Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Forward (+)

11510517 .. 11513955

Gene Structure 3439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGACTATTGCACCCCAAATCACATCCCCTCTTCTTCAGAACAAGAACAACAAGAACTATGCTTCGGCTTCATCTCCGGCGCCGGAGGACACTTCCCCGATCGAGCAAGTCGCCCTCACCGTTCCGGTCACCGACGACCCTTCCCTCCCGGCCGTCACGTTCCGAACATGGACGCTCGGATCCCTCGCGTGTGTTCTGCTCTCCTTCCTCAACCAATTCTTCTGGTACCGGAGAGAGCCTCTCTCCCTGACCTCGATCTCCGCGCAGATCGCGGTGGTCCCGCTCGGCCACCTCATGGCCTCCGTCCTCACCGACCGGGTCTTCTTCCAGGGGCGGAAATGGGAATTCACACTCAACCCGGGGCCGTTCAACGTCAAGGAGCACGTGCTCATCACGATCTTCGCCAACTCCGGCGCCGGCAACGTCTACGCGATCCACATAGTGAGCACCATCAAGGTCTTTTACAAGAAGAACATGTCGTTTTGGGTGGCGCTGCTCGTCGTTTTGACCACTCAGGTGTTGGGGTTCGGCTGGGCCGGGCTTTTCCGCCGGTACTTGGTCCAGCCCGCCGCCATGTGGTGGCCTCATAATCTCGTCCAGGTTTCGCTCTTCAGAGCATTGCATGAGAAGGAGGAGAGGCCAAGAGGTGGATTGACAAGGAATCAGTTCTTCCTCATTGCTTTCACTTGCAGCTTTGCTTATTATGTTCTTCCGGGCTACTTATTCCCAATGTTATCTTCCCTTTCCTGGGTCTGCTGGATCTTCCCTGCTTCAGTTCTAGCCCATCAGCTAGGGTCAGGACTGCATGGTCTTGGGATCGGTGCTATCGGTCTCGATTGGTCCAGCATTTCCTCTTACCTTGGAAGCCCACTTGCCAGTCCATGGTTTGCTACTGCTAATGTTGCTGCTGGTTTTGCCCTTGTGATGTATGTCATTACTCCTGTGGCTTATTGGCTCAATGTGTATAAAGCAAAAACCTTCCCCATATTCTCAGATGGATTGTTCACGTCTACCGGCCAAAGCTACAACATTTCAGCTATAATAGACCCCAACTTCCGGCTTGACATTGATGCATACGAGCGAGAGGGTCCTCTCCATATCAGTACCTTTTTTGCTATCACCTATGGTGTCAATTTTGCTTGCCTTACTGCCACTGTTGTTCATGTTCTCCTCTTCAATGGGAGAGACATCTGGGAGCTAAGCAAGTCTGCCTTCCAAGAGAAGAAGACAGATGTGCACACAAAGCTCATGAGAAGATATAAGCAAGTCCCTGGATGGTGGTTCGTATGTATCCTTGTGGCTAACATAGCCGCGACCATATTTACATGCCATTATTACAACGACCAATTGCAATTGCAATGGTGGGGGGTCTTGCTTGCTTGTGGTCTAGCCTTGTTTTTCACTCTACCTGTTGGAGTCATTTATGCCACAACCAATCAGATGCCAACTTTGAATGTGATCACAGAGTACATAATTGGGTATCTGTATCCGGGATATCCAGCTGCTAACATATTATTCAAAGTATATGGACACATAAGCATGAAACAAGGAATCAATTTTCTCGAAGACTTCAAGCTTGGACACTACATGAAGATTGCTCCTCGAGCAATGTTCATGGCACAGGTAGTTGGTACTATCATAGCAGCACTTGTGCATTTGGGAACTGCATGGTGGCTTATGAGCACAATCCCTGACATATGCGACAGGGCGTTACTACCAGCAGAGAGCCCATGGACTTGCCCCGGTGACCATGTCTTCTACGATGCTTCTGTTATCTGGGGCCTTGTCGGGCCTCGCAGAATCTTTGGGGACCTTGGCTACTATTCGGCTATCAACTGGTTTTTCTTAGCTGGGGCTATAGCTCCTGCCCTTGTTTGGCTTGCACACAAGACCTTCCCAACCAAACAATGGATTAGACTTATTACAATGCCTGTGCTCTTAGGGACAGTAGTCAACATGCCTCCAGCTACTGCTGTGAATTTCACTAGCTGGATCCTCATTGGATTCGCCTCAGGCTTTGTTGCTTACAGGTACTACCGCAGCTGGTGGAGCCGTCATAACTATGTGCTTTCTGGAGCTCTGGATGCTGGATTAGCCTTTATGGCGGTAATTTTGTACTTGTGTCTAGGGATGCAACATGTCCACTTAAAATGGTGGGGAAGTACGCCGGATGGTTGCCCGTTGGCTTCTTGCTCAACGGAGCCAGGTGTTCTGATTACGGGCTGTCCATTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

