Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Forward (+)

6386815 .. 6390316

Gene Structure 3502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11690.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGACTATCGGACCCGAAATCACCGCTCCTCTCCTTCACAACAAGAACCATGCTTCCGTTTCATCTCCGTCACCGGAAAATTTCTCCGGCGAGGAGAATTCCCCGATCGAGCAAGTCGCCCTCACCGTCCCCATCACCGACGACCCCTCCCTCCCGGCCGTCACGTTCCGCACATGGACGCTCGGATCCCTCGCGTGTATCCTACTCTCCTTCCTCAACCAATTCTTCTGGTACCGGCGAGAGCCTCTCTCCCTAACCTCGATCTCCGCCCAGATCGCGGTGGTCCCGCTCGGCCACCTCATGGCCTCCGTCGTCACCGACCGGGTCTTCTTCAAGGGGCGGAGATGGGAGTTCACGCTCAACCCGGGGCCTTTCAACGTCAAGGAGCACGTGCTCATCACCATCTTCGCCAACTCCGGCGCCGGCAACGTCTACGCGATCCACATAGTCAGCACCATCAAGGTGTTTTACGGGAAGGACATGTCGTTTTGGGTGGCGCTGCTCGTCGTTTTGACCACTCAGGTGTTGGGCTTCGGTTGGGCTGGGCTTTTCCGGCGGTACTTGGTTGAGCCCGCCGCCATGTGGTGGCCTCACAATCTCGTCCAGGTTTCTCTCTTCAGAGCATTACATGAGAAGGAGGAGAGGCCTAGAGGTGGATTAACAAGGAATCAGTTCTTCCTAATTGCTTTCACTTGTAGCTTTGCTTATTATGTTTTTCCGGGCTACTTGTTCCCAATGTTGTCCTCCATTTCCTGGGTCTGCTGGATCTTTCCTGCTTCTGTTCTAGTCCATCAGCTAGGCTCAGGACTACATGGTCTTGGGATCGGTGCTATTGGTCTCGATTGGTCCAGCATTTCCTCTTACCTTGGAAGTCCACTTGCCAGTCCATGGTTTGCTACTGCTAATGTTGCTGTTGGTTTTGTCCTTGTGATGTATGTCATTACTCCTGTGGCTTATTGGCTCAATGTGTATAAAGCAAGAACCTTCCCCATATTCTCAGATGGATTGTTCACGTCTACTGGCCAAAGCTACAACATTTCAGCTATAATAGACCCCAACTTCCGGCTTGACATTGATGCGTATGAGCGAGAGGGCCCTCTCCATATCAGCACCTTTTTTGCTATCAACTATGGTGTGAATTTTGCTTGCCTCACTGCCACTGTTGTTCATGTTCTCCTCTTCAATGGGAGAGATATCTGGGAGCTAAGCAAGTCTGCCTTCCAGGAAAAGAAGGCAGATGTGCACACAAATCTCATGAGAAGATACAAGCAAGTTCCTGGATGGTGGTTCATATGTATCCTTGTGGCTAACATAGCAGCAACTATGTTTACATGCCATTACTACAACGATCAATTGCAATTGCAATGGTGGGGAGTCTTGCTTGCTTGTGGTCTAGCTTTGTTCTTCACTCTACCTGTCGGAGTCATTTATGCCACAACAAATCAGATGCCGGCATTGAATGTGATCACAGAATACATAATTGGGTATCTGTATCCTGGATATCCAGCTGCTAACATATTATTCAAAGTATATGGACACATAAGCATGAAACAAGGAATCACTTTTCTGGAAGACTTCAAGCTTGGACACTATATGAAGATTGCTCCTCGAGCAATGTTCATGGCACAGATAGCTGGTACTATTATAGCAGCACTTGTGCATTTAGGAACGGCATGGTGGCTTATGAGCACAATCCCCGATATATGCGACAGGGCGTTACTACCAGCAGATAGCCCATGGACTTGCCCCGGTGACCATGTCTTCTATGATGCTTCTGTCATTTGGGGCCTTGTTGGGCCGCGCAGAATCTTTGGGGATCTTGGCTACTATTCGGCTATCAACTGGTTCTTCTTGGCTGGGGCTATAGCTCCTGCACTTGTTTGGCTTGCACACAAGGCCTTCCCAACCAAACAATGGATTAGACTTATAACCATGCCTGTGCTCTTAGGGACAGTAGTCAACATGCCTCCAGCTACTGCTGTGAATTTCACCAGTTGGATCCTCATTGGATTTGCCTCAGGCTTTGTGGCTTACAGGTACTACCGCAGCTGGTGGAGTCGCCACAACTACGTGCTATCTGGTGCCCTTGACGCTGGATTAGCCTTCATGGCAGTAATCTTGTACTTATGTCTAGGGATGCATCATGTCCACTTAAAATGGTGGGGAAGTTCCCCGGATGGTTGTCCGTTGGCTTCTTGCCCAACAGAACCTGGTGTTCTGATCAAGGGCTGTCCATTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

