oligopeptide transporter
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| OPT | PF03169 | 75 - 728 | 1.1e-174 | OPT oligopeptide transporter protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1982, 2000 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 811 |
| AatII | GACGTC | 1 cut(s) | 809 |
| Acc65I | GGTACC | 1 cut(s) | 1006 |
| AccB1I | GGYRCC | 2 cut(s) | 1006, 1510 |
| AccBSI | CCGCTC | 1 cut(s) | 332 |
| AccII | CGCG | 4 cut(s) | 479, 1310, 2006, 2261 |
| AccIII | TCCGGA | 1 cut(s) | 2072 |
| AciI | CCGC | 9 cut(s) | 330, 479, 638, 1209, 1494, 2021, 2025, 2259, 2288 |
| AclI | AACGTT | 2 cut(s) | 548, 1374 |
| AclWI | GGATC | 5 cut(s) | 120, 200, 409, 496, 1979 |
| AcoI | YGGCCR | 1 cut(s) | 650 |
| AcyI | GRCGYC | 2 cut(s) | 806, 1511 |
| AfaI | GTAC | 9 cut(s) | 348, 730, 1008, 1034, 1094, 1305, 1328, 1453, 2093 |
| AfeI | AGCGCT | 1 cut(s) | 1219 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 717, 1252, 1433, 1732, 1896 |
| AflIII | ACRYGT | 3 cut(s) | 505, 725, 1796 |
| AgsI | TTSAA | 9 cut(s) | 424, 632, 668, 1089, 1421, 1522, 1634, 1947, 2279 |
| AjnI | CCWGG | 5 cut(s) | 427, 1080, 1513, 1558, 2263 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2189, 2221 |
| AleI | CACNNNNGTG | 1 cut(s) | 584 |
| AluBI | AGCT | 8 cut(s) | 485, 686, 1065, 1645, 1943, 1978, 2013, 2227 |
| AluI | AGCT | 8 cut(s) | 485, 686, 1065, 1645, 1943, 1978, 2013, 2227 |
| Alw21I | GWGCWC | 1 cut(s) | 1067 |
| Alw26I | GTCTC | 3 cut(s) | 365, 676, 1745 |
| AlwI | GGATC | 5 cut(s) | 120, 200, 409, 496, 1979 |
| Aor13HI | TCCGGA | 1 cut(s) | 2072 |
| Aor51HI | AGCGCT | 1 cut(s) | 1219 |
| AoxI | GGCC | 7 cut(s) | 650, 849, 891, 1038, 1156, 2096, 2244 |
| ApeKI | GCWGC | 1 cut(s) | 368 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| Asp718I | GGTACC | 1 cut(s) | 1006 |
| AspLEI | GCGC | 5 cut(s) | 1220, 1513, 1916, 2006, 2263 |
| AspS9I | GGNCC | 6 cut(s) | 431, 708, 850, 891, 1157, 1850 |
| AsuC2I | CCSGG | 1 cut(s) | 783 |
| AsuHPI | GGTGA | 6 cut(s) | 156, 370, 1003, 1483, 1492, 1843 |
| AvaII | GGWCC | 3 cut(s) | 431, 708, 1850 |
| BanI | GGYRCC | 2 cut(s) | 1006, 1510 |
| BanII | GRGCYC | 1 cut(s) | 1067 |
| BauI | CACGAG | 1 cut(s) | 692 |
| BbsI | GAAGAC | 2 cut(s) | 382, 863 |
| Bbv12I | GWGCWC | 1 cut(s) | 1067 |
| BbvI | GCAGC | 1 cut(s) | 355 |
| BceAI | ACGGC | 4 cut(s) | 326, 978, 1749, 2018 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1162, 1196, 1300, 1334 |
| BciT130I | CCWGG | 5 cut(s) | 429, 1082, 1515, 1560, 2265 |
| BciVI | GTATCC | 1 cut(s) | 1592 |
| BclI | TGATCA | 1 cut(s) | 459 |
| BcnI | CCSGG | 1 cut(s) | 783 |