745

Amino Acids

83.18

Weight (kDa)

8.85

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	52 - 708	1.1e-170	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	807
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	3 cut(s)	79, 225, 413
AccB7I	CCANNNNNTGG	5 cut(s)	295, 579, 647, 882, 1908
AccBSI	CCGCTC	1 cut(s)	283
AccI	GTMKAC	2 cut(s)	426, 1010
AccII	CGCG	5 cut(s)	188, 263, 272, 431, 1313
AclWI	GGATC	7 cut(s)	174, 187, 427, 767, 824, 1987, 2000
AcoI	YGGCCR	3 cut(s)	150, 286, 1015
AcsI	RAATTY	2 cut(s)	344, 1978
AcuI	CTGAAG	3 cut(s)	20, 595, 756
AcvI	CACGTG	1 cut(s)	385
AcyI	GRCGYC	2 cut(s)	80, 414
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	8 cut(s)	227, 554, 1105, 1469, 1633, 2033, 2117, 2164
AflIII	ACRYGT	2 cut(s)	474, 2137
AgsI	TTSAA	5 cut(s)	370, 1177, 1453, 1519, 1573
AjiI	CACGTC	1 cut(s)	1008
AjnI	CCWGG	5 cut(s)	327, 597, 746, 1270, 2203
AjuI	GAANNNNNNNTTGG	2 cut(s)	721, 753
AleI	CACNNNNGTG	1 cut(s)	515
Alw21I	GWGCWC	7 cut(s)	384, 390, 449, 1239, 1685, 1938, 2080
Alw26I	GTCTC	2 cut(s)	836, 1179
Alw44I	GTGCAC	1 cut(s)	1235
AlwI	GGATC	7 cut(s)	174, 187, 427, 767, 824, 1987, 2000
AlwNI	CAGNNNCTG	1 cut(s)	1970
Ama87I	CYCGRG	2 cut(s)	358, 1602
ApaLI	GTGCAC	1 cut(s)	1235
ApeKI	GCWGC	6 cut(s)	493, 690, 905, 1502, 1643, 2040
ApoI	RAATTY	2 cut(s)	344, 1978
Asp700I	GAANNNNTTC	1 cut(s)	665
Asp718I	GGTACC	1 cut(s)	225
AspLEI	GCGC	4 cut(s)	82, 265, 416, 493
AspS9I	GGNCC	9 cut(s)	277, 362, 534, 559, 840, 1088, 1780, 1790, 1810
AsuC2I	CCSGG	8 cut(s)	149, 317, 359, 360, 538, 714, 1491, 1743
AsuHPI	GGTGA	5 cut(s)	109, 121, 301, 1111, 1757
AvaI	CYCGRG	2 cut(s)	358, 1602
AvaII	GGWCC	5 cut(s)	277, 559, 840, 1088, 1810
AxyI	CCTNAGG	1 cut(s)	2011
BaeGI	GKGCMC	1 cut(s)	1239
BamHI	GGATCC	2 cut(s)	179, 1992
BanI	GGYRCC	3 cut(s)	79, 225, 413
BanII	GRGCYC	2 cut(s)	1730, 2080
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	4 cut(s)	313, 1232, 1572, 1747
Bbv12I	GWGCWC	7 cut(s)	384, 390, 449, 1239, 1685, 1938, 2080
BbvI	GCAGC	6 cut(s)	480, 702, 892, 1489, 1655, 2052
BccI	CCATC	5 cut(s)	458, 792, 989, 1269, 2165
BceAI	ACGGC	3 cut(s)	137, 349, 2037
BciT130I	CCWGG	5 cut(s)	329, 599, 748, 1272, 2205
BciVI	GTATCC	2 cut(s)	1301, 1497
BclI	TGATCA	1 cut(s)	1458
BcnI	CCSGG	8 cut(s)	149, 317, 359, 360, 538, 714, 1491, 1743
BcoDI	GTCTC	2 cut(s)	836, 1179
BfaI	CTAG	5 cut(s)	779, 791, 1388, 1986, 2126