748

Amino Acids

83.45

Weight (kDa)

8.43

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	24 - 403	1.5e-93	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1928
AasI	GACNNNNNNGTC	1 cut(s)	813
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	3 cut(s)	231, 419, 2081
AccB7I	CCANNNNNTGG	5 cut(s)	301, 585, 753, 888, 1914
AccBSI	CCGCTC	2 cut(s)	26, 289
AccI	GTMKAC	2 cut(s)	432, 1016
AccII	CGCG	4 cut(s)	194, 278, 437, 1801
AclWI	GGATC	8 cut(s)	180, 193, 433, 773, 830, 1824, 1993, 2006
AcoI	YGGCCR	3 cut(s)	156, 292, 1021
AcsI	RAATTY	4 cut(s)	79, 97, 1138, 1984
AcuI	CTGAAG	1 cut(s)	601
AcvI	CACGTG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	5 cut(s)	233, 560, 1639, 2039, 2123
AfiI	CCNNNNNNNGG	9 cut(s)	277, 301, 582, 585, 653, 753, 888, 1062, 1914
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	6 cut(s)	334, 376, 1183, 1459, 1525, 1579
AjiI	CACGTC	1 cut(s)	1014
AjnI	CCWGG	6 cut(s)	603, 752, 1221, 1276, 1495, 2209
AjuI	GAANNNNNNNTTGG	2 cut(s)	1464, 1496
AleI	CACNNNNGTG	1 cut(s)	521
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
Alw21I	GWGCWC	5 cut(s)	390, 396, 1245, 1691, 1944
Alw26I	GTCTC	1 cut(s)	842
Alw44I	GTGCAC	1 cut(s)	1241
AlwI	GGATC	8 cut(s)	180, 193, 433, 773, 830, 1824, 1993, 2006
AlwNI	CAGNNNCTG	2 cut(s)	1976, 2210
Ama87I	CYCGRG	2 cut(s)	364, 1608
ApaI	GGGCCC	1 cut(s)	1097
ApaLI	GTGCAC	1 cut(s)	1241
ApeKI	GCWGC	5 cut(s)	499, 1316, 1508, 1649, 2046
ApoI	RAATTY	4 cut(s)	79, 97, 1138, 1984
Asp700I	GAANNNNTTC	1 cut(s)	671
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	3 cut(s)	422, 499, 1803
AspS9I	GGNCC	8 cut(s)	11, 283, 368, 846, 1093, 1094, 1786, 1796
AsuC2I	CCSGG	7 cut(s)	155, 323, 365, 366, 720, 1749, 2174
AsuHPI	GGTGA	8 cut(s)	13, 63, 115, 127, 307, 391, 1763, 1981
AvaI	CYCGRG	2 cut(s)	364, 1608
AvaII	GGWCC	3 cut(s)	11, 283, 846
AxyI	CCTNAGG	1 cut(s)	2017
BaeGI	GKGCMC	3 cut(s)	1097, 1245, 2086