| BcoDI | GTCTC | 3 cut(s) | 365, 676, 1745 |
| BfaI | CTAG | 3 cut(s) | 945, 1671, 1959 |
| BfmI | CTRYAG | 1 cut(s) | 1917 |
| BfoI | RGCGCY | 3 cut(s) | 1221, 1514, 1917 |
| BfuI | GTATCC | 1 cut(s) | 1592 |
| BglII | AGATCT | 2 cut(s) | 46, 1870 |
| BisI | GCNGC | 4 cut(s) | 369, 639, 1209, 2021 |
| BlsI | GCNGC | 4 cut(s) | 370, 640, 1210, 2022 |
| Bme1390I | CCNGG | 6 cut(s) | 429, 783, 1082, 1515, 1560, 2265 |
| Bme18I | GGWCC | 3 cut(s) | 431, 708, 1850 |
| BmgT120I | GGNCC | 6 cut(s) | 431, 708, 850, 891, 1157, 1850 |
| BmiI | GGNNCC | 4 cut(s) | 892, 1008, 1381, 1512 |
| BmrFI | CCNGG | 6 cut(s) | 429, 783, 1082, 1515, 1560, 2265 |
| BmsI | GCATC | 6 cut(s) | 270, 1813, 1835, 2007, 2134, 2273 |
| BpiI | GAAGAC | 2 cut(s) | 382, 863 |
| BpuEI | CTTGAG | 1 cut(s) | 2213 |
| BpuMI | CCSGG | 1 cut(s) | 783 |
| BsaAI | YACGTR | 2 cut(s) | 728, 2298 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2068 |
| BsaHI | GRCGYC | 2 cut(s) | 806, 1511 |
| BsaI | GGTCTC | 1 cut(s) | 1745 |
| BsaJI | CCNNGG | 6 cut(s) | 397, 516, 950, 1081, 1246, 1427 |
| BsaWI | WCCGGW | 1 cut(s) | 2072 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 717, 1252, 1433, 1732, 1896 |
| Bse118I | RCCGGY | 3 cut(s) | 634, 652, 1990 |
| Bse1I | ACTGG | 2 cut(s) | 911, 1568 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2068 |
| BseAI | TCCGGA | 1 cut(s) | 2072 |
| BseBI | CCWGG | 5 cut(s) | 429, 1082, 1515, 1560, 2265 |
| BseDI | CCNNGG | 6 cut(s) | 397, 516, 950, 1081, 1246, 1427 |
| BseGI | GGATG | 8 cut(s) | 261, 605, 1103, 1306, 1755, 1956, 2149, 2288 |
| BseJI | GATNNNNATC | 1 cut(s) | 2068 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 717, 1252, 1433, 1732, 1896 |
| BseNI | ACTGG | 2 cut(s) | 911, 1568 |
| BseRI | GAGGAG | 1 cut(s) | 158 |
| BseXI | GCAGC | 1 cut(s) | 355 |
| BseYI | CCCAGC | 1 cut(s) | 1138 |
| Bsh1236I | CGCG | 4 cut(s) | 479, 1310, 2006, 2261 |
| BshFI | GGCC | 7 cut(s) | 652, 851, 893, 1040, 1158, 2098, 2246 |
| BshNI | GGYRCC | 2 cut(s) | 1006, 1510 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1067 |
| BsiSI | CCGG | 5 cut(s) | 635, 653, 782, 1991, 2073 |
| BslFI | GGGAC | 2 cut(s) | 1854, 2202 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 717, 1252, 1433, 1732, 1896 |
| BsmAI | GTCTC | 3 cut(s) | 365, 676, 1745 |
| BsmBI | CGTCTC | 1 cut(s) | 365 |
| BsmFI | GGGAC | 2 cut(s) | 1854, 2202 |
| BsmI | GAATGC | 1 cut(s) | 749 |
| BsnI | GGCC | 7 cut(s) | 652, 851, 893, 1040, 1158, 2098, 2246 |
| Bso31I | GGTCTC | 1 cut(s) | 1745 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1067 |
