Rmu_sc0009734.1_g000005

oligopeptide transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009734.1
Physical Location & Seq
Reverse (-)
13111 .. 15030
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009734.1_g000005.1.cds

Sequence Viewer

Length: 1500 bp
atgttaacctccctgtcgtggatctgctggatatttccttcatcagtcctcgcccagcagatcgggtcgggtctttacgggcttggactctgcgcctttgggcttgactggtccactatctcctcctatctcggaagcccacttgcaagcccatggtttgccactgccaatgttgctgctggttttgtgcttgttgtgtatgtgttgactcccatatgttactggcttaacgtctacaaagccaaaaccttcccactattttcagacgaactcttcacagcagatggtcaagaatacaacatcacagaaatcatagactccaatttccatcttaatcttacggcgtatgaggaagaaggtccactttacattagcacatttttcgcagtgacttatggtgttggctttgctgcactcactgctacaatcgttcatgttgcactcttccatggaagggaaatatgggagcaaagcaaagcaagtttcaaggagaagaaaatggacatacacacaagacttatgcagaggtacaaccaagtgcctgagtggtggtttgtggtcattcttctgattaacattgcactcaccattttcacatgcgagtattacaatgatcaacttcaattgccttggtggggtgtccttctagcctgtgctattgccattttcttcaccctcccaatcggtatcatcacagccatcacaaatcagacaccaggcttgaatatcattactgagtacataataggttacatctacccaggatatccagttgccaatatgtgcttcaaagtctatggctacataagtatgactcaagccattacatttttgcaagactttaagcttggtcactacatgaaaatccctcctagaactatgttcatggcacaggttgttggaaccctcatagccgggcttgtctacttgagcacggcatggtggctaatggagaccatccccggcatatgtaccgacacaacatcagtttggacttgccctatggacactgtgttttacgatgcgtctgtcatatggggtctgatcggtacacgaagaatattcggggacttgggcacatatgcagcagtgaactggttcttcctaggtggtgcaattgctccagttctagtttggttagctgccaaggcatttccacaacaggagtggattcgactcatcaacatgccggttttaatcggcgcaacgggtgatatgccaccggctactgcggttaactacacttcttggatcattttgggttttctctccggttttgttgcgtacaggtatagaccagattggtggaggagacacaactatcttctttctggggcacttgatgctggtcttgcctttatgggggtactgttgtattttgcggttggattggaagacattagtcccaactggtggggaaatgaccttgatgggtgtcccttggctcaatgccctacagccgtaggggtggttgttgaaggctgccctgtttacacttga

Protein Analysis

499

Amino Acids

55.86

Weight (kDa)