BalI	TGGCCA	1 cut(s)	1023
BamHI	GGATCC	2 cut(s)	185, 1998
BanI	GGYRCC	3 cut(s)	231, 419, 2081
BanII	GRGCYC	2 cut(s)	573, 1097
BbrPI	CACGTG	1 cut(s)	391
BbsI	GAAGAC	3 cut(s)	319, 1578, 1753
Bbv12I	GWGCWC	5 cut(s)	390, 396, 1245, 1691, 1944
BbvI	GCAGC	5 cut(s)	486, 1328, 1495, 1661, 2058
BccI	CCATC	8 cut(s)	140, 339, 410, 464, 798, 995, 1275, 2171
BceAI	ACGGC	2 cut(s)	143, 1686
BciT130I	CCWGG	6 cut(s)	605, 754, 1223, 1278, 1497, 2211
BciVI	GTATCC	3 cut(s)	209, 1307, 1503
BclI	TGATCA	2 cut(s)	1464, 2220
BcnI	CCSGG	7 cut(s)	155, 323, 365, 366, 720, 1749, 2174
BcoDI	GTCTC	1 cut(s)	842
BfaI	CTAG	5 cut(s)	648, 785, 797, 1394, 2132
BfmI	CTRYAG	1 cut(s)	1863
BfoI	RGCGCY	2 cut(s)	423, 500
BfuI	GTATCC	3 cut(s)	209, 1307, 1503
BglI	GCCNNNNNGGC	1 cut(s)	2108
BisI	GCNGC	7 cut(s)	500, 576, 1317, 1509, 1650, 1799, 2047
BlpI	GCTNAGC	1 cut(s)	1205
BlsI	GCNGC	7 cut(s)	501, 577, 1318, 1510, 1651, 1800, 2048
Bme18I	GGWCC	3 cut(s)	11, 283, 846
BmeT110I	CYCGRG	2 cut(s)	364, 1608
BmgBI	CACGTC	1 cut(s)	1014
BmgT120I	GGNCC	8 cut(s)	11, 283, 368, 846, 1093, 1094, 1786, 1796
BmsI	GCATC	5 cut(s)	1066, 1437, 1759, 2127, 2149
BoxI	GACNNNNGTC	1 cut(s)	1955
BpiI	GAAGAC	3 cut(s)	319, 1578, 1753
BplI	GAGNNNNNCTC	4 cut(s)	231, 263, 233, 265
BpmI	CTGGAG	1 cut(s)	1953
Bpu10I	CCTNAGC	1 cut(s)	802
Bpu1102I	GCTNAGC	1 cut(s)	1205
BpuMI	CCSGG	7 cut(s)	155, 323, 365, 366, 720, 1749, 2174
BsaAI	YACGTR	2 cut(s)	391, 2071
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	8 cut(s)	364, 365, 753, 865, 887, 1736, 1747, 2172
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	9 cut(s)	277, 301, 582, 585, 653, 753, 888, 1062, 1914
Bse118I	RCCGGY	3 cut(s)	234, 422, 1450
Bse1I	ACTGG	4 cut(s)	882, 1024, 1847, 1992
Bse21I	CCTNAGG	1 cut(s)	2017
Bse3DI	GCAATG	3 cut(s)	1370, 1620, 2234
BseBI	CCWGG	6 cut(s)	605, 754, 1223, 1278, 1497, 2211
BseDI	CCNNGG	8 cut(s)	364, 365, 753, 865, 887, 1736, 1747, 2172
BseGI	GGATG	3 cut(s)	1286, 2142, 2182
BseLI	CCNNNNNNNGG	9 cut(s)	277, 301, 582, 585, 653, 753, 888, 1062, 1914
BseMI	GCAATG	3 cut(s)	1370, 1620, 2234
BseMII	CTCAG	4 cut(s)	533, 816, 1011, 2031
BseNI	ACTGG	4 cut(s)	882, 1024, 1847, 1992
BseRI	GAGGAG	5 cut(s)	18, 107, 653, 1166, 1596
BseSI	GKGCMC	3 cut(s)	1097, 1245, 2086