| Bsp13I | TCCGGA | 1 cut(s) | 2072 |
| Bsp1407I | TGTACA | 2 cut(s) | 1032, 1303 |
| Bsp19I | CCATGG | 2 cut(s) | 950, 1427 |
| BspACI | CCGC | 9 cut(s) | 330, 479, 638, 1209, 1494, 2021, 2025, 2259, 2288 |
| BspANI | GGCC | 7 cut(s) | 652, 851, 893, 1040, 1158, 2098, 2246 |
| BspEI | TCCGGA | 1 cut(s) | 2072 |
| BspFNI | CGCG | 4 cut(s) | 479, 1310, 2006, 2261 |
| BspHI | TCATGA | 1 cut(s) | 801 |
| BspLI | GGNNCC | 4 cut(s) | 892, 1008, 1381, 1512 |
| BspPI | GGATC | 5 cut(s) | 120, 200, 409, 496, 1979 |
| BspT107I | GGYRCC | 2 cut(s) | 1006, 1510 |
| BspTNI | GGTCTC | 1 cut(s) | 1745 |
| BsrBI | CCGCTC | 1 cut(s) | 332 |
| BsrFI | RCCGGY | 3 cut(s) | 634, 652, 1990 |
| BsrGI | TGTACA | 2 cut(s) | 1032, 1303 |
| BsrI | ACTGG | 2 cut(s) | 911, 1568 |
| BssAI | RCCGGY | 3 cut(s) | 634, 652, 1990 |
| BssECI | CCNNGG | 6 cut(s) | 397, 516, 950, 1081, 1246, 1427 |
| BssNI | GRCGYC | 2 cut(s) | 806, 1511 |
| BssSI | CACGAG | 1 cut(s) | 692 |
| BssT1I | CCWWGG | 3 cut(s) | 397, 950, 1427 |
| Bst2BI | CACGAG | 1 cut(s) | 692 |
| Bst2UI | CCWGG | 5 cut(s) | 429, 1082, 1515, 1560, 2265 |
| Bst4CI | ACNGT | 4 cut(s) | 190, 517, 1196, 1456 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 1247 |
| BstACI | GRCGYC | 2 cut(s) | 806, 1511 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2144 |
| BstAUI | TGTACA | 2 cut(s) | 1032, 1303 |
| BstBAI | YACGTR | 2 cut(s) | 728, 2298 |
| BstC8I | GCNNGC | 4 cut(s) | 654, 1610, 2025, 2288 |
| BstDEI | CTNAG | 1 cut(s) | 244 |
| BstDSI | CCRYGG | 4 cut(s) | 516, 950, 1246, 1427 |
| BstF5I | GGATG | 8 cut(s) | 261, 605, 1103, 1306, 1755, 1956, 2149, 2288 |
| BstFNI | CGCG | 4 cut(s) | 479, 1310, 2006, 2261 |
| BstH2I | RGCGCY | 3 cut(s) | 1221, 1514, 1917 |
| BstHHI | GCGC | 5 cut(s) | 1220, 1513, 1916, 2006, 2263 |
| BstMAI | GTCTC | 3 cut(s) | 365, 676, 1745 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 329, 338, 1217, 2010, 2144, 2153 |
| BstNI | CCWGG | 5 cut(s) | 429, 1082, 1515, 1560, 2265 |
| BstNSI | RCATGY | 7 cut(s) | 238, 455, 1235, 1452, 1612, 1800, 1990 |
| BstSCI | CCNGG | 6 cut(s) | 427, 781, 1080, 1513, 1558, 2263 |
| BstSFI | CTRYAG | 1 cut(s) | 1917 |
| BstSNI | TACGTA | 1 cut(s) | 2298 |
| BstUI | CGCG | 4 cut(s) | 479, 1310, 2006, 2261 |
| BstV1I | GCAGC | 1 cut(s) | 355 |
| BstV2I | GAAGAC | 2 cut(s) | 382, 863 |
| BstX2I | RGATCY | 4 cut(s) | 46, 112, 488, 1870 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1347, 1684, 2106 |
| BstYI | RGATCY | 4 cut(s) | 46, 112, 488, 1870 |
| BsuI | GTATCC | 1 cut(s) | 1592 |
| BsuRI | GGCC | 7 cut(s) | 652, 851, 893, 1040, 1158, 2098, 2246 |