4.89

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1413
AccI GTMKAC 2 cut(s) 234, 924
AciI CCGC 2 cut(s) 1232, 1382
AclWI GGATC 2 cut(s) 29, 1259
AfaI GTAC 6 cut(s) 530, 740, 973, 1051, 1286, 1368
AfiI CCNNNNNNNGG 5 cut(s) 18, 454, 635, 1362, 1413
AgsI TTSAA 5 cut(s) 487, 623, 724, 790, 1478
AjnI CCWGG 2 cut(s) 715, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 2 cut(s) 847, 1142
AluI AGCT 2 cut(s) 847, 1142
Alw21I GWGCWC 1 cut(s) 935
Alw26I GTCTC 2 cut(s) 947, 1306
AlwI GGATC 2 cut(s) 29, 1259
ApeKI GCWGC 5 cut(s) 176, 410, 1085, 1142, 1482
Asp700I GAANNNNTTC 1 cut(s) 1097
AspA2I CCTAGG 1 cut(s) 1105
AspLEI GCGC 2 cut(s) 95, 1205
AspS9I GGNCC 2 cut(s) 111, 359
AsuC2I CCSGG 2 cut(s) 916, 963
AsuHPI GGTGA 3 cut(s) 577, 664, 1223
AvaII GGWCC 2 cut(s) 111, 359
AvrII CCTAGG 1 cut(s) 1105
BaeGI GKGCMC 2 cut(s) 1079, 1339
BaeI ACNNNNGTAYC 2 cut(s) 1358, 1391
BbsI GAAGAC 1 cut(s) 1401
Bbv12I GWGCWC 1 cut(s) 935
BbvI GCAGC 5 cut(s) 163, 397, 1097, 1129, 1469
BccI CCATC 5 cut(s) 278, 336, 707, 965, 1424
BceAI ACGGC 3 cut(s) 357, 951, 1445
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 2 cut(s) 717, 762
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 2 cut(s) 916, 963
BcoDI GTCTC 2 cut(s) 947, 1306
BfaI CTAG 4 cut(s) 647, 873, 1106, 1130
BfmI CTRYAG 1 cut(s) 1455
BisI GCNGC 5 cut(s) 177, 411, 1086, 1143, 1483
BlnI CCTAGG 1 cut(s) 1105
BlsI GCNGC 5 cut(s) 178, 412, 1087, 1144, 1484
Bme1390I CCNGG 4 cut(s) 717, 762, 916, 963
Bme18I GGWCC 2 cut(s) 111, 359
BmgT120I GGNCC 2 cut(s) 111, 359
BmiI GGNNCC 1 cut(s) 904
BmrFI CCNGG 4 cut(s) 717, 762, 916, 963
BmsI GCATC 2 cut(s) 1012, 1333
BoxI GACNNNNGTC 1 cut(s) 1401
BpiI GAAGAC 1 cut(s) 1401
BpmI CTGGAG 1 cut(s) 1107
BpuEI CTTGAG 2 cut(s) 801, 949
BpuMI CCSGG 2 cut(s) 916, 963
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 8 cut(s) 152, 448, 629, 760, 961, 1105, 1146, 1440
BsaWI WCCGGW 1 cut(s) 1271
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 454, 635, 1362, 1413
Bse118I RCCGGY 2 cut(s) 1189, 1222
Bse1I ACTGG 6 cut(s) 113, 227, 770, 1100, 1124, 1415
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 2 cut(s) 717, 762
BseDI CCNNGG 8 cut(s) 152, 448, 629, 760, 961, 1105, 1146, 1440
BseGI GGATG 1 cut(s) 957
BseLI CCNNNNNNNGG 5 cut(s) 18, 454, 635, 1362, 1413
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 534, 726
BseNI ACTGG 6 cut(s) 113, 227, 770, 1100, 1124, 1415
BseRI GAGGAG 2 cut(s) 112, 1324
BseSI GKGCMC 2 cut(s) 1079, 1339
BseXI GCAGC 5 cut(s) 163, 397, 1097, 1129, 1469
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 935
