTGAGCACCATCAAGGTCTTTTACAAGAAGAACATGTCGTTTTGGGTGGCGCTGCTCGTCGTTTTGACCACTCAGGTCTTGGGGTTCGGCTGGGCCGGGCTTTTCCGCCGGTACTTGGTCCAGCCCGCCGCCATGTGGTGGCCTCATAATCTCGTCCAGGTTTCCCTCTTCAGAGCATTGCATGAAAAGGAGGAGAGGCCAAGAGGTGGATTGACAAGGAATCAGTTCTTCCTCATTGCTTTCACTTGCAGCTTTGCTTATTATGTTCTTCCGGGCTACTTATTCCCAATGTTATCTTCCCTTTCCTGGGTCTGCTGGATCTTCCCTGCTTCAGTTCTAGCCCATCAGCTAGGGTCAGGACTGCATGGTCTTGGCATCGGTGCTATCGGTCTCGATTGGTCCAGCATTTCCTCTTACCTTGGAAGCCCACTTGCCAGTCCATGGTTTGCTACTGCTAATGTTGCTGCTGGTTTTGCCCTTGTGATGTATGTCATTACTCCTGTGGCTTATTGGCTCAATGTGTATAAAGCAAAAACCTTCCCCATATTCTCGGATGGATTGTTCACGTCCACTGGCCAAAGCTACAACATTTCAGCTATAATAGACCCCAACTTCCGGCTTGACATTGATGCATACGAGCGAGAGGGTCCTCTCCATATCAGTACCTTTTTTGCTATCAACTATGGTGTCAATTTTGCTTGCCTTACTGCCACTGTTGTTCATGTTCTCCTCTTCAATGGGAGAGACATCTGGGAGCTAAGCAAGTCTGCCTTCCAAGAGAAGAAGACAGATGTGCACACAAAGCTCATGAGAAGATATAAGCAAGTCCCTGGATGGTGGAATGCCCTGAAGATGCCAACTTTGAATGTGATCACAGAGTACATAATTGGGTATCTGTATCCGGGATATCCAGCTGCTAACATATTATTCAAAGTATATGGACACATAAGCATGAAACAAGGAATCAATTTTCTCGAAGACTTCAAGCTTGGACACTACATGAAGATTGCTCCTCGAGCAATGTTCATGGCACAGGTAGTTGGTACTATCATAGCAGCACTTGTGCATTTGGGAACTGCATGGTGGCTTATGAGCACAATCCCTGACATATGCAACAGGGCGTTACTACCAGCAGAGAGCCCATGGACTTGCCCCGGTGACCATGTCTTCTACGATGCTTCTGTTATCTGGGGCCTTGTCGGGCCTCGCAGAATCTTTGGGGACCTTGGCTACTATTCGGCTATCAACTGGTTTTTCTTAGCTGGGGCTATAGCTCCTGCCCTTGTTTGGCTTGCACACAAGGCCTTCCCAACCAAACAATGGATTAGACTTATTACAATGCCTGTGCTCTTAGGGACAGTAGTCAACATGCCTCCAGCTACTGCTGTGAATTTCACTAGCTGGATCCTCATTGGATTCGCCTCAGGCTTTGTTGCTTACAGGTACTACCGCAGCTGGTGGAGCCGCCATAACTATGTGCTATCTGGAGCTCTGGATGCTGGATTAGCCTTTATGGCGGTAATTTTGTACTTGTGTCTAGGGATGCAACATGTCCACTTAAAATGGTGGGGAAGTACGCCGGATGGTTGCCCGTTGGCTTCTTGCTCAACGGAGCCAGGTGTTCTGATTAAGGGCTGTCCATTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

695

Amino Acids

77.65

Weight (kDa)

9.07

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	51 - 427	5.8e-95	OPT oligopeptide transporter protein
OPT	PF03169	433 - 658	7.3e-57	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	804
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	3 cut(s)	76, 222, 410
AccB7I	CCANNNNNTGG	5 cut(s)	292, 576, 644, 879, 1758
AccBSI	CCGCTC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	3 cut(s)	185, 260, 428
AciI	CCGC	9 cut(s)	258, 278, 331, 544, 564, 567, 1888, 1903, 1955
AclWI	GGATC	7 cut(s)	171, 184, 323, 424, 764, 1837, 1850
AcoI	YGGCCR	3 cut(s)	147, 283, 1012