BfmI	CTRYAG	1 cut(s)	1857
BfoI	RGCGCY	3 cut(s)	83, 417, 494
BfuI	GTATCC	2 cut(s)	1301, 1497
BglI	GCCNNNNNGGC	1 cut(s)	2102
BisI	GCNGC	8 cut(s)	494, 570, 691, 906, 1311, 1503, 1644, 2041
BlpI	GCTNAGC	1 cut(s)	1199
BlsI	GCNGC	8 cut(s)	495, 571, 692, 907, 1312, 1504, 1645, 2042
Bme18I	GGWCC	5 cut(s)	277, 559, 840, 1088, 1810
BmeT110I	CYCGRG	2 cut(s)	358, 1602
BmgBI	CACGTC	1 cut(s)	1008
BmgT120I	GGNCC	9 cut(s)	277, 362, 534, 559, 840, 1088, 1780, 1790, 1810
BmsI	GCATC	5 cut(s)	1060, 1431, 1753, 2074, 2121
BoxI	GACNNNNGTC	1 cut(s)	1949
BpiI	GAAGAC	4 cut(s)	313, 1232, 1572, 1747
BplI	GAGNNNNNCTC	6 cut(s)	223, 255, 225, 257, 227, 259
BpmI	CTGGAG	2 cut(s)	1947, 2094
Bpu1102I	GCTNAGC	1 cut(s)	1199
BpuMI	CCSGG	8 cut(s)	149, 317, 359, 360, 538, 714, 1491, 1743
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	80, 414
BsaI	GGTCTC	1 cut(s)	836
BsaWI	WCCGGW	2 cut(s)	124, 228
Bse118I	RCCGGY	3 cut(s)	416, 549, 1013
Bse1I	ACTGG	2 cut(s)	876, 1841
Bse21I	CCTNAGG	1 cut(s)	2011
Bse3DI	GCAATG	4 cut(s)	617, 675, 1364, 1614
BseBI	CCWGG	5 cut(s)	329, 599, 748, 1272, 2205
BseGI	GGATG	5 cut(s)	23, 1280, 2089, 2136, 2176
BseMI	GCAATG	4 cut(s)	617, 675, 1364, 1614
BseMII	CTCAG	3 cut(s)	527, 1005, 2025
BseNI	ACTGG	2 cut(s)	876, 1841
BseRI	GAGGAG	3 cut(s)	647, 1160, 1590
BseSI	GKGCMC	1 cut(s)	1239
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	6 cut(s)	480, 702, 892, 1489, 1655, 2052
BseYI	CCCAGC	2 cut(s)	531, 1850
Bsh1236I	CGCG	5 cut(s)	188, 263, 272, 431, 1313
Bsh1285I	CGRYCG	3 cut(s)	102, 153, 316
BshNI	GGYRCC	3 cut(s)	79, 225, 413
BsiEI	CGRYCG	3 cut(s)	102, 153, 316
BsiHKAI	GWGCWC	7 cut(s)	384, 390, 449, 1239, 1685, 1938, 2080
BsiHKCI	CYCGRG	2 cut(s)	358, 1602
BslFI	GGGAC	4 cut(s)	263, 1253, 1823, 1957
BsmAI	GTCTC	2 cut(s)	836, 1179
BsmFI	GGGAC	4 cut(s)	263, 1253, 1823, 1957
Bso31I	GGTCTC	1 cut(s)	836
BsoBI	CYCGRG	2 cut(s)	358, 1602
Bsp1286I	GDGCHC	8 cut(s)	384, 390, 449, 1239, 1685, 1730, 1938, 2080
Bsp1720I	GCTNAGC	1 cut(s)	1199
Bsp19I	CCATGG	2 cut(s)	881, 1730
BspCNI	CTCAG	3 cut(s)	526, 1004, 2024
BspFNI	CGCG	5 cut(s)	188, 263, 272, 431, 1313
BspHI	TCATGA	1 cut(s)	1248
BspPI	GGATC	7 cut(s)	174, 187, 427, 767, 824, 1987, 2000
BspQI	GCTCTTC	1 cut(s)	614
BspT107I	GGYRCC	3 cut(s)	79, 225, 413
BspTNI	GGTCTC	1 cut(s)	836
BsrBI	CCGCTC	1 cut(s)	283
BsrDI	GCAATG	4 cut(s)	617, 675, 1364, 1614
BsrFI	RCCGGY	3 cut(s)	416, 549, 1013
BsrI	ACTGG	2 cut(s)	876, 1841