| BtgI | CCRYGG | 4 cut(s) | 516, 950, 1246, 1427 |
| BtgZI | GCGATG | 1 cut(s) | 656 |
| BtsCI | GGATG | 8 cut(s) | 261, 605, 1103, 1306, 1755, 1956, 2149, 2288 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| Cac8I | GCNNGC | 4 cut(s) | 654, 1610, 2025, 2288 |
| CciI | TCATGA | 1 cut(s) | 801 |
| CfoI | GCGC | 5 cut(s) | 1220, 1513, 1916, 2006, 2263 |
| Cfr10I | RCCGGY | 3 cut(s) | 634, 652, 1990 |
| Cfr13I | GGNCC | 6 cut(s) | 431, 708, 850, 891, 1157, 1850 |
| CseI | GACGC | 2 cut(s) | 57, 1139 |
| Csp6I | GTAC | 9 cut(s) | 347, 729, 1007, 1033, 1093, 1304, 1327, 1452, 2092 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1372, 1407 |
| CviQI | GTAC | 9 cut(s) | 347, 729, 1007, 1033, 1093, 1304, 1327, 1452, 2092 |
| DdeI | CTNAG | 1 cut(s) | 244 |
| DinI | GGCGCC | 1 cut(s) | 1512 |
| DraI | TTTAAA | 2 cut(s) | 1285, 1588 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 811 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 811 |
| EaeI | YGGCCR | 1 cut(s) | 650 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 1247 |
| EarI | CTCTTC | 2 cut(s) | 150, 1247 |
| Ecl136II | GAGCTC | 1 cut(s) | 1065 |
| Eco105I | TACGTA | 1 cut(s) | 2298 |
| Eco130I | CCWWGG | 3 cut(s) | 397, 950, 1427 |
| Eco24I | GRGCYC | 1 cut(s) | 1067 |
| Eco31I | GGTCTC | 1 cut(s) | 1745 |
| Eco32I | GATATC | 1 cut(s) | 1565 |
| Eco47I | GGWCC | 3 cut(s) | 431, 708, 1850 |
| Eco47III | AGCGCT | 1 cut(s) | 1219 |
| Eco53kI | GAGCTC | 1 cut(s) | 1065 |
| EcoICRI | GAGCTC | 1 cut(s) | 1065 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1157 |
| EcoRII | CCWGG | 5 cut(s) | 427, 1080, 1513, 1558, 2263 |
| EcoRV | GATATC | 1 cut(s) | 1565 |
| EcoT14I | CCWWGG | 3 cut(s) | 397, 950, 1427 |
| EcoT22I | ATGCAT | 2 cut(s) | 1233, 1828 |
| EcoT38I | GRGCYC | 1 cut(s) | 1067 |
| EgeI | GGCGCC | 1 cut(s) | 1512 |
| EheI | GGCGCC | 1 cut(s) | 1512 |
| ErhI | CCWWGG | 3 cut(s) | 397, 950, 1427 |
| Esp3I | CGTCTC | 1 cut(s) | 365 |
| FaqI | GGGAC | 2 cut(s) | 1854, 2202 |
| FauI | CCCGC | 3 cut(s) | 472, 2032, 2295 |
| FauNDI | CATATG | 2 cut(s) | 64, 1766 |
| FbaI | TGATCA | 1 cut(s) | 459 |
| Fnu4HI | GCNGC | 4 cut(s) | 369, 639, 1209, 2021 |
| FokI | GGATG | 8 cut(s) | 248, 612, 1090, 1313, 1742, 1963, 2156, 2295 |
| FriOI | GRGCYC | 1 cut(s) | 1067 |
| Fsp4HI | GCNGC | 4 cut(s) | 369, 639, 1209, 2021 |
| FspBI | CTAG | 3 cut(s) | 945, 1671, 1959 |
| GlaI | GCGC | 5 cut(s) | 1219, 1512, 1915, 2005, 2262 |
| GluI | GCNGC | 4 cut(s) | 369, 639, 1209, 2021 |
| GsaI | CCCAGC | 1 cut(s) | 1142 |
| HaeII | RGCGCY | 3 cut(s) | 1221, 1514, 1917 |
| HaeIII | GGCC | 7 cut(s) | 652, 851, 893, 1040, 1158, 2098, 2246 |