AcsI	RAATTY	3 cut(s)	88, 341, 1828
AcuI	CTGAAG	4 cut(s)	20, 592, 753, 1307
AcvI	CACGTG	1 cut(s)	382
AcyI	GRCGYC	2 cut(s)	77, 411
AdeI	CACNNNGTG	1 cut(s)	439
AfaI	GTAC	8 cut(s)	224, 551, 1102, 1319, 1483, 1883, 1967, 2014
AflIII	ACRYGT	2 cut(s)	471, 1987
AgsI	TTSAA	5 cut(s)	367, 1174, 1303, 1369, 1423
AjiI	CACGTC	1 cut(s)	1005
AjnI	CCWGG	5 cut(s)	324, 594, 743, 1267, 2053
AjuI	GAANNNNNNNTTGG	2 cut(s)	718, 750
AloI	GAACNNNNNNTCC	2 cut(s)	983, 1015
Alw21I	GWGCWC	7 cut(s)	381, 387, 446, 1236, 1535, 1788, 1930
Alw26I	GTCTC	2 cut(s)	833, 1176
Alw44I	GTGCAC	1 cut(s)	1232
AlwI	GGATC	7 cut(s)	171, 184, 323, 424, 764, 1837, 1850
AlwNI	CAGNNNCTG	1 cut(s)	1820
Ama87I	CYCGRG	2 cut(s)	355, 1452
ApaLI	GTGCAC	1 cut(s)	1232
ApeKI	GCWGC	6 cut(s)	490, 687, 902, 1352, 1493, 1890
ApoI	RAATTY	3 cut(s)	88, 341, 1828
Asp700I	GAANNNNTTC	1 cut(s)	662
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	4 cut(s)	79, 262, 413, 490
AspS9I	GGNCC	9 cut(s)	274, 359, 531, 556, 837, 1085, 1630, 1640, 1660
AsuC2I	CCSGG	7 cut(s)	146, 356, 357, 535, 711, 1341, 1593
AsuHPI	GGTGA	4 cut(s)	106, 118, 298, 1607
AvaI	CYCGRG	2 cut(s)	355, 1452
AvaII	GGWCC	5 cut(s)	274, 556, 837, 1085, 1660
AxyI	CCTNAGG	1 cut(s)	1861
BaeGI	GKGCMC	1 cut(s)	1236
BalI	TGGCCA	1 cut(s)	1014
BamHI	GGATCC	2 cut(s)	176, 1842
BanI	GGYRCC	3 cut(s)	76, 222, 410
BanII	GRGCYC	2 cut(s)	1580, 1930
BbrPI	CACGTG	1 cut(s)	382
BbsI	GAAGAC	3 cut(s)	1229, 1422, 1597
Bbv12I	GWGCWC	7 cut(s)	381, 387, 446, 1236, 1535, 1788, 1930
BbvI	GCAGC	6 cut(s)	477, 699, 889, 1339, 1505, 1902
BccI	CCATC	5 cut(s)	455, 789, 986, 1266, 2015
BceAI	ACGGC	2 cut(s)	134, 346
BciT130I	CCWGG	5 cut(s)	326, 596, 745, 1269, 2055
BciVI	GTATCC	1 cut(s)	1347
BclI	TGATCA	1 cut(s)	1308
BcnI	CCSGG	7 cut(s)	146, 356, 357, 535, 711, 1341, 1593
BcoDI	GTCTC	2 cut(s)	833, 1176
BfaI	CTAG	4 cut(s)	776, 788, 1836, 1976
BfmI	CTRYAG	1 cut(s)	1707
BfoI	RGCGCY	3 cut(s)	80, 414, 491
BfuI	GTATCC	1 cut(s)	1347
BglI	GCCNNNNNGGC	1 cut(s)	1952
BisI	GCNGC	8 cut(s)	491, 567, 688, 903, 1353, 1494, 1891, 1903
BlpI	GCTNAGC	1 cut(s)	1196
BlsI	GCNGC	8 cut(s)	492, 568, 689, 904, 1354, 1495, 1892, 1904
Bme18I	GGWCC	5 cut(s)	274, 556, 837, 1085, 1660
BmeT110I	CYCGRG	2 cut(s)	355, 1452
BmgBI	CACGTC	1 cut(s)	1005
BmgT120I	GGNCC	9 cut(s)	274, 359, 531, 556, 837, 1085, 1630, 1640, 1660