BsiSI CCGG 5 cut(s) 915, 963, 1190, 1223, 1272
BslFI GGGAC 3 cut(s) 1082, 1389, 1422
BslI CCNNNNNNNGG 5 cut(s) 18, 454, 635, 1362, 1413
BsmAI GTCTC 2 cut(s) 947, 1306
BsmFI GGGAC 3 cut(s) 1082, 1389, 1422
Bso31I GGTCTC 1 cut(s) 947
Bsp1286I GDGCHC 3 cut(s) 935, 1079, 1339
Bsp143I GATC 5 cut(s) 21, 60, 613, 1044, 1251
Bsp19I CCATGG 2 cut(s) 152, 448
BspACI CCGC 2 cut(s) 1232, 1382
BspCNI CTCAG 2 cut(s) 535, 727
BspLI GGNNCC 1 cut(s) 904
BspPI GGATC 2 cut(s) 29, 1259
BspTNI GGTCTC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 2 cut(s) 1189, 1222
BsrI ACTGG 6 cut(s) 113, 227, 770, 1100, 1124, 1415
BssAI RCCGGY 2 cut(s) 1189, 1222
BssECI CCNNGG 8 cut(s) 152, 448, 629, 760, 961, 1105, 1146, 1440
BssMI GATC 5 cut(s) 21, 60, 613, 1044, 1251
BssT1I CCWWGG 6 cut(s) 152, 448, 629, 1105, 1146, 1440
Bst2UI CCWGG 2 cut(s) 717, 762
Bst4CI ACNGT 2 cut(s) 1012, 1371
Bst6I CTCTTC 2 cut(s) 278, 449
BstAPI GCANNNNNTGC 2 cut(s) 419, 1343
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 543, 735
BstDSI CCRYGG 2 cut(s) 152, 448
BstF5I GGATG 1 cut(s) 957
BstHHI GCGC 2 cut(s) 95, 1205
BstKTI GATC 5 cut(s) 24, 63, 616, 1047, 1254
BstMAI GTCTC 2 cut(s) 947, 1306
BstMBI GATC 5 cut(s) 21, 60, 613, 1044, 1251
BstMWI GCNNNNNNNGC 5 cut(s) 173, 419, 1148, 1343, 1352
BstNI CCWGG 2 cut(s) 717, 762
BstNSI RCATGY 2 cut(s) 600, 1189
BstPAI GACNNNNGTC 1 cut(s) 1401
BstSCI CCNGG 4 cut(s) 715, 760, 914, 961
BstSFI CTRYAG 1 cut(s) 1455
BstSLI GKGCMC 2 cut(s) 1079, 1339
BstV1I GCAGC 5 cut(s) 163, 397, 1097, 1129, 1469
BstV2I GAAGAC 1 cut(s) 1401
BstX2I RGATCY 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 1305
BstYI RGATCY 1 cut(s) 21
BtgI CCRYGG 2 cut(s) 152, 448
BtsCI GGATG 1 cut(s) 957
BtsI GCAGTG 4 cut(s) 162, 393, 417, 1095
BtsIMutI CAGTG 5 cut(s) 162, 393, 417, 1008, 1095
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 2 cut(s) 95, 1205
Cfr10I RCCGGY 2 cut(s) 1189, 1222
Cfr13I GGNCC 2 cut(s) 111, 359
CseI GACGC 1 cut(s) 1014
Csp6I GTAC 6 cut(s) 529, 739, 972, 1050, 1285, 1367
CspCI CAANNNNNGTGG 2 cut(s) 1148, 1183
CviAII CATG 8 cut(s) 153, 434, 449, 597, 859, 886, 939, 1186
CviQI GTAC 6 cut(s) 529, 739, 972, 1050, 1285, 1367
DdeI CTNAG 2 cut(s) 543, 735
DpnI GATC 5 cut(s) 23, 62, 615, 1046, 1253
DpnII GATC 5 cut(s) 21, 60, 613, 1044, 1251
Eam1104I CTCTTC 2 cut(s) 278, 449
EarI CTCTTC 2 cut(s) 278, 449
Eco130I CCWWGG 6 cut(s) 152, 448, 629, 1105, 1146, 1440
Eco31I GGTCTC 1 cut(s) 947
Eco32I GATATC 1 cut(s) 767
Eco47I GGWCC 2 cut(s) 111, 359
EcoRII CCWGG 2 cut(s) 715, 760
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 6 cut(s) 152, 448, 629, 1105, 1146, 1440