BssAI	RCCGGY	3 cut(s)	416, 549, 1013
BssNI	GRCGYC	2 cut(s)	80, 414
BssT1I	CCWWGG	4 cut(s)	859, 881, 1730, 1813
Bst2UI	CCWGG	5 cut(s)	329, 599, 748, 1272, 2205
Bst4CI	ACNGT	3 cut(s)	121, 1156, 1948
Bst6I	CTCTTC	3 cut(s)	36, 614, 1178
BstACI	GRCGYC	2 cut(s)	80, 414
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	5 cut(s)	418, 567, 1141, 1377, 1881
BstDEI	CTNAG	6 cut(s)	513, 991, 1199, 1846, 1939, 2011
BstDSI	CCRYGG	2 cut(s)	881, 1730
BstEII	GGTNACC	2 cut(s)	127, 1745
BstF5I	GGATG	5 cut(s)	23, 1280, 2089, 2136, 2176
BstFNI	CGCG	5 cut(s)	188, 263, 272, 431, 1313
BstH2I	RGCGCY	3 cut(s)	83, 417, 494
BstHHI	GCGC	4 cut(s)	82, 265, 416, 493
BstMAI	GTCTC	2 cut(s)	836, 1179
BstMCI	CGRYCG	3 cut(s)	102, 153, 316
BstNI	CCWGG	5 cut(s)	329, 599, 748, 1272, 2205
BstNSI	RCATGY	4 cut(s)	478, 1329, 1960, 2141
BstPAI	GACNNNNGTC	1 cut(s)	1949
BstPI	GGTNACC	2 cut(s)	127, 1745
BstSFI	CTRYAG	1 cut(s)	1857
BstSLI	GKGCMC	1 cut(s)	1239
BstUI	CGCG	5 cut(s)	188, 263, 272, 431, 1313
BstV1I	GCAGC	6 cut(s)	480, 702, 892, 1489, 1655, 2052
BstV2I	GAAGAC	4 cut(s)	313, 1232, 1572, 1747
BstX2I	RGATCY	3 cut(s)	179, 759, 1992
BstYI	RGATCY	3 cut(s)	179, 759, 1992
BstZI	CGGCCG	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	2011
BsuI	GTATCC	2 cut(s)	1301, 1497
BtgI	CCRYGG	2 cut(s)	881, 1730
BtrI	CACGTC	1 cut(s)	1008
BtsCI	GGATG	5 cut(s)	23, 1280, 2089, 2136, 2176
BtsIMutI	CAGTG	1 cut(s)	1152
Cac8I	GCNNGC	5 cut(s)	418, 567, 1141, 1377, 1881
CaiI	CAGNNNCTG	1 cut(s)	1970
CciI	TCATGA	1 cut(s)	1248
CfoI	GCGC	4 cut(s)	82, 265, 416, 493
Cfr10I	RCCGGY	3 cut(s)	416, 549, 1013
Cfr13I	GGNCC	9 cut(s)	277, 362, 534, 559, 840, 1088, 1780, 1790, 1810
Cfr9I	CCCGGG	1 cut(s)	358
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	8 cut(s)	226, 553, 1104, 1468, 1632, 2032, 2116, 2163
CviQI	GTAC	8 cut(s)	226, 553, 1104, 1468, 1632, 2032, 2116, 2163
DdeI	CTNAG	6 cut(s)	513, 991, 1199, 1846, 1939, 2011
DinI	GGCGCC	2 cut(s)	81, 415
DraIII	CACNNNGTG	1 cut(s)	442
DrdI	GACNNNNNNGTC	1 cut(s)	807
DseDI	GACNNNNNNGTC	1 cut(s)	807
EaeI	YGGCCR	3 cut(s)	150, 286, 1015
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	3 cut(s)	36, 614, 1178
EarI	CTCTTC	3 cut(s)	36, 614, 1178
EciI	GGCGGA	2 cut(s)	349, 536
Ecl136II	GAGCTC	1 cut(s)	2078
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	4 cut(s)	859, 881, 1730, 1813
Eco24I	GRGCYC	2 cut(s)	1730, 2080
Eco31I	GGTCTC	1 cut(s)	836
Eco32I	GATATC	1 cut(s)	1496