BmsI	GCATC	6 cut(s)	822, 1057, 1281, 1603, 1924, 1971
BoxI	GACNNNNGTC	1 cut(s)	1799
BpiI	GAAGAC	3 cut(s)	1229, 1422, 1597
BplI	GAGNNNNNCTC	6 cut(s)	220, 252, 222, 254, 224, 256
BpmI	CTGGAG	2 cut(s)	1797, 1944
Bpu1102I	GCTNAGC	1 cut(s)	1196
BpuMI	CCSGG	7 cut(s)	146, 356, 357, 535, 711, 1341, 1593
BsaAI	YACGTR	1 cut(s)	382
BsaHI	GRCGYC	2 cut(s)	77, 411
BsaI	GGTCTC	1 cut(s)	833
BsaWI	WCCGGW	3 cut(s)	121, 225, 312
Bse118I	RCCGGY	2 cut(s)	413, 546
Bse1I	ACTGG	3 cut(s)	873, 1015, 1691
Bse21I	CCTNAGG	1 cut(s)	1861
Bse3DI	GCAATG	3 cut(s)	614, 672, 1464
BseBI	CCWGG	5 cut(s)	326, 596, 745, 1269, 2055
BseGI	GGATG	6 cut(s)	23, 997, 1277, 1939, 1986, 2026
BseMI	GCAATG	3 cut(s)	614, 672, 1464
BseMII	CTCAG	2 cut(s)	524, 1875
BseNI	ACTGG	3 cut(s)	873, 1015, 1691
BseRI	GAGGAG	3 cut(s)	644, 1157, 1440
BseSI	GKGCMC	1 cut(s)	1236
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	6 cut(s)	477, 699, 889, 1339, 1505, 1902
BseYI	CCCAGC	2 cut(s)	528, 1700
Bsh1236I	CGCG	3 cut(s)	185, 260, 428
Bsh1285I	CGRYCG	3 cut(s)	99, 150, 313
BshNI	GGYRCC	3 cut(s)	76, 222, 410
BsiEI	CGRYCG	3 cut(s)	99, 150, 313
BsiHKAI	GWGCWC	7 cut(s)	381, 387, 446, 1236, 1535, 1788, 1930
BsiHKCI	CYCGRG	2 cut(s)	355, 1452
BslFI	GGGAC	4 cut(s)	260, 1250, 1673, 1807
BsmAI	GTCTC	2 cut(s)	833, 1176
BsmFI	GGGAC	4 cut(s)	260, 1250, 1673, 1807
BsmI	GAATGC	1 cut(s)	1285
Bso31I	GGTCTC	1 cut(s)	833
BsoBI	CYCGRG	2 cut(s)	355, 1452
Bsp1286I	GDGCHC	8 cut(s)	381, 387, 446, 1236, 1535, 1580, 1788, 1930
Bsp1720I	GCTNAGC	1 cut(s)	1196
Bsp19I	CCATGG	2 cut(s)	878, 1580
BspACI	CCGC	9 cut(s)	258, 278, 331, 544, 564, 567, 1888, 1903, 1955
BspCNI	CTCAG	2 cut(s)	523, 1874
BspFNI	CGCG	3 cut(s)	185, 260, 428
BspHI	TCATGA	1 cut(s)	1245
BspPI	GGATC	7 cut(s)	171, 184, 323, 424, 764, 1837, 1850
BspT107I	GGYRCC	3 cut(s)	76, 222, 410
BspTNI	GGTCTC	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	3 cut(s)	614, 672, 1464
BsrFI	RCCGGY	2 cut(s)	413, 546
BsrI	ACTGG	3 cut(s)	873, 1015, 1691
BssAI	RCCGGY	2 cut(s)	413, 546
BssNI	GRCGYC	2 cut(s)	77, 411
BssT1I	CCWWGG	4 cut(s)	856, 878, 1580, 1663
Bst2UI	CCWGG	5 cut(s)	326, 596, 745, 1269, 2055
Bst4CI	ACNGT	3 cut(s)	118, 1153, 1798
Bst6I	CTCTTC	3 cut(s)	36, 611, 1175
BstACI	GRCGYC	2 cut(s)	77, 411
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	4 cut(s)	415, 564, 1138, 1731