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	5 cut(s)	486, 1328, 1495, 1661, 2058
BseYI	CCCAGC	2 cut(s)	542, 1856
BsgI	GTGCAG	1 cut(s)	1857
Bsh1236I	CGCG	4 cut(s)	194, 278, 437, 1801
Bsh1285I	CGRYCG	3 cut(s)	108, 159, 322
BshNI	GGYRCC	3 cut(s)	231, 419, 2081
BsiEI	CGRYCG	3 cut(s)	108, 159, 322
BsiHKAI	GWGCWC	5 cut(s)	390, 396, 1245, 1691, 1944
BsiHKCI	CYCGRG	2 cut(s)	364, 1608
BslFI	GGGAC	3 cut(s)	113, 269, 1963
BslI	CCNNNNNNNGG	9 cut(s)	277, 301, 582, 585, 653, 753, 888, 1062, 1914
BsmAI	GTCTC	1 cut(s)	842
BsmFI	GGGAC	3 cut(s)	113, 269, 1963
Bso31I	GGTCTC	1 cut(s)	842
BsoBI	CYCGRG	2 cut(s)	364, 1608
Bsp120I	GGGCCC	1 cut(s)	1093
Bsp1286I	GDGCHC	8 cut(s)	390, 396, 573, 1097, 1245, 1691, 1944, 2086
Bsp1720I	GCTNAGC	1 cut(s)	1205
Bsp19I	CCATGG	2 cut(s)	887, 1736
BspCNI	CTCAG	4 cut(s)	532, 815, 1010, 2030
BspFNI	CGCG	4 cut(s)	194, 278, 437, 1801
BspHI	TCATGA	1 cut(s)	1254
BspPI	GGATC	8 cut(s)	180, 193, 433, 773, 830, 1824, 1993, 2006
BspT107I	GGYRCC	3 cut(s)	231, 419, 2081
BspTNI	GGTCTC	1 cut(s)	842
BsrBI	CCGCTC	2 cut(s)	26, 289
BsrDI	GCAATG	3 cut(s)	1370, 1620, 2234
BsrFI	RCCGGY	3 cut(s)	234, 422, 1450
BsrI	ACTGG	4 cut(s)	882, 1024, 1847, 1992
BssAI	RCCGGY	3 cut(s)	234, 422, 1450
BssECI	CCNNGG	8 cut(s)	364, 365, 753, 865, 887, 1736, 1747, 2172
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	3 cut(s)	865, 887, 1736
Bst2UI	CCWGG	6 cut(s)	605, 754, 1223, 1278, 1497, 2211
Bst4CI	ACNGT	3 cut(s)	127, 1162, 1954
Bst6I	CTCTTC	2 cut(s)	620, 1184
BstACI	GRCGYC	1 cut(s)	420
BstBAI	YACGTR	2 cut(s)	391, 2071
BstC8I	GCNNGC	6 cut(s)	424, 573, 1147, 1383, 1452, 1887
BstDEI	CTNAG	6 cut(s)	519, 802, 997, 1205, 1945, 2017
BstDSI	CCRYGG	2 cut(s)	887, 1736
BstEII	GGTNACC	1 cut(s)	1751
BstF5I	GGATG	3 cut(s)	1286, 2142, 2182
BstFNI	CGCG	4 cut(s)	194, 278, 437, 1801
BstH2I	RGCGCY	2 cut(s)	423, 500
BstHHI	GCGC	3 cut(s)	422, 499, 1803
BstMAI	GTCTC	1 cut(s)	842
BstMCI	CGRYCG	3 cut(s)	108, 159, 322
BstNI	CCWGG	6 cut(s)	605, 754, 1223, 1278, 1497, 2211
BstNSI	RCATGY	3 cut(s)	484, 1335, 1966
BstPAI	GACNNNNGTC	1 cut(s)	1955
BstPI	GGTNACC	1 cut(s)	1751
BstSFI	CTRYAG	1 cut(s)	1863
BstSLI	GKGCMC	3 cut(s)	1097, 1245, 2086
BstUI	CGCG	4 cut(s)	194, 278, 437, 1801