Eco47I	GGWCC	5 cut(s)	277, 559, 840, 1088, 1810
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	2078
Eco57I	CTGAAG	3 cut(s)	20, 595, 756
Eco72I	CACGTG	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	2011
Eco88I	CYCGRG	2 cut(s)	358, 1602
Eco91I	GGTNACC	2 cut(s)	127, 1745
EcoICRI	GAGCTC	1 cut(s)	2078
EcoO109I	RGGNCCY	3 cut(s)	1088, 1780, 1810
EcoO65I	GGTNACC	2 cut(s)	127, 1745
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	5 cut(s)	327, 597, 746, 1270, 2203
EcoRV	GATATC	1 cut(s)	1496
EcoT14I	CCWWGG	4 cut(s)	859, 881, 1730, 1813
EcoT22I	ATGCAT	1 cut(s)	1075
EcoT38I	GRGCYC	2 cut(s)	1730, 2080
EgeI	GGCGCC	2 cut(s)	81, 415
EheI	GGCGCC	2 cut(s)	81, 415
ErhI	CCWWGG	4 cut(s)	859, 881, 1730, 1813
FalI	AAGNNNNNCTT	2 cut(s)	1196, 1228
FaqI	GGGAC	4 cut(s)	263, 1253, 1823, 1957
FauI	CCCGC	2 cut(s)	288, 574
FauNDI	CATATG	1 cut(s)	1697
FbaI	TGATCA	1 cut(s)	1458
FblI	GTMKAC	2 cut(s)	426, 1010
Fnu4HI	GCNGC	8 cut(s)	494, 570, 691, 906, 1311, 1503, 1644, 2041
FokI	GGATG	5 cut(s)	10, 1287, 2096, 2143, 2183
FriOI	GRGCYC	2 cut(s)	1730, 2080
Fsp4HI	GCNGC	8 cut(s)	494, 570, 691, 906, 1311, 1503, 1644, 2041
FspBI	CTAG	5 cut(s)	779, 791, 1388, 1986, 2126
GlaI	GCGC	4 cut(s)	81, 264, 415, 492
GluI	GCNGC	8 cut(s)	494, 570, 691, 906, 1311, 1503, 1644, 2041
GsaI	CCCAGC	2 cut(s)	535, 1854
GsuI	CTGGAG	2 cut(s)	1947, 2094
HaeII	RGCGCY	3 cut(s)	83, 417, 494
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	4 cut(s)	82, 265, 416, 493
Hin1I	GRCGYC	2 cut(s)	80, 414
Hin6I	GCGC	4 cut(s)	80, 263, 414, 491
HinP1I	GCGC	4 cut(s)	80, 263, 414, 491
HincII	GTYRAC	1 cut(s)	1954
HindII	GTYRAC	1 cut(s)	1954
HindIII	AAGCTT	1 cut(s)	1574
HinfI	GANTC	5 cut(s)	661, 1416, 1551, 1800, 2004
HphI	GGTGA	5 cut(s)	109, 121, 301, 1111, 1757
Hpy166II	GTNNAC	6 cut(s)	427, 1005, 1011, 1237, 1954, 2143
Hpy188I	TCNGA	7 cut(s)	39, 164, 179, 614, 994, 1440, 2214
Hpy188III	TCNNGA	7 cut(s)	394, 798, 833, 1249, 1562, 2073, 2081
Hpy8I	GTNNAC	6 cut(s)	427, 1005, 1011, 1237, 1954, 2143
Hpy99I	CGWCG	2 cut(s)	137, 503
HpyAV	CCTTC	6 cut(s)	150, 214, 622, 988, 1222, 1903
HpyCH4III	ACNGT	3 cut(s)	121, 1156, 1948
HpyCH4IV	ACGT	5 cut(s)	158, 372, 384, 423, 1007
HpyF3I	CTNAG	6 cut(s)	513, 991, 1199, 1846, 1939, 2011
HpySE526I	ACGT	5 cut(s)	158, 372, 384, 423, 1007
Hsp92I	GRCGYC	2 cut(s)	80, 414
HspAI	GCGC	4 cut(s)	80, 263, 414, 491
KasI	GGCGCC	2 cut(s)	79, 413
KpnI	GGTACC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	1458