BstDEI	CTNAG	5 cut(s)	510, 1196, 1696, 1789, 1861
BstDSI	CCRYGG	2 cut(s)	878, 1580
BstEII	GGTNACC	2 cut(s)	124, 1595
BstF5I	GGATG	6 cut(s)	23, 997, 1277, 1939, 1986, 2026
BstFNI	CGCG	3 cut(s)	185, 260, 428
BstH2I	RGCGCY	3 cut(s)	80, 414, 491
BstHHI	GCGC	4 cut(s)	79, 262, 413, 490
BstMAI	GTCTC	2 cut(s)	833, 1176
BstMCI	CGRYCG	3 cut(s)	99, 150, 313
BstNI	CCWGG	5 cut(s)	326, 596, 745, 1269, 2055
BstNSI	RCATGY	3 cut(s)	475, 1810, 1991
BstPAI	GACNNNNGTC	1 cut(s)	1799
BstPI	GGTNACC	2 cut(s)	124, 1595
BstSFI	CTRYAG	1 cut(s)	1707
BstSLI	GKGCMC	1 cut(s)	1236
BstUI	CGCG	3 cut(s)	185, 260, 428
BstV1I	GCAGC	6 cut(s)	477, 699, 889, 1339, 1505, 1902
BstV2I	GAAGAC	3 cut(s)	1229, 1422, 1597
BstX2I	RGATCY	4 cut(s)	176, 315, 756, 1842
BstYI	RGATCY	4 cut(s)	176, 315, 756, 1842
BstZI	CGGCCG	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	1861
BsuI	GTATCC	1 cut(s)	1347
BtgI	CCRYGG	2 cut(s)	878, 1580
BtrI	CACGTC	1 cut(s)	1005
BtsCI	GGATG	6 cut(s)	23, 997, 1277, 1939, 1986, 2026
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	276, 1008, 1149
Cac8I	GCNNGC	4 cut(s)	415, 564, 1138, 1731
CaiI	CAGNNNCTG	1 cut(s)	1820
CciI	TCATGA	1 cut(s)	1245
CfoI	GCGC	4 cut(s)	79, 262, 413, 490
Cfr10I	RCCGGY	2 cut(s)	413, 546
Cfr13I	GGNCC	9 cut(s)	274, 359, 531, 556, 837, 1085, 1630, 1640, 1660
Cfr9I	CCCGGG	1 cut(s)	355
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	8 cut(s)	223, 550, 1101, 1318, 1482, 1882, 1966, 2013
CviQI	GTAC	8 cut(s)	223, 550, 1101, 1318, 1482, 1882, 1966, 2013
DdeI	CTNAG	5 cut(s)	510, 1196, 1696, 1789, 1861
DinI	GGCGCC	2 cut(s)	78, 412
DraIII	CACNNNGTG	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	804
DseDI	GACNNNNNNGTC	1 cut(s)	804
EaeI	YGGCCR	3 cut(s)	147, 283, 1012
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	36, 611, 1175
EarI	CTCTTC	3 cut(s)	36, 611, 1175
EciI	GGCGGA	2 cut(s)	346, 533
Ecl136II	GAGCTC	1 cut(s)	1928
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	4 cut(s)	856, 878, 1580, 1663
Eco147I	AGGCCT	1 cut(s)	1742
Eco24I	GRGCYC	2 cut(s)	1580, 1930
Eco31I	GGTCTC	1 cut(s)	833
Eco32I	GATATC	1 cut(s)	1346
Eco47I	GGWCC	5 cut(s)	274, 556, 837, 1085, 1660
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	1928
Eco57I	CTGAAG	4 cut(s)	20, 592, 753, 1307
Eco72I	CACGTG	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	1861
Eco88I	CYCGRG	2 cut(s)	355, 1452
