Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Reverse (-)

59864582 .. 59867227

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0476300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTAGAGGTTCTAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGTTCTCAACCTTCTCAGTCAGTAGTGGATGATGGTATACTAGAGGCTGGTGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAGCCTCTAAGTGGTCCATTTCCGGGAGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCTATATGGTTTAATAAGGAACGTGATCCGTTGAAACTTCAGAACCATTCATATAAGCTCACACAATGGGTATTTGATGAACATGTTACTAACCATAAGTTTTGGAGTTACATTGATGGGTCTAGGTTAAGGCCATTAGTTAACTGTTCATATTTAATTGGTAATAGAGTTGTTGTGTCAGCCTTTTGTGAGAGGTGGCAGCCTGAGACGAATACATTTCACTTACCCTTTGGTGAAATGACAATTACATTGGATGATGTTTTTAACATTTTAGGTATTCCAATTCAGGGTGATTCCATATCTGTACCTGACGGTGTGCGGTTAGACAAAACTTATTATGCATCTTTACTGTCATCTACACTAGGAGTTACTATAGATGAGGCAAAGAATGAAATGAGTCGATATGGTGGAAATGGGGTAACACTAGAGTGGTTGAGATTAAGATTTCAGAGTGTTTCAGATGATAGTTCTCTTGAATTTATTGAGTTCGCAGCAAGAGGATTCTTGCTATATATATTAGGTTGCACACTTTTTGTGGACAAGACTGGGAATAGGATAAATGTGATTTACCTACATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

272

Amino Acids

30.56

Weight (kDa)

