Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8448977.1

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1680

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8448977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ctcctatctcggaagcccacttgcaagcccatggtttgccactgccaatgttgctgctggttttgtgcttgttgtgtatgtgttgactcccatatgttactggcttaacgtctacaaagccaaaaccttcccactattttcagacgaactcttcacagcagatggtcaagaatacaacatcacagaaatcatagactccaatttccatcttaatcttacggcgtatgaggaagaaggtccactttacattagcacatttttcgcagtgacttatggtgttggctttgctgcactcactgctacaatcgttcatgttgcactcttccatggaagggaaatatgggagcaaagcaaagcaagtttcaaggagaagaaaatggacatacacacaagacttatgcagaggtacaaccaagtgcctgagtggtggtttgtggtcattcttctgattaacattgcactcaccattttcacatgcgagtattacaatgatcaacttcaattgccttggtggggtgtccttctagcctgtgctattgccattttcttcaccctcccaatcggtatcatcacagccatcacaaatcagacaccaggcttgaatatcattactgagtacataataggttacatctacccaggatatccagttgccaatatgtgcttcaaagtctatggctacataagtatgactcaagccattacatttttgcaagactttaagcttggtcactacatgaaaatccctcctagaactatgttcatggcacaggttgttggaacccttatagccgggcttgtctacttgagcacggcatggtggctaatggagaccatccccggcatatgtaccgacacaacatcagtttggacttgccctatggacactgtgttttacgatgcgtctgtcatatggggtctgatcggtacacgaagaatattcggggacttgggcacatatgcagcagtgaactggttcttcctaggtggtgcaattgctccagttctagtttggttagctgccaaggcatttccacaacaggagtggattcgactcatcaacatgccggttttaatcggcgcaacgggtgatatgccaccggctactgcggttaactacacttcttggatcattttgggttttctctccggttttgttgcgtacaggtatagaccagattggtggaggagacacaactatcttctttctggggcacttgatgctggtcttgcctttatgggggtactgttgtattttgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

420

Amino Acids

47.49

Weight (kDa)