ErhI CCWWGG 6 cut(s) 152, 448, 629, 1105, 1146, 1440
FaeI CATG 8 cut(s) 156, 437, 452, 600, 862, 889, 942, 1189
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 3 cut(s) 1082, 1389, 1422
FatI CATG 8 cut(s) 152, 433, 448, 596, 858, 885, 938, 1185
FauNDI CATATG 4 cut(s) 215, 968, 1034, 1081
FbaI TGATCA 1 cut(s) 613
FblI GTMKAC 2 cut(s) 234, 924
Fnu4HI GCNGC 5 cut(s) 177, 411, 1086, 1143, 1483
FokI GGATG 1 cut(s) 944
Fsp4HI GCNGC 5 cut(s) 177, 411, 1086, 1143, 1483
FspBI CTAG 4 cut(s) 647, 873, 1106, 1130
GlaI GCGC 2 cut(s) 94, 1204
GluI GCNGC 5 cut(s) 177, 411, 1086, 1143, 1483
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 1107
HapII CCGG 5 cut(s) 915, 963, 1190, 1223, 1272
HgaI GACGC 1 cut(s) 1014
HhaI GCGC 2 cut(s) 95, 1205
Hin1II CATG 8 cut(s) 156, 437, 452, 600, 862, 889, 942, 1189
Hin6I GCGC 2 cut(s) 93, 1203
HinP1I GCGC 2 cut(s) 93, 1203
HincII GTYRAC 3 cut(s) 6, 207, 1237
HindII GTYRAC 3 cut(s) 6, 207, 1237
HindIII AAGCTT 1 cut(s) 845
HinfI GANTC 6 cut(s) 87, 208, 317, 814, 1171, 1176
HpaI GTTAAC 2 cut(s) 6, 1237
HpaII CCGG 5 cut(s) 915, 963, 1190, 1223, 1272
HphI GGTGA 3 cut(s) 577, 664, 1223
Hpy188I TCNGA 5 cut(s) 134, 265, 570, 711, 1044
Hpy188III TCNNGA 1 cut(s) 290
HpyAV CCTTC 6 cut(s) 48, 259, 350, 447, 653, 1472
HpyCH4III ACNGT 2 cut(s) 1012, 1371
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 8 cut(s) 146, 413, 440, 523, 581, 835, 1085, 1115
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 419, 1148, 1343, 1352
HpyF3I CTNAG 2 cut(s) 543, 735
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 8 cut(s) 156, 437, 452, 600, 862, 889, 942, 1189
HspAI GCGC 2 cut(s) 93, 1203
Ksp22I TGATCA 1 cut(s) 613
KspAI GTTAAC 2 cut(s) 6, 1237
Kzo9I GATC 5 cut(s) 21, 60, 613, 1044, 1251
LmnI GCTCC 2 cut(s) 466, 1126
Lsp1109I GCAGC 5 cut(s) 163, 397, 1097, 1129, 1469
LweI GCATC 2 cut(s) 1012, 1333
MaeI CTAG 4 cut(s) 647, 873, 1106, 1130
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 4 cut(s) 218, 388, 749, 851
MalI GATC 5 cut(s) 23, 62, 615, 1046, 1253
MboI GATC 5 cut(s) 21, 60, 613, 1044, 1251
MfeI CAATTG 2 cut(s) 623, 1116
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 3 cut(s) 935, 1079, 1339
MluCI AATT 3 cut(s) 322, 623, 1116
MlyI GAGTC 5 cut(s) 81, 202, 311, 808, 1170
MmeI TCCRAC 2 cut(s) 880, 1366
MnlI CCTC 9 cut(s) 19, 59, 133, 343, 519, 686, 879, 917, 1302
MroXI GAANNNNTTC 1 cut(s) 1097
MseI TTAA 7 cut(s) 5, 228, 333, 573, 843, 1196, 1236
MslI CAYNNNNRTG 2 cut(s) 809, 1184
MspI CCGG 5 cut(s) 915, 963, 1190, 1223, 1272
MspR9I CCNGG 4 cut(s) 717, 762, 916, 963