5.58

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	132 - 271	2.8e-25	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	1 cut(s)	556
AclWI	GGATC	2 cut(s)	191, 257
AcsI	RAATTY	2 cut(s)	56, 713
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	3 cut(s)	170, 182, 524
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	211, 271, 713
AleI	CACNNNNGTG	1 cut(s)	664
AluBI	AGCT	4 cut(s)	134, 216, 236, 295
AluI	AGCT	4 cut(s)	134, 216, 236, 295
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	191, 257
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	4 cut(s)	233, 236, 436, 728
ApoI	RAATTY	2 cut(s)	56, 713
AspS9I	GGNCC	2 cut(s)	173, 188
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	482, 539
AvaII	GGWCC	2 cut(s)	173, 188
BbvI	GCAGC	4 cut(s)	223, 245, 448, 740
BccI	CCATC	3 cut(s)	86, 208, 347
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	5 cut(s)	6, 101, 360, 599, 662
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	4 cut(s)	234, 237, 437, 729
BlsI	GCNGC	4 cut(s)	235, 238, 438, 730
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	173, 188
BmgT120I	GGNCC	2 cut(s)	173, 188
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	2 cut(s)	129, 792
BmsI	GCATC	2 cut(s)	142, 587
BmuI	ACTGGG	2 cut(s)	129, 792
BpuMI	CCSGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 182, 524
Bse1I	ACTGG	2 cut(s)	124, 787
BseGI	GGATG	2 cut(s)	94, 496
BseLI	CCNNNNNNNGG	3 cut(s)	170, 182, 524
BseMII	CTCAG	2 cut(s)	89, 432
BseNI	ACTGG	2 cut(s)	124, 787
BseXI	GCAGC	4 cut(s)	223, 245, 448, 740
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	170, 182, 524
BsmAI	GTCTC	1 cut(s)	437
BsmBI	CGTCTC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	196, 262
BspACI	CCGC	1 cut(s)	556
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	2 cut(s)	88, 433
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	191, 257
BspQI	GCTCTTC	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	124, 787
BssMI	GATC	2 cut(s)	196, 262
BssNAI	GTATAC	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	98
Bst4CI	ACNGT	3 cut(s)	383, 551, 588
Bst6I	CTCTTC	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	75, 167, 441
BstF5I	GGATG	2 cut(s)	94, 496
BstKTI	GATC	2 cut(s)	199, 265
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	196, 262
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	4 cut(s)	223, 245, 448, 740
BstZ17I	GTATAC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	94, 496
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	173, 188
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	3 cut(s)	194, 227, 320
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	3 cut(s)	75, 167, 441
DpnI	GATC	2 cut(s)	198, 264
DpnII	GATC	2 cut(s)	196, 262
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	173, 188
Eco57I	CTGAAG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	3 cut(s)	197, 230, 323
FatI	CATG	3 cut(s)	193, 226, 319
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	234, 237, 437, 729
FokI	GGATG	2 cut(s)	101, 503
Fsp4HI	GCNGC	4 cut(s)	234, 237, 437, 729
FspBI	CTAG	5 cut(s)	6, 101, 360, 599, 662
GluI	GCNGC	4 cut(s)	234, 237, 437, 729
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	3 cut(s)	197, 230, 323
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	530, 634, 738
HpaI	GTTAAC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	2 cut(s)	482, 539
Hpy166II	GTNNAC	3 cut(s)	98, 379, 775
Hpy188I	TCNGA	4 cut(s)	139, 279, 687, 697
Hpy188III	TCNNGA	2 cut(s)	194, 710
Hpy8I	GTNNAC	3 cut(s)	98, 379, 775
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	3 cut(s)	383, 551, 588
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	155, 578, 762
HpyF3I	CTNAG	3 cut(s)	75, 167, 441
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	197, 230, 323
KspAI	GTTAAC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	196, 262
LguI	GCTCTTC	1 cut(s)	206
LpnPI	CCDG	7 cut(s)	93, 105, 195, 453, 509, 558, 768
Lsp1109I	GCAGC	4 cut(s)	223, 245, 448, 740
LweI	GCATC	2 cut(s)	142, 587
MaeI	CTAG	5 cut(s)	6, 101, 360, 599, 662
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	4 cut(s)	322, 344, 604, 655
MalI	GATC	2 cut(s)	198, 264
MboI	GATC	2 cut(s)	196, 262
MboII	GAAGA	2 cut(s)	137, 223
MluCI	AATT	5 cut(s)	56, 393, 480, 519, 713
MlyI	GAGTC	1 cut(s)	643
MnlI	CCTC	8 cut(s)	49, 97, 174, 179, 201, 423, 610, 728
Mph1103I	ATGCAT	1 cut(s)	580
MseI	TTAA	8 cut(s)	219, 249, 365, 378, 392, 501, 677, 817
MslI	CAYNNNNRTG	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	196, 262
NlaIII	CATG	3 cut(s)	197, 230, 323
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	664
PagI	TCATGA	1 cut(s)	193
PciI	ACATGT	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	530, 738
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	235, 238, 438, 730
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PpuMI	RGGWCCY	1 cut(s)	188
PscI	ACATGT	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	173, 188
PspPPI	RGGWCCY	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	664
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	8 cut(s)	219, 249, 365, 378, 392, 501, 677, 817
SatI	GCNGC	4 cut(s)	234, 237, 437, 729
Sau3AI	GATC	2 cut(s)	196, 262
Sau96I	GGNCC	2 cut(s)	173, 188
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	1 cut(s)	183
SfaNI	GCATC	2 cut(s)	142, 587
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	2 cut(s)	173, 188
SmiMI	CAYNNNNRTG	1 cut(s)	664
Sse9I	AATT	5 cut(s)	56, 393, 480, 519, 713
SsiI	CCGC	1 cut(s)	556
SspMI	CTAG	5 cut(s)	6, 101, 360, 599, 662
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	383, 551, 588
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	637
TasI	AATT	5 cut(s)	56, 393, 480, 519, 713
TfiI	GAWTC	2 cut(s)	530, 738
Tru1I	TTAA	8 cut(s)	219, 249, 365, 378, 392, 501, 677, 817
Tru9I	TTAA	8 cut(s)	219, 249, 365, 378, 392, 501, 677, 817
TseI	GCWGC	4 cut(s)	233, 236, 436, 728
TspDTI	ATGAA	4 cut(s)	276, 330, 375, 642
TspGWI	ACGGA	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	173, 188
XapI	RAATTY	2 cut(s)	56, 713
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	5 cut(s)	6, 101, 360, 599, 662
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.