Eco91I	GGTNACC	2 cut(s)	124, 1595
EcoICRI	GAGCTC	1 cut(s)	1928
EcoO109I	RGGNCCY	3 cut(s)	1085, 1630, 1660
EcoO65I	GGTNACC	2 cut(s)	124, 1595
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	5 cut(s)	324, 594, 743, 1267, 2053
EcoRV	GATATC	1 cut(s)	1346
EcoT14I	CCWWGG	4 cut(s)	856, 878, 1580, 1663
EcoT22I	ATGCAT	1 cut(s)	1072
EcoT38I	GRGCYC	2 cut(s)	1580, 1930
EgeI	GGCGCC	2 cut(s)	78, 412
EheI	GGCGCC	2 cut(s)	78, 412
ErhI	CCWWGG	4 cut(s)	856, 878, 1580, 1663
FalI	AAGNNNNNCTT	2 cut(s)	1193, 1225
FaqI	GGGAC	4 cut(s)	260, 1250, 1673, 1807
FauI	CCCGC	2 cut(s)	285, 571
FauNDI	CATATG	1 cut(s)	1547
FbaI	TGATCA	1 cut(s)	1308
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	8 cut(s)	491, 567, 688, 903, 1353, 1494, 1891, 1903
FokI	GGATG	6 cut(s)	10, 1004, 1284, 1946, 1993, 2033
FriOI	GRGCYC	2 cut(s)	1580, 1930
Fsp4HI	GCNGC	8 cut(s)	491, 567, 688, 903, 1353, 1494, 1891, 1903
FspBI	CTAG	4 cut(s)	776, 788, 1836, 1976
GlaI	GCGC	4 cut(s)	78, 261, 412, 489
GluI	GCNGC	8 cut(s)	491, 567, 688, 903, 1353, 1494, 1891, 1903
GsaI	CCCAGC	2 cut(s)	532, 1704
GsuI	CTGGAG	2 cut(s)	1797, 1944
HaeII	RGCGCY	3 cut(s)	80, 414, 491
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	4 cut(s)	79, 262, 413, 490
Hin1I	GRCGYC	2 cut(s)	77, 411
Hin6I	GCGC	4 cut(s)	77, 260, 411, 488
HinP1I	GCGC	4 cut(s)	77, 260, 411, 488
HincII	GTYRAC	1 cut(s)	1804
HindII	GTYRAC	1 cut(s)	1804
HindIII	AAGCTT	1 cut(s)	1424
HinfI	GANTC	4 cut(s)	658, 1401, 1650, 1854
HphI	GGTGA	4 cut(s)	106, 118, 298, 1607
Hpy166II	GTNNAC	6 cut(s)	424, 1002, 1008, 1234, 1804, 1993
Hpy188I	TCNGA	6 cut(s)	39, 161, 176, 611, 991, 2064
Hpy188III	TCNNGA	7 cut(s)	391, 795, 830, 1246, 1412, 1923, 1931
Hpy8I	GTNNAC	6 cut(s)	424, 1002, 1008, 1234, 1804, 1993
Hpy99I	CGWCG	2 cut(s)	134, 500
HpyAV	CCTTC	5 cut(s)	147, 211, 985, 1219, 1753
HpyCH4III	ACNGT	3 cut(s)	118, 1153, 1798
HpyCH4IV	ACGT	4 cut(s)	155, 381, 420, 1004
HpyF3I	CTNAG	5 cut(s)	510, 1196, 1696, 1789, 1861
HpySE526I	ACGT	4 cut(s)	155, 381, 420, 1004
Hsp92I	GRCGYC	2 cut(s)	77, 411
HspAI	GCGC	4 cut(s)	77, 260, 411, 488
KasI	GGCGCC	2 cut(s)	76, 410
KpnI	GGTACC	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	1308
LmnI	GCTCC	7 cut(s)	376, 1192, 1453, 1717, 1899, 1925, 2050
Lsp1109I	GCAGC	6 cut(s)	477, 699, 889, 1339, 1505, 1902
LweI	GCATC	6 cut(s)	822, 1057, 1281, 1603, 1924, 1971