MunI CAATTG 2 cut(s) 623, 1116
MvaI CCWGG 2 cut(s) 717, 762
MwoI GCNNNNNNNGC 5 cut(s) 173, 419, 1148, 1343, 1352
NciI CCSGG 2 cut(s) 916, 963
NcoI CCATGG 2 cut(s) 152, 448
NdeI CATATG 4 cut(s) 215, 968, 1034, 1081
NdeII GATC 5 cut(s) 21, 60, 613, 1044, 1251
NlaIII CATG 8 cut(s) 156, 437, 452, 600, 862, 889, 942, 1189
NlaIV GGNNCC 1 cut(s) 904
NmuCI GTSAC 2 cut(s) 388, 851
NspI RCATGY 2 cut(s) 600, 1189
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 1 cut(s) 1171
PflMI CCANNNNNTGG 1 cut(s) 1413
PkrI GCNGC 5 cut(s) 178, 412, 1087, 1144, 1484
PleI GAGTC 5 cut(s) 81, 202, 311, 808, 1170
PpsI GAGTC 5 cut(s) 81, 202, 311, 808, 1170
PshAI GACNNNNGTC 1 cut(s) 1401
Psp6I CCWGG 2 cut(s) 715, 760
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 2 cut(s) 715, 760
PspN4I GGNNCC 1 cut(s) 904
PspPI GGNCC 2 cut(s) 111, 359
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 6 cut(s) 530, 740, 973, 1051, 1286, 1368
RsaNI GTAC 6 cut(s) 529, 739, 972, 1050, 1285, 1367
RseI CAYNNNNRTG 2 cut(s) 809, 1184
SaqAI TTAA 7 cut(s) 5, 228, 333, 573, 843, 1196, 1236
SatI GCNGC 5 cut(s) 177, 411, 1086, 1143, 1483
Sau3AI GATC 5 cut(s) 21, 60, 613, 1044, 1251
Sau96I GGNCC 2 cut(s) 111, 359
SchI GAGTC 5 cut(s) 81, 202, 311, 808, 1170
ScrFI CCNGG 4 cut(s) 717, 762, 916, 963
SduI GDGCHC 3 cut(s) 935, 1079, 1339
SfaNI GCATC 2 cut(s) 1012, 1333
SfcI CTRYAG 1 cut(s) 1455
SinI GGWCC 2 cut(s) 111, 359
SmiMI CAYNNNNRTG 2 cut(s) 809, 1184
SmlI CTYRAG 2 cut(s) 816, 928
SmoI CTYRAG 2 cut(s) 816, 928
Sse9I AATT 3 cut(s) 322, 623, 1116
SsiI CCGC 2 cut(s) 1232, 1382
SspI AATATT 1 cut(s) 1062
SspMI CTAG 4 cut(s) 647, 873, 1106, 1130
StyD4I CCNGG 4 cut(s) 715, 760, 914, 961
StyI CCWWGG 6 cut(s) 152, 448, 629, 1105, 1146, 1440
TaaI ACNGT 2 cut(s) 1012, 1371
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 1174
TasI AATT 3 cut(s) 322, 623, 1116
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 1 cut(s) 1171
Tru1I TTAA 7 cut(s) 5, 228, 333, 573, 843, 1196, 1236
Tru9I TTAA 7 cut(s) 5, 228, 333, 573, 843, 1196, 1236
TscAI CASTG 5 cut(s) 169, 393, 424, 1015, 1095
TseFI GTSAC 2 cut(s) 388, 851
TseI GCWGC 5 cut(s) 176, 410, 1085, 1142, 1482
Tsp45I GTSAC 2 cut(s) 388, 851
TspDTI ATGAA 4 cut(s) 30, 422, 874, 875
TspRI CASTG 5 cut(s) 169, 393, 424, 1015, 1095
Van91I CCANNNNNTGG 1 cut(s) 1413
VpaK11BI GGWCC 2 cut(s) 111, 359
XceI RCATGY 2 cut(s) 600, 1189
XcmI CCANNNNNNNNNTGG 2 cut(s) 1131, 1164
XmaJI CCTAGG 1 cut(s) 1105
XmiI GTMKAC 2 cut(s) 234, 924
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 4 cut(s) 647, 873, 1106, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.