BstV1I	GCAGC	5 cut(s)	486, 1328, 1495, 1661, 2058
BstV2I	GAAGAC	3 cut(s)	319, 1578, 1753
BstX2I	RGATCY	4 cut(s)	185, 765, 1816, 1998
BstYI	RGATCY	4 cut(s)	185, 765, 1816, 1998
BstZI	CGGCCG	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	2017
BsuI	GTATCC	3 cut(s)	209, 1307, 1503
BtgI	CCRYGG	2 cut(s)	887, 1736
BtrI	CACGTC	1 cut(s)	1014
BtsCI	GGATG	3 cut(s)	1286, 2142, 2182
BtsI	GCAGTG	1 cut(s)	1152
BtsIMutI	CAGTG	2 cut(s)	1152, 1158
Cac8I	GCNNGC	6 cut(s)	424, 573, 1147, 1383, 1452, 1887
CaiI	CAGNNNCTG	2 cut(s)	1976, 2210
CciI	TCATGA	1 cut(s)	1254
CfoI	GCGC	3 cut(s)	422, 499, 1803
Cfr10I	RCCGGY	3 cut(s)	234, 422, 1450
Cfr13I	GGNCC	8 cut(s)	11, 283, 368, 846, 1093, 1094, 1786, 1796
Cfr9I	CCCGGG	1 cut(s)	364
CseI	GACGC	2 cut(s)	187, 2099
CsiI	ACCWGGT	1 cut(s)	2209
Csp6I	GTAC	5 cut(s)	232, 559, 1638, 2038, 2122
CviQI	GTAC	5 cut(s)	232, 559, 1638, 2038, 2122
DdeI	CTNAG	6 cut(s)	519, 802, 997, 1205, 1945, 2017
DinI	GGCGCC	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	813
DseDI	GACNNNNNNGTC	1 cut(s)	813
EaeI	YGGCCR	3 cut(s)	156, 292, 1021
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	620, 1184
EarI	CTCTTC	2 cut(s)	620, 1184
EciI	GGCGGA	2 cut(s)	256, 355
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	3 cut(s)	865, 887, 1736
Eco147I	AGGCCT	2 cut(s)	646, 1898
Eco24I	GRGCYC	2 cut(s)	573, 1097
Eco31I	GGTCTC	1 cut(s)	842
Eco32I	GATATC	2 cut(s)	1195, 1502
Eco47I	GGWCC	3 cut(s)	11, 283, 846
Eco52I	CGGCCG	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	601
Eco72I	CACGTG	1 cut(s)	391
Eco81I	CCTNAGG	1 cut(s)	2017
Eco88I	CYCGRG	2 cut(s)	364, 1608
Eco91I	GGTNACC	1 cut(s)	1751
EcoO109I	RGGNCCY	4 cut(s)	368, 1093, 1094, 1786
EcoO65I	GGTNACC	1 cut(s)	1751
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	6 cut(s)	603, 752, 1221, 1276, 1495, 2209
EcoRV	GATATC	2 cut(s)	1195, 1502
EcoT14I	CCWWGG	3 cut(s)	865, 887, 1736
EcoT22I	ATGCAT	1 cut(s)	2142
EcoT38I	GRGCYC	2 cut(s)	573, 1097
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
ErhI	CCWWGG	3 cut(s)	865, 887, 1736
FalI	AAGNNNNNCTT	2 cut(s)	1202, 1234
FaqI	GGGAC	3 cut(s)	113, 269, 1963
FauI	CCCGC	2 cut(s)	294, 580
FauNDI	CATATG	1 cut(s)	1292
FbaI	TGATCA	2 cut(s)	1464, 2220