MaeI	CTAG	4 cut(s)	776, 788, 1836, 1976
MaeII	ACGT	4 cut(s)	155, 381, 420, 1004
MaeIII	GTNAC	4 cut(s)	124, 151, 1560, 1595
MbiI	CCGCTC	1 cut(s)	280
MflI	RGATCY	4 cut(s)	176, 315, 756, 1842
MhlI	GDGCHC	8 cut(s)	381, 387, 446, 1236, 1535, 1580, 1788, 1930
MlsI	TGGCCA	1 cut(s)	1014
MluCI	AATT	8 cut(s)	88, 212, 341, 1129, 1323, 1405, 1828, 1959
MluNI	TGGCCA	1 cut(s)	1014
Mly113I	GGCGCC	2 cut(s)	77, 411
Mox20I	TGGCCA	1 cut(s)	1014
Mph1103I	ATGCAT	1 cut(s)	1072
MroNI	GCCGGC	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	662
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	2 cut(s)	1997, 2067
MslI	CAYNNNNRTG	3 cut(s)	1388, 1911, 2083
Msp20I	TGGCCA	1 cut(s)	1014
MspA1I	CMGCKG	2 cut(s)	1352, 1893
Mva1269I	GAATGC	1 cut(s)	1285
MvaI	CCWGG	5 cut(s)	326, 596, 745, 1269, 2055
MvnI	CGCG	3 cut(s)	185, 260, 428
NaeI	GCCGGC	1 cut(s)	415
NarI	GGCGCC	2 cut(s)	77, 411
NciI	CCSGG	7 cut(s)	146, 356, 357, 535, 711, 1341, 1593
NcoI	CCATGG	2 cut(s)	878, 1580
NdeI	CATATG	1 cut(s)	1547
NgoMIV	GCCGGC	1 cut(s)	413
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	3 cut(s)	124, 151, 1595
NsiI	ATGCAT	1 cut(s)	1072
NspI	RCATGY	3 cut(s)	475, 1810, 1991
PaeR7I	CTCGAG	1 cut(s)	1452
PagI	TCATGA	1 cut(s)	1245
PceI	AGGCCT	1 cut(s)	1742
PciI	ACATGT	2 cut(s)	471, 1987
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	1285
PdiI	GCCGGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	4 cut(s)	658, 1401, 1650, 1854
PflFI	GACNNNGTC	1 cut(s)	1601
PflMI	CCANNNNNTGG	5 cut(s)	292, 576, 644, 879, 1758
PfoI	TCCNGGA	1 cut(s)	1339
PkrI	GCNGC	8 cut(s)	492, 568, 689, 904, 1354, 1495, 1892, 1904
Ple19I	CGATCG	1 cut(s)	99
PluTI	GGCGCC	2 cut(s)	80, 414
PmaCI	CACGTG	1 cut(s)	382
PmlI	CACGTG	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	382
PpuMI	RGGWCCY	2 cut(s)	1085, 1660
PscI	ACATGT	2 cut(s)	471, 1987
PshAI	GACNNNNGTC	1 cut(s)	1799
Psp124BI	GAGCTC	1 cut(s)	1930
Psp5II	RGGWCCY	2 cut(s)	1085, 1660
Psp6I	CCWGG	5 cut(s)	324, 594, 743, 1267, 2053
PspCI	CACGTG	1 cut(s)	382
PspEI	GGTNACC	2 cut(s)	124, 1595
PspFI	CCCAGC	2 cut(s)	528, 1700
PspGI	CCWGG	5 cut(s)	324, 594, 743, 1267, 2053
PspPI	GGNCC	9 cut(s)	274, 359, 531, 556, 837, 1085, 1630, 1640, 1660
PspPPI	RGGWCCY	2 cut(s)	1085, 1660
PspXI	VCTCGAGB	1 cut(s)	1452
PstNI	CAGNNNCTG	1 cut(s)	1820
PsuI	RGATCY	4 cut(s)	176, 315, 756, 1842