5.51

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	112, 802
AciI	CCGC	1 cut(s)	1110
AclWI	GGATC	1 cut(s)	1137
AfaI	GTAC	6 cut(s)	408, 618, 851, 929, 1164, 1246
AfiI	CCNNNNNNNGG	3 cut(s)	332, 513, 1240
AgsI	TTSAA	4 cut(s)	365, 501, 602, 668
AjnI	CCWGG	2 cut(s)	593, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	2 cut(s)	725, 1020
AluI	AGCT	2 cut(s)	725, 1020
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	2 cut(s)	825, 1184
AlwI	GGATC	1 cut(s)	1137
ApeKI	GCWGC	4 cut(s)	54, 288, 963, 1020
Asp700I	GAANNNNTTC	1 cut(s)	975
AspA2I	CCTAGG	1 cut(s)	983
AspLEI	GCGC	1 cut(s)	1083
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	794, 841
AsuHPI	GGTGA	3 cut(s)	455, 542, 1101
AvaII	GGWCC	1 cut(s)	237
AvrII	CCTAGG	1 cut(s)	983
BaeGI	GKGCMC	2 cut(s)	957, 1217
BaeI	ACNNNNGTAYC	1 cut(s)	1236
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	4 cut(s)	41, 275, 975, 1007
BccI	CCATC	4 cut(s)	156, 214, 585, 843
BceAI	ACGGC	2 cut(s)	235, 829
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	595, 640
BclI	TGATCA	1 cut(s)	491
BcnI	CCSGG	2 cut(s)	794, 841
BcoDI	GTCTC	2 cut(s)	825, 1184
BfaI	CTAG	4 cut(s)	525, 751, 984, 1008
BisI	GCNGC	4 cut(s)	55, 289, 964, 1021
BlnI	CCTAGG	1 cut(s)	983
BlsI	GCNGC	4 cut(s)	56, 290, 965, 1022
Bme1390I	CCNGG	4 cut(s)	595, 640, 794, 841
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	4 cut(s)	595, 640, 794, 841
BmsI	GCATC	2 cut(s)	890, 1211
BpmI	CTGGAG	1 cut(s)	985
BpuEI	CTTGAG	2 cut(s)	679, 827
BpuMI	CCSGG	2 cut(s)	794, 841
BsaI	GGTCTC	1 cut(s)	825
BsaJI	CCNNGG	7 cut(s)	30, 326, 507, 638, 839, 983, 1024
BsaWI	WCCGGW	1 cut(s)	1149
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 513, 1240
Bse118I	RCCGGY	2 cut(s)	1067, 1100
Bse1I	ACTGG	4 cut(s)	105, 648, 978, 1002
Bse3DI	GCAATG	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	595, 640
BseDI	CCNNGG	7 cut(s)	30, 326, 507, 638, 839, 983, 1024
BseGI	GGATG	1 cut(s)	835
BseLI	CCNNNNNNNGG	3 cut(s)	332, 513, 1240
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	412, 604
BseNI	ACTGG	4 cut(s)	105, 648, 978, 1002
BseRI	GAGGAG	1 cut(s)	1202
BseSI	GKGCMC	2 cut(s)	957, 1217
BseXI	GCAGC	4 cut(s)	41, 275, 975, 1007
BsgI	GTGCAG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	5 cut(s)	793, 841, 1068, 1101, 1150
BslFI	GGGAC	1 cut(s)	960
BslI	CCNNNNNNNGG	3 cut(s)	332, 513, 1240
BsmAI	GTCTC	2 cut(s)	825, 1184
BsmFI	GGGAC	1 cut(s)	960
Bso31I	GGTCTC	1 cut(s)	825
Bsp1286I	GDGCHC	3 cut(s)	813, 957, 1217
Bsp143I	GATC	3 cut(s)	491, 922, 1129
Bsp19I	CCATGG	2 cut(s)	30, 326
BspACI	CCGC	1 cut(s)	1110
BspCNI	CTCAG	2 cut(s)	413, 605
BspLI	GGNNCC	1 cut(s)	782
BspPI	GGATC	1 cut(s)	1137
BspTNI	GGTCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	2 cut(s)	1067, 1100
BsrI	ACTGG	4 cut(s)	105, 648, 978, 1002
BssAI	RCCGGY	2 cut(s)	1067, 1100
BssECI	CCNNGG	7 cut(s)	30, 326, 507, 638, 839, 983, 1024
BssMI	GATC	3 cut(s)	491, 922, 1129
BssT1I	CCWWGG	5 cut(s)	30, 326, 507, 983, 1024
Bst2UI	CCWGG	2 cut(s)	595, 640
Bst4CI	ACNGT	2 cut(s)	890, 1249
Bst6I	CTCTTC	2 cut(s)	156, 327
BstAPI	GCANNNNNTGC	2 cut(s)	297, 1221
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	421, 613