FblI	GTMKAC	2 cut(s)	432, 1016
Fnu4HI	GCNGC	7 cut(s)	500, 576, 1317, 1509, 1650, 1799, 2047
FokI	GGATG	3 cut(s)	1293, 2149, 2189
FriOI	GRGCYC	2 cut(s)	573, 1097
Fsp4HI	GCNGC	7 cut(s)	500, 576, 1317, 1509, 1650, 1799, 2047
FspBI	CTAG	5 cut(s)	648, 785, 797, 1394, 2132
GlaI	GCGC	3 cut(s)	421, 498, 1802
GluI	GCNGC	7 cut(s)	500, 576, 1317, 1509, 1650, 1799, 2047
GsaI	CCCAGC	2 cut(s)	546, 1860
GsuI	CTGGAG	1 cut(s)	1953
HaeII	RGCGCY	2 cut(s)	423, 500
HgaI	GACGC	2 cut(s)	187, 2099
HhaI	GCGC	3 cut(s)	422, 499, 1803
Hin1I	GRCGYC	1 cut(s)	420
Hin6I	GCGC	3 cut(s)	420, 497, 1801
HinP1I	GCGC	3 cut(s)	420, 497, 1801
HincII	GTYRAC	1 cut(s)	1960
HindII	GTYRAC	1 cut(s)	1960
HindIII	AAGCTT	1 cut(s)	1580
HinfI	GANTC	6 cut(s)	667, 1374, 1422, 1557, 1806, 2056
HphI	GGTGA	8 cut(s)	13, 63, 115, 127, 307, 391, 1763, 1981
Hpy166II	GTNNAC	9 cut(s)	354, 433, 875, 1011, 1017, 1243, 1329, 1960, 2149
Hpy188I	TCNGA	7 cut(s)	11, 185, 620, 1000, 1421, 1446, 2220
Hpy188III	TCNNGA	4 cut(s)	804, 839, 1255, 1568
Hpy8I	GTNNAC	9 cut(s)	354, 433, 875, 1011, 1017, 1243, 1329, 1960, 2149
Hpy99I	CGWCG	3 cut(s)	143, 314, 509
HpyAV	CCTTC	9 cut(s)	44, 220, 469, 628, 994, 1225, 1228, 1909, 2113
HpyCH4III	ACNGT	3 cut(s)	127, 1162, 1954
HpyCH4IV	ACGT	6 cut(s)	164, 378, 390, 429, 1013, 2070
HpyCH4V	TGCA	7 cut(s)	1243, 1357, 1363, 1660, 1874, 1889, 2140
HpyF3I	CTNAG	6 cut(s)	519, 802, 997, 1205, 1945, 2017
HpySE526I	ACGT	6 cut(s)	164, 378, 390, 429, 1013, 2070
Hsp92I	GRCGYC	1 cut(s)	420
HspAI	GCGC	3 cut(s)	420, 497, 1801
KasI	GGCGCC	1 cut(s)	419
KpnI	GGTACC	1 cut(s)	235
KroI	GCCGGC	2 cut(s)	422, 1450
KroNI	GCCGGC	2 cut(s)	424, 1452
Ksp22I	TGATCA	2 cut(s)	1464, 2220
LmnI	GCTCC	5 cut(s)	31, 385, 1201, 1609, 1873
Lsp1109I	GCAGC	5 cut(s)	486, 1328, 1495, 1661, 2058
LweI	GCATC	5 cut(s)	1066, 1437, 1759, 2127, 2149
MabI	ACCWGGT	1 cut(s)	2209
MaeI	CTAG	5 cut(s)	648, 785, 797, 1394, 2132
MaeII	ACGT	6 cut(s)	164, 378, 390, 429, 1013, 2070
MaeIII	GTNAC	5 cut(s)	69, 160, 313, 1716, 1751
MbiI	CCGCTC	2 cut(s)	26, 289
MfeI	CAATTG	2 cut(s)	1352, 1358
MflI	RGATCY	4 cut(s)	185, 765, 1816, 1998
MhlI	GDGCHC	8 cut(s)	390, 396, 573, 1097, 1245, 1691, 1944, 2086
MlsI	TGGCCA	1 cut(s)	1023
MluCI	AATT	9 cut(s)	79, 97, 221, 681, 1138, 1352, 1358, 1479, 1984