| HapII | CCGG | 5 cut(s) | 635, 653, 782, 1991, 2073 |
| HgaI | GACGC | 2 cut(s) | 57, 1139 |
| HhaI | GCGC | 5 cut(s) | 1220, 1513, 1916, 2006, 2263 |
| Hin1I | GRCGYC | 2 cut(s) | 806, 1511 |
| Hin6I | GCGC | 5 cut(s) | 1218, 1511, 1914, 2004, 2261 |
| HinP1I | GCGC | 5 cut(s) | 1218, 1511, 1914, 2004, 2261 |
| HincII | GTYRAC | 1 cut(s) | 912 |
| HindII | GTYRAC | 1 cut(s) | 912 |
| HindIII | AAGCTT | 2 cut(s) | 1643, 1976 |
| HinfI | GANTC | 8 cut(s) | 8, 387, 424, 658, 1115, 1772, 1860, 2064 |
| HpaII | CCGG | 5 cut(s) | 635, 653, 782, 1991, 2073 |
| HphI | GGTGA | 6 cut(s) | 156, 370, 1003, 1483, 1492, 1843 |
| Hpy166II | GTNNAC | 9 cut(s) | 417, 496, 731, 912, 938, 1033, 1306, 1723, 2038 |
| Hpy188I | TCNGA | 8 cut(s) | 13, 51, 91, 133, 173, 195, 798, 1807 |
| Hpy188III | TCNNGA | 6 cut(s) | 742, 802, 1340, 1634, 2073, 2133 |
| Hpy8I | GTNNAC | 9 cut(s) | 417, 496, 731, 912, 938, 1033, 1306, 1723, 2038 |
| Hpy99I | CGWCG | 4 cut(s) | 137, 347, 811, 1460 |
| HpyAV | CCTTC | 4 cut(s) | 219, 1057, 1245, 2273 |
| HpyCH4III | ACNGT | 4 cut(s) | 190, 517, 1196, 1456 |
| HpyCH4IV | ACGT | 8 cut(s) | 419, 507, 548, 727, 806, 1374, 1625, 2297 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 329, 338, 1217, 2010, 2144, 2153 |
| HpyF3I | CTNAG | 1 cut(s) | 244 |
| HpySE526I | ACGT | 8 cut(s) | 419, 507, 548, 727, 806, 1374, 1625, 2297 |
| Hsp92I | GRCGYC | 2 cut(s) | 806, 1511 |
| HspAI | GCGC | 5 cut(s) | 1218, 1511, 1914, 2004, 2261 |
| KasI | GGCGCC | 1 cut(s) | 1510 |
| Kpn2I | TCCGGA | 1 cut(s) | 2072 |
| KpnI | GGTACC | 1 cut(s) | 1010 |
| KroI | GCCGGC | 1 cut(s) | 652 |
| KroNI | GCCGGC | 1 cut(s) | 654 |
| Ksp22I | TGATCA | 1 cut(s) | 459 |
| LmnI | GCTCC | 4 cut(s) | 482, 1264, 1379, 2135 |
| Lsp1109I | GCAGC | 1 cut(s) | 355 |
| LweI | GCATC | 6 cut(s) | 270, 1813, 1835, 2007, 2134, 2273 |
| MaeI | CTAG | 3 cut(s) | 945, 1671, 1959 |
| MaeII | ACGT | 8 cut(s) | 419, 507, 548, 727, 806, 1374, 1625, 2297 |
| MaeIII | GTNAC | 6 cut(s) | 511, 574, 1190, 1366, 1649, 1777 |
| MbiI | CCGCTC | 1 cut(s) | 332 |
| MflI | RGATCY | 4 cut(s) | 46, 112, 488, 1870 |
| MhlI | GDGCHC | 1 cut(s) | 1067 |
| MluCI | AATT | 6 cut(s) | 734, 1120, 1295, 1421, 1894, 2119 |
| Mly113I | GGCGCC | 1 cut(s) | 1511 |
| MlyI | GAGTC | 2 cut(s) | 396, 1109 |
| MmeI | TCCRAC | 6 cut(s) | 156, 196, 218, 1357, 1678, 2279 |
| Mph1103I | ATGCAT | 2 cut(s) | 1233, 1828 |
| MroI | TCCGGA | 1 cut(s) | 2072 |
| MroNI | GCCGGC | 1 cut(s) | 652 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MseI | TTAA | 8 cut(s) | 32, 224, 438, 1214, 1284, 1587, 1641, 1893 |