PsyI	GACNNNGTC	1 cut(s)	1601
PvuI	CGATCG	1 cut(s)	99
PvuII	CAGCTG	2 cut(s)	1352, 1893
RsaI	GTAC	8 cut(s)	224, 551, 1102, 1319, 1483, 1883, 1967, 2014
RsaNI	GTAC	8 cut(s)	223, 550, 1101, 1318, 1482, 1882, 1966, 2013
RseI	CAYNNNNRTG	3 cut(s)	1388, 1911, 2083
SacI	GAGCTC	1 cut(s)	1930
SaqAI	TTAA	2 cut(s)	1997, 2067
SatI	GCNGC	8 cut(s)	491, 567, 688, 903, 1353, 1494, 1891, 1903
Sau96I	GGNCC	9 cut(s)	274, 359, 531, 556, 837, 1085, 1630, 1640, 1660
SduI	GDGCHC	8 cut(s)	381, 387, 446, 1236, 1535, 1580, 1788, 1930
SfaNI	GCATC	6 cut(s)	822, 1057, 1281, 1603, 1924, 1971
SfcI	CTRYAG	1 cut(s)	1707
SfoI	GGCGCC	2 cut(s)	78, 412
Sfr274I	CTCGAG	1 cut(s)	1452
SinI	GGWCC	5 cut(s)	274, 556, 837, 1085, 1660
SlaI	CTCGAG	1 cut(s)	1452
SmaI	CCCGGG	1 cut(s)	357
SmiMI	CAYNNNNRTG	3 cut(s)	1388, 1911, 2083
SmlI	CTYRAG	1 cut(s)	1452
SmoI	CTYRAG	1 cut(s)	1452
Sse9I	AATT	8 cut(s)	88, 212, 341, 1129, 1323, 1405, 1828, 1959
SseBI	AGGCCT	1 cut(s)	1742
SsiI	CCGC	9 cut(s)	258, 278, 331, 544, 564, 567, 1888, 1903, 1955
SspDI	GGCGCC	2 cut(s)	76, 410
SspMI	CTAG	4 cut(s)	776, 788, 1836, 1976
SstI	GAGCTC	1 cut(s)	1930
StuI	AGGCCT	1 cut(s)	1742
StyI	CCWWGG	4 cut(s)	856, 878, 1580, 1663
TaaI	ACNGT	3 cut(s)	118, 1153, 1798
TaiI	ACGT	4 cut(s)	158, 384, 423, 1007
TaqI	TCGA	5 cut(s)	99, 251, 831, 1413, 1453
TaqII	GACCGA	1 cut(s)	815
TasI	AATT	8 cut(s)	88, 212, 341, 1129, 1323, 1405, 1828, 1959
TatI	WGTACW	2 cut(s)	1317, 1965
TauI	GCSGC	2 cut(s)	569, 1905
TfiI	GAWTC	4 cut(s)	658, 1401, 1650, 1854
Tru1I	TTAA	2 cut(s)	1997, 2067
Tru9I	TTAA	2 cut(s)	1997, 2067
TscAI	CASTG	3 cut(s)	276, 1015, 1156
TseFI	GTSAC	3 cut(s)	124, 151, 1595
TseI	GCWGC	6 cut(s)	490, 687, 902, 1352, 1493, 1890
Tsp45I	GTSAC	3 cut(s)	124, 151, 1595
TspDTI	ATGAA	6 cut(s)	57, 636, 1148, 1406, 1453, 1454
TspGWI	ACGGA	2 cut(s)	289, 2063
TspMI	CCCGGG	1 cut(s)	355
TspRI	CASTG	3 cut(s)	276, 1015, 1156
Tth111I	GACNNNGTC	1 cut(s)	1601
Van91I	CCANNNNNTGG	5 cut(s)	292, 576, 644, 879, 1758
VneI	GTGCAC	1 cut(s)	1232
VpaK11BI	GGWCC	5 cut(s)	274, 556, 837, 1085, 1660
XapI	RAATTY	3 cut(s)	88, 341, 1828
XceI	RCATGY	3 cut(s)	475, 1810, 1991
XcmI	CCANNNNNNNNNTGG	2 cut(s)	514, 1755
XhoI	CTCGAG	1 cut(s)	1452
XmaI	CCCGGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	4 cut(s)	776, 788, 1836, 1976
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.