MluNI	TGGCCA	1 cut(s)	1023
Mly113I	GGCGCC	1 cut(s)	420
MlyI	GAGTC	3 cut(s)	1383, 1431, 2065
MmeI	TCCRAC	2 cut(s)	1399, 1976
Mox20I	TGGCCA	1 cut(s)	1023
Mph1103I	ATGCAT	1 cut(s)	2142
MroNI	GCCGGC	2 cut(s)	422, 1450
MroXI	GAANNNNTTC	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	1023
MseI	TTAA	2 cut(s)	659, 2153
MslI	CAYNNNNRTG	5 cut(s)	461, 521, 1544, 1937, 2239
Msp20I	TGGCCA	1 cut(s)	1023
MspA1I	CMGCKG	2 cut(s)	1508, 2049
MunI	CAATTG	2 cut(s)	1352, 1358
MvaI	CCWGG	6 cut(s)	605, 754, 1223, 1278, 1497, 2211
MvnI	CGCG	4 cut(s)	194, 278, 437, 1801
NaeI	GCCGGC	2 cut(s)	424, 1452
NarI	GGCGCC	1 cut(s)	420
NciI	CCSGG	7 cut(s)	155, 323, 365, 366, 720, 1749, 2174
NcoI	CCATGG	2 cut(s)	887, 1736
NdeI	CATATG	1 cut(s)	1292
NgoMIV	GCCGGC	2 cut(s)	422, 1450
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	4 cut(s)	69, 160, 313, 1751
NsiI	ATGCAT	1 cut(s)	2142
NspI	RCATGY	3 cut(s)	484, 1335, 1966
OliI	CACNNNNGTG	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	1608
PagI	TCATGA	1 cut(s)	1254
PceI	AGGCCT	2 cut(s)	646, 1898
PciI	ACATGT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	2 cut(s)	424, 1452
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	667, 1557, 1806
PflFI	GACNNNGTC	2 cut(s)	323, 1757
PflMI	CCANNNNNTGG	5 cut(s)	301, 585, 753, 888, 1914
PfoI	TCCNGGA	3 cut(s)	1221, 1276, 1495
PkrI	GCNGC	7 cut(s)	501, 577, 1318, 1510, 1651, 1800, 2048
Ple19I	CGATCG	1 cut(s)	108
PleI	GAGTC	3 cut(s)	1382, 1430, 2064
PluTI	GGCGCC	1 cut(s)	423
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
PpsI	GAGTC	3 cut(s)	1382, 1430, 2064
Ppu21I	YACGTR	2 cut(s)	391, 2071
PscI	ACATGT	1 cut(s)	480
PshAI	GACNNNNGTC	1 cut(s)	1955
PsiI	TTATAA	1 cut(s)	1928
Psp6I	CCWGG	6 cut(s)	603, 752, 1221, 1276, 1495, 2209
PspCI	CACGTG	1 cut(s)	391
PspEI	GGTNACC	1 cut(s)	1751
PspFI	CCCAGC	2 cut(s)	542, 1856
PspGI	CCWGG	6 cut(s)	603, 752, 1221, 1276, 1495, 2209
PspOMI	GGGCCC	1 cut(s)	1093
PspPI	GGNCC	8 cut(s)	11, 283, 368, 846, 1093, 1094, 1786, 1796
PspXI	VCTCGAGB	1 cut(s)	1608
PstNI	CAGNNNCTG	2 cut(s)	1976, 2210
PsuI	RGATCY	4 cut(s)	185, 765, 1816, 1998
PsyI	GACNNNGTC	2 cut(s)	323, 1757
PvuI	CGATCG	1 cut(s)	108
PvuII	CAGCTG	2 cut(s)	1508, 2049