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	7 cut(s)	379, 1195, 1603, 1867, 2049, 2075, 2200
Lsp1109I	GCAGC	6 cut(s)	480, 702, 892, 1489, 1655, 2052
LweI	GCATC	5 cut(s)	1060, 1431, 1753, 2074, 2121
MaeI	CTAG	5 cut(s)	779, 791, 1388, 1986, 2126
MaeII	ACGT	5 cut(s)	158, 372, 384, 423, 1007
MaeIII	GTNAC	4 cut(s)	127, 154, 1710, 1745
MbiI	CCGCTC	1 cut(s)	283
MfeI	CAATTG	2 cut(s)	1346, 1352
MflI	RGATCY	3 cut(s)	179, 759, 1992
MhlI	GDGCHC	8 cut(s)	384, 390, 449, 1239, 1685, 1730, 1938, 2080
MluCI	AATT	9 cut(s)	215, 344, 1132, 1346, 1352, 1473, 1555, 1978, 2109
Mly113I	GGCGCC	2 cut(s)	80, 414
MlyI	GAGTC	1 cut(s)	1425
MmeI	TCCRAC	1 cut(s)	1393
Mph1103I	ATGCAT	1 cut(s)	1075
MroNI	GCCGGC	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	1 cut(s)	2147
MslI	CAYNNNNRTG	4 cut(s)	515, 1538, 2061, 2233
MspA1I	CMGCKG	2 cut(s)	1502, 2043
MunI	CAATTG	2 cut(s)	1346, 1352
MvaI	CCWGG	5 cut(s)	329, 599, 748, 1272, 2205
MvnI	CGCG	5 cut(s)	188, 263, 272, 431, 1313
NaeI	GCCGGC	1 cut(s)	418
NarI	GGCGCC	2 cut(s)	80, 414
NciI	CCSGG	8 cut(s)	149, 317, 359, 360, 538, 714, 1491, 1743
NcoI	CCATGG	2 cut(s)	881, 1730
NdeI	CATATG	1 cut(s)	1697
NgoMIV	GCCGGC	1 cut(s)	416
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	3 cut(s)	127, 154, 1745
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	4 cut(s)	478, 1329, 1960, 2141
OliI	CACNNNNGTG	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	1602
PagI	TCATGA	1 cut(s)	1248
PciI	ACATGT	2 cut(s)	474, 2137
PciSI	GCTCTTC	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	4 cut(s)	661, 1551, 1800, 2004
PflFI	GACNNNGTC	2 cut(s)	317, 1751
PflMI	CCANNNNNTGG	5 cut(s)	295, 579, 647, 882, 1908
PfoI	TCCNGGA	1 cut(s)	1489
PkrI	GCNGC	8 cut(s)	495, 571, 692, 907, 1312, 1504, 1645, 2042
Ple19I	CGATCG	1 cut(s)	102
PleI	GAGTC	1 cut(s)	1424
PluTI	GGCGCC	2 cut(s)	83, 417
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	1424
Ppu21I	YACGTR	1 cut(s)	385
PpuMI	RGGWCCY	2 cut(s)	1088, 1810
PscI	ACATGT	2 cut(s)	474, 2137
PshAI	GACNNNNGTC	1 cut(s)	1949
Psp124BI	GAGCTC	1 cut(s)	2080
Psp5II	RGGWCCY	2 cut(s)	1088, 1810
Psp6I	CCWGG	5 cut(s)	327, 597, 746, 1270, 2203
PspCI	CACGTG	1 cut(s)	385
PspEI	GGTNACC	2 cut(s)	127, 1745
PspFI	CCCAGC	2 cut(s)	531, 1850
PspGI	CCWGG	5 cut(s)	327, 597, 746, 1270, 2203
PspPI	GGNCC	9 cut(s)	277, 362, 534, 559, 840, 1088, 1780, 1790, 1810
PspPPI	RGGWCCY	2 cut(s)	1088, 1810