BstDSI	CCRYGG	2 cut(s)	30, 326
BstF5I	GGATG	1 cut(s)	835
BstHHI	GCGC	1 cut(s)	1083
BstKTI	GATC	3 cut(s)	494, 925, 1132
BstMAI	GTCTC	2 cut(s)	825, 1184
BstMBI	GATC	3 cut(s)	491, 922, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 297, 1026, 1221, 1230
BstNI	CCWGG	2 cut(s)	595, 640
BstNSI	RCATGY	2 cut(s)	478, 1067
BstSCI	CCNGG	4 cut(s)	593, 638, 792, 839
BstSLI	GKGCMC	2 cut(s)	957, 1217
BstV1I	GCAGC	4 cut(s)	41, 275, 975, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	1183
BtgI	CCRYGG	2 cut(s)	30, 326
BtsCI	GGATG	1 cut(s)	835
BtsI	GCAGTG	4 cut(s)	40, 271, 295, 973
BtsIMutI	CAGTG	5 cut(s)	40, 271, 295, 886, 973
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	1083
Cfr10I	RCCGGY	2 cut(s)	1067, 1100
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	892
Csp6I	GTAC	6 cut(s)	407, 617, 850, 928, 1163, 1245
CspCI	CAANNNNNGTGG	2 cut(s)	1026, 1061
CviAII	CATG	8 cut(s)	31, 312, 327, 475, 737, 764, 817, 1064
CviQI	GTAC	6 cut(s)	407, 617, 850, 928, 1163, 1245
DdeI	CTNAG	2 cut(s)	421, 613
DpnI	GATC	3 cut(s)	493, 924, 1131
DpnII	GATC	3 cut(s)	491, 922, 1129
Eam1104I	CTCTTC	2 cut(s)	156, 327
EarI	CTCTTC	2 cut(s)	156, 327
Eco130I	CCWWGG	5 cut(s)	30, 326, 507, 983, 1024
Eco31I	GGTCTC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	593, 638
EcoRV	GATATC	1 cut(s)	645
EcoT14I	CCWWGG	5 cut(s)	30, 326, 507, 983, 1024
ErhI	CCWWGG	5 cut(s)	30, 326, 507, 983, 1024
FaeI	CATG	8 cut(s)	34, 315, 330, 478, 740, 767, 820, 1067
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	8 cut(s)	30, 311, 326, 474, 736, 763, 816, 1063
FauNDI	CATATG	4 cut(s)	93, 846, 912, 959
FbaI	TGATCA	1 cut(s)	491
FblI	GTMKAC	2 cut(s)	112, 802
Fnu4HI	GCNGC	4 cut(s)	55, 289, 964, 1021
FokI	GGATG	1 cut(s)	822
Fsp4HI	GCNGC	4 cut(s)	55, 289, 964, 1021
FspBI	CTAG	4 cut(s)	525, 751, 984, 1008
GlaI	GCGC	1 cut(s)	1082
GluI	GCNGC	4 cut(s)	55, 289, 964, 1021
GsuI	CTGGAG	1 cut(s)	985
HapII	CCGG	5 cut(s)	793, 841, 1068, 1101, 1150
HgaI	GACGC	1 cut(s)	892
HhaI	GCGC	1 cut(s)	1083
Hin1II	CATG	8 cut(s)	34, 315, 330, 478, 740, 767, 820, 1067
Hin6I	GCGC	1 cut(s)	1081
HinP1I	GCGC	1 cut(s)	1081
HincII	GTYRAC	2 cut(s)	85, 1115
HindII	GTYRAC	2 cut(s)	85, 1115
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	5 cut(s)	86, 195, 692, 1049, 1054
HpaI	GTTAAC	1 cut(s)	1115
HpaII	CCGG	5 cut(s)	793, 841, 1068, 1101, 1150
HphI	GGTGA	3 cut(s)	455, 542, 1101
Hpy166II	GTNNAC	7 cut(s)	85, 113, 240, 803, 930, 971, 1115
Hpy188I	TCNGA	5 cut(s)	12, 143, 448, 589, 922
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	7 cut(s)	85, 113, 240, 803, 930, 971, 1115
HpyAV	CCTTC	4 cut(s)	137, 228, 325, 531
HpyCH4III	ACNGT	2 cut(s)	890, 1249
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	8 cut(s)	24, 291, 318, 401, 459, 713, 963, 993
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 297, 1026, 1221, 1230
HpyF3I	CTNAG	2 cut(s)	421, 613
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	8 cut(s)	34, 315, 330, 478, 740, 767, 820, 1067
HspAI	GCGC	1 cut(s)	1081
Ksp22I	TGATCA	1 cut(s)	491
KspAI	GTTAAC	1 cut(s)	1115
Kzo9I	GATC	3 cut(s)	491, 922, 1129
LmnI	GCTCC	2 cut(s)	344, 1004