RsaI	GTAC	5 cut(s)	233, 560, 1639, 2039, 2123
RsaNI	GTAC	5 cut(s)	232, 559, 1638, 2038, 2122
RseI	CAYNNNNRTG	5 cut(s)	461, 521, 1544, 1937, 2239
SaqAI	TTAA	2 cut(s)	659, 2153
SatI	GCNGC	7 cut(s)	500, 576, 1317, 1509, 1650, 1799, 2047
Sau96I	GGNCC	8 cut(s)	11, 283, 368, 846, 1093, 1094, 1786, 1796
SchI	GAGTC	3 cut(s)	1383, 1431, 2065
SduI	GDGCHC	8 cut(s)	390, 396, 573, 1097, 1245, 1691, 1944, 2086
SexAI	ACCWGGT	1 cut(s)	2209
SfaNI	GCATC	5 cut(s)	1066, 1437, 1759, 2127, 2149
SfcI	CTRYAG	1 cut(s)	1863
SfoI	GGCGCC	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	1608
SinI	GGWCC	3 cut(s)	11, 283, 846
SlaI	CTCGAG	1 cut(s)	1608
SmaI	CCCGGG	1 cut(s)	366
SmiMI	CAYNNNNRTG	5 cut(s)	461, 521, 1544, 1937, 2239
SmlI	CTYRAG	1 cut(s)	1608
SmoI	CTYRAG	1 cut(s)	1608
Sse9I	AATT	9 cut(s)	79, 97, 221, 681, 1138, 1352, 1358, 1479, 1984
SseBI	AGGCCT	2 cut(s)	646, 1898
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	5 cut(s)	648, 785, 797, 1394, 2132
StuI	AGGCCT	2 cut(s)	646, 1898
StyI	CCWWGG	3 cut(s)	865, 887, 1736
TaaI	ACNGT	3 cut(s)	127, 1162, 1954
TaiI	ACGT	6 cut(s)	167, 381, 393, 432, 1016, 2073
TaqI	TCGA	4 cut(s)	108, 260, 840, 1609
TasI	AATT	9 cut(s)	79, 97, 221, 681, 1138, 1352, 1358, 1479, 1984
TatI	WGTACW	1 cut(s)	2121
TauI	GCSGC	2 cut(s)	578, 1801
TfiI	GAWTC	3 cut(s)	667, 1557, 1806
Tru1I	TTAA	2 cut(s)	659, 2153
Tru9I	TTAA	2 cut(s)	659, 2153
TscAI	CASTG	2 cut(s)	1159, 1165
TseFI	GTSAC	4 cut(s)	69, 160, 313, 1751
TseI	GCWGC	5 cut(s)	499, 1316, 1508, 1649, 2046
Tsp45I	GTSAC	4 cut(s)	69, 160, 313, 1751
TspDTI	ATGAA	7 cut(s)	51, 1157, 1279, 1562, 1609, 1610, 2095
TspGWI	ACGGA	4 cut(s)	46, 57, 298, 2175
TspMI	CCCGGG	1 cut(s)	364
TspRI	CASTG	2 cut(s)	1159, 1165
Tth111I	GACNNNGTC	2 cut(s)	323, 1757
Van91I	CCANNNNNTGG	5 cut(s)	301, 585, 753, 888, 1914
VneI	GTGCAC	1 cut(s)	1241
VpaK11BI	GGWCC	3 cut(s)	11, 283, 846
XapI	RAATTY	4 cut(s)	79, 97, 1138, 1984
XceI	RCATGY	3 cut(s)	484, 1335, 1966
XcmI	CCANNNNNNNNNTGG	2 cut(s)	523, 1911
XhoI	CTCGAG	1 cut(s)	1608
XmaI	CCCGGG	1 cut(s)	364
XmiI	GTMKAC	2 cut(s)	432, 1016
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	5 cut(s)	648, 785, 797, 1394, 2132
Zsp2I	ATGCAT	1 cut(s)	2142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.