PspXI	VCTCGAGB	1 cut(s)	1602
PstNI	CAGNNNCTG	1 cut(s)	1970
PsuI	RGATCY	3 cut(s)	179, 759, 1992
PsyI	GACNNNGTC	2 cut(s)	317, 1751
PvuI	CGATCG	1 cut(s)	102
PvuII	CAGCTG	2 cut(s)	1502, 2043
RsaI	GTAC	8 cut(s)	227, 554, 1105, 1469, 1633, 2033, 2117, 2164
RsaNI	GTAC	8 cut(s)	226, 553, 1104, 1468, 1632, 2032, 2116, 2163
RseI	CAYNNNNRTG	4 cut(s)	515, 1538, 2061, 2233
SacI	GAGCTC	1 cut(s)	2080
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	2147
SatI	GCNGC	8 cut(s)	494, 570, 691, 906, 1311, 1503, 1644, 2041
Sau96I	GGNCC	9 cut(s)	277, 362, 534, 559, 840, 1088, 1780, 1790, 1810
SchI	GAGTC	1 cut(s)	1425
SduI	GDGCHC	8 cut(s)	384, 390, 449, 1239, 1685, 1730, 1938, 2080
SfaNI	GCATC	5 cut(s)	1060, 1431, 1753, 2074, 2121
SfcI	CTRYAG	1 cut(s)	1857
SfoI	GGCGCC	2 cut(s)	81, 415
Sfr274I	CTCGAG	1 cut(s)	1602
SinI	GGWCC	5 cut(s)	277, 559, 840, 1088, 1810
SlaI	CTCGAG	1 cut(s)	1602
SmaI	CCCGGG	1 cut(s)	360
SmiMI	CAYNNNNRTG	4 cut(s)	515, 1538, 2061, 2233
SmlI	CTYRAG	1 cut(s)	1602
SmoI	CTYRAG	1 cut(s)	1602
Sse9I	AATT	9 cut(s)	215, 344, 1132, 1346, 1352, 1473, 1555, 1978, 2109
SspDI	GGCGCC	2 cut(s)	79, 413
SspMI	CTAG	5 cut(s)	779, 791, 1388, 1986, 2126
SstI	GAGCTC	1 cut(s)	2080
StyI	CCWWGG	4 cut(s)	859, 881, 1730, 1813
TaaI	ACNGT	3 cut(s)	121, 1156, 1948
TaiI	ACGT	5 cut(s)	161, 375, 387, 426, 1010
TaqI	TCGA	5 cut(s)	102, 254, 834, 1563, 1603
TaqII	GACCGA	1 cut(s)	818
TasI	AATT	9 cut(s)	215, 344, 1132, 1346, 1352, 1473, 1555, 1978, 2109
TatI	WGTACW	2 cut(s)	1467, 2115
TauI	GCSGC	2 cut(s)	572, 1313
TfiI	GAWTC	4 cut(s)	661, 1551, 1800, 2004
Tru1I	TTAA	1 cut(s)	2147
Tru9I	TTAA	1 cut(s)	2147
TscAI	CASTG	1 cut(s)	1159
TseFI	GTSAC	3 cut(s)	127, 154, 1745
TseI	GCWGC	6 cut(s)	493, 690, 905, 1502, 1643, 2040
Tsp45I	GTSAC	3 cut(s)	127, 154, 1745
TspDTI	ATGAA	5 cut(s)	60, 1151, 1556, 1603, 1604
TspGWI	ACGGA	2 cut(s)	292, 2213
TspMI	CCCGGG	1 cut(s)	358
TspRI	CASTG	1 cut(s)	1159
Tth111I	GACNNNGTC	2 cut(s)	317, 1751
Van91I	CCANNNNNTGG	5 cut(s)	295, 579, 647, 882, 1908
VneI	GTGCAC	1 cut(s)	1235
VpaK11BI	GGWCC	5 cut(s)	277, 559, 840, 1088, 1810
XapI	RAATTY	2 cut(s)	344, 1978
XceI	RCATGY	4 cut(s)	478, 1329, 1960, 2141
XcmI	CCANNNNNNNNNTGG	2 cut(s)	517, 1905
XhoI	CTCGAG	1 cut(s)	1602
XmaI	CCCGGG	1 cut(s)	358
XmiI	GTMKAC	2 cut(s)	426, 1010
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	5 cut(s)	779, 791, 1388, 1986, 2126
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.