Lsp1109I	GCAGC	4 cut(s)	41, 275, 975, 1007
LweI	GCATC	2 cut(s)	890, 1211
MaeI	CTAG	4 cut(s)	525, 751, 984, 1008
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	4 cut(s)	96, 266, 627, 729
MalI	GATC	3 cut(s)	493, 924, 1131
MboI	GATC	3 cut(s)	491, 922, 1129
MboII	GAAGA	9 cut(s)	143, 243, 314, 383, 435, 539, 946, 971, 1194
MfeI	CAATTG	2 cut(s)	501, 994
MhlI	GDGCHC	3 cut(s)	813, 957, 1217
MluCI	AATT	3 cut(s)	200, 501, 994
MlyI	GAGTC	4 cut(s)	80, 189, 686, 1048
MmeI	TCCRAC	1 cut(s)	758
MnlI	CCTC	5 cut(s)	221, 397, 564, 757, 1180
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	6 cut(s)	106, 211, 451, 721, 1074, 1114
MslI	CAYNNNNRTG	2 cut(s)	687, 1062
MspI	CCGG	5 cut(s)	793, 841, 1068, 1101, 1150
MspR9I	CCNGG	4 cut(s)	595, 640, 794, 841
MunI	CAATTG	2 cut(s)	501, 994
MvaI	CCWGG	2 cut(s)	595, 640
MwoI	GCNNNNNNNGC	5 cut(s)	51, 297, 1026, 1221, 1230
NciI	CCSGG	2 cut(s)	794, 841
NcoI	CCATGG	2 cut(s)	30, 326
NdeI	CATATG	4 cut(s)	93, 846, 912, 959
NdeII	GATC	3 cut(s)	491, 922, 1129
NlaIII	CATG	8 cut(s)	34, 315, 330, 478, 740, 767, 820, 1067
NlaIV	GGNNCC	1 cut(s)	782
NmuCI	GTSAC	2 cut(s)	266, 729
NspI	RCATGY	2 cut(s)	478, 1067
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	1 cut(s)	1049
PkrI	GCNGC	4 cut(s)	56, 290, 965, 1022
PleI	GAGTC	4 cut(s)	80, 189, 686, 1048
PpsI	GAGTC	4 cut(s)	80, 189, 686, 1048
Psp6I	CCWGG	2 cut(s)	593, 638
PspGI	CCWGG	2 cut(s)	593, 638
PspN4I	GGNNCC	1 cut(s)	782
PspPI	GGNCC	1 cut(s)	237
RsaI	GTAC	6 cut(s)	408, 618, 851, 929, 1164, 1246
RsaNI	GTAC	6 cut(s)	407, 617, 850, 928, 1163, 1245
RseI	CAYNNNNRTG	2 cut(s)	687, 1062
SaqAI	TTAA	6 cut(s)	106, 211, 451, 721, 1074, 1114
SatI	GCNGC	4 cut(s)	55, 289, 964, 1021
Sau3AI	GATC	3 cut(s)	491, 922, 1129
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	4 cut(s)	80, 189, 686, 1048
ScrFI	CCNGG	4 cut(s)	595, 640, 794, 841
SduI	GDGCHC	3 cut(s)	813, 957, 1217
SfaNI	GCATC	2 cut(s)	890, 1211
SinI	GGWCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	687, 1062
SmlI	CTYRAG	2 cut(s)	694, 806
SmoI	CTYRAG	2 cut(s)	694, 806
Sse9I	AATT	3 cut(s)	200, 501, 994
SsiI	CCGC	1 cut(s)	1110
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	4 cut(s)	525, 751, 984, 1008
StyD4I	CCNGG	4 cut(s)	593, 638, 792, 839
StyI	CCWWGG	5 cut(s)	30, 326, 507, 983, 1024
TaaI	ACNGT	2 cut(s)	890, 1249
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	1052
TasI	AATT	3 cut(s)	200, 501, 994
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	1 cut(s)	1049
Tru1I	TTAA	6 cut(s)	106, 211, 451, 721, 1074, 1114
Tru9I	TTAA	6 cut(s)	106, 211, 451, 721, 1074, 1114
TscAI	CASTG	5 cut(s)	47, 271, 302, 893, 973
TseFI	GTSAC	2 cut(s)	266, 729
TseI	GCWGC	4 cut(s)	54, 288, 963, 1020
Tsp45I	GTSAC	2 cut(s)	266, 729
TspDTI	ATGAA	3 cut(s)	300, 752, 753
TspRI	CASTG	5 cut(s)	47, 271, 302, 893, 973
VpaK11BI	GGWCC	1 cut(s)	237
XceI	RCATGY	2 cut(s)	478, 1067
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1009, 1042
XmaJI	CCTAGG	1 cut(s)	983
XmiI	GTMKAC	2 cut(s)	112, 802
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	4 cut(s)	525, 751, 984, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.