Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8201022.1

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Reverse (-)

22 .. 480

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8201022.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgttatcttccctttcctgggtctgctggatcttccctgcttcagttctagcccatcagctagggtcaggactgcatggtcttgggatcggtgctatcggtctcgattggtccagcatttcctcttaccttggaagcccacttgccagtccatggtttgctactgctaatgttgctgctggttttgcccttgtgatgtatgtcattactcctgtggcttattggctcaatgtgtataaagcaaaaaccttccccatattctcggatggattgttcacgtctaccggccaaagttacaacatttcagctataatagaccccaacttccggcttgacattgatgcatacgagcgagagggtcctctccatatcagtaccttttttgctatcacctatggtgtcaattttgcttgccttactgccactgttgttcatgttctcctcttcaatgggaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

152

Amino Acids

16.46

Weight (kDa)

5.99

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	38, 95
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	4 cut(s)	18, 19, 153, 327
AgsI	TTSAA	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	2 cut(s)	61, 308
AluI	AGCT	2 cut(s)	61, 308
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	38, 95
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	111, 359
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	111, 359
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	63, 260
BciT130I	CCWGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	50, 62
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	2 cut(s)	111, 359
BmgBI	CACGTC	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	111, 359
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	18, 130, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 19, 153, 327
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	18, 130, 152
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	4 cut(s)	18, 19, 153, 327
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	285, 328
BslI	CCNNNNNNNGG	4 cut(s)	18, 19, 153, 327
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	30, 87
Bsp19I	CCATGG	1 cut(s)	152
BspANI	GGCC	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	2 cut(s)	38, 95
BspTNI	GGTCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	18, 130, 152
BssMI	GATC	2 cut(s)	30, 87
BssT1I	CCWWGG	2 cut(s)	130, 152
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	412
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	2 cut(s)	33, 90
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	30, 87
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 185
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	111, 359
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	3 cut(s)	77, 153, 434
CviJI	RGCY	8 cut(s)	53, 61, 138, 218, 226, 288, 308, 331
CviKI_1	RGCY	8 cut(s)	53, 61, 138, 218, 226, 288, 308, 331
CviQI	GTAC	1 cut(s)	375
DpnI	GATC	2 cut(s)	32, 89
DpnII	GATC	2 cut(s)	30, 87
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	130, 152
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	111, 359
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	130, 152
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	130, 152
FaeI	CATG	3 cut(s)	80, 156, 437
FatI	CATG	3 cut(s)	76, 152, 433
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	50, 62
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	2 cut(s)	285, 328
Hin1II	CATG	3 cut(s)	80, 156, 437
HpaII	CCGG	2 cut(s)	285, 328
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	276, 282
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	69, 104
Hpy8I	GTNNAC	2 cut(s)	276, 282
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	76, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 185
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	80, 156, 437
Kzo9I	GATC	2 cut(s)	30, 87
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	50, 62
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	32, 89
MboI	GATC	2 cut(s)	30, 87
MboII	GAAGA	2 cut(s)	25, 436
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	1 cut(s)	403
MnlI	CCTC	5 cut(s)	133, 349, 372, 447, 452
Mph1103I	ATGCAT	1 cut(s)	346
MspI	CCGG	2 cut(s)	285, 328
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	173, 185
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	30, 87
NlaIII	CATG	3 cut(s)	80, 156, 437
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	2 cut(s)	111, 359
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	30, 87
Sau96I	GGNCC	2 cut(s)	111, 359
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	8 cut(s)	63, 132, 251, 281, 310, 380, 395, 458
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	2 cut(s)	111, 359
Sse9I	AATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	50, 62
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	130, 152
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	403
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	111, 359
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	2 cut(s)	50, 62
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.