| MslI | CAYNNNNRTG | 3 cut(s) | 584, 1607, 1682 |
| MspI | CCGG | 5 cut(s) | 635, 653, 782, 1991, 2073 |
| MspR9I | CCNGG | 6 cut(s) | 429, 783, 1082, 1515, 1560, 2265 |
| Mva1269I | GAATGC | 1 cut(s) | 749 |
| MvaI | CCWGG | 5 cut(s) | 429, 1082, 1515, 1560, 2265 |
| MvnI | CGCG | 4 cut(s) | 479, 1310, 2006, 2261 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 329, 338, 1217, 2010, 2144, 2153 |
| NaeI | GCCGGC | 1 cut(s) | 654 |
| NarI | GGCGCC | 1 cut(s) | 1511 |
| NciI | CCSGG | 1 cut(s) | 783 |
| NcoI | CCATGG | 2 cut(s) | 950, 1427 |
| NdeI | CATATG | 2 cut(s) | 64, 1766 |
| NgoMIV | GCCGGC | 1 cut(s) | 652 |
| NlaIV | GGNNCC | 4 cut(s) | 892, 1008, 1381, 1512 |
| NmuCI | GTSAC | 1 cut(s) | 1649 |
| NsiI | ATGCAT | 2 cut(s) | 1233, 1828 |
| NspI | RCATGY | 7 cut(s) | 238, 455, 1235, 1452, 1612, 1800, 1990 |
| OliI | CACNNNNGTG | 1 cut(s) | 584 |
| PaeI | GCATGC | 1 cut(s) | 1612 |
| PagI | TCATGA | 1 cut(s) | 801 |
| PciI | ACATGT | 1 cut(s) | 1796 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 504, 513, 812, 1371 |
| PctI | GAATGC | 1 cut(s) | 749 |
| PdiI | GCCGGC | 1 cut(s) | 654 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PfeI | GAWTC | 6 cut(s) | 8, 424, 658, 1772, 1860, 2064 |
| PfoI | TCCNGGA | 1 cut(s) | 1558 |
| PkrI | GCNGC | 4 cut(s) | 370, 640, 1210, 2022 |
| PleI | GAGTC | 2 cut(s) | 395, 1109 |
| PluTI | GGCGCC | 1 cut(s) | 1514 |
| PpsI | GAGTC | 2 cut(s) | 395, 1109 |
| Ppu21I | YACGTR | 2 cut(s) | 728, 2298 |
| PscI | ACATGT | 1 cut(s) | 1796 |
| PsiI | TTATAA | 2 cut(s) | 1982, 2000 |
| Psp124BI | GAGCTC | 1 cut(s) | 1067 |
| Psp1406I | AACGTT | 2 cut(s) | 548, 1374 |
| Psp6I | CCWGG | 5 cut(s) | 427, 1080, 1513, 1558, 2263 |
| PspFI | CCCAGC | 1 cut(s) | 1138 |
| PspGI | CCWGG | 5 cut(s) | 427, 1080, 1513, 1558, 2263 |
| PspN4I | GGNNCC | 4 cut(s) | 892, 1008, 1381, 1512 |
| PspPI | GGNCC | 6 cut(s) | 431, 708, 850, 891, 1157, 1850 |
| PsuI | RGATCY | 4 cut(s) | 46, 112, 488, 1870 |
| RsaI | GTAC | 9 cut(s) | 348, 730, 1008, 1034, 1094, 1305, 1328, 1453, 2093 |
| RsaNI | GTAC | 9 cut(s) | 347, 729, 1007, 1033, 1093, 1304, 1327, 1452, 2092 |
| RseI | CAYNNNNRTG | 3 cut(s) | 584, 1607, 1682 |
| SacI | GAGCTC | 1 cut(s) | 1067 |
| SaqAI | TTAA | 8 cut(s) | 32, 224, 438, 1214, 1284, 1587, 1641, 1893 |
| SatI | GCNGC | 4 cut(s) | 369, 639, 1209, 2021 |
| Sau96I | GGNCC | 6 cut(s) | 431, 708, 850, 891, 1157, 1850 |
| SchI | GAGTC | 2 cut(s) | 396, 1109 |
| ScrFI | CCNGG | 6 cut(s) | 429, 783, 1082, 1515, 1560, 2265 |
| SduI | GDGCHC | 1 cut(s) | 1067 |
| SfaNI | GCATC | 6 cut(s) | 270, 1813, 1835, 2007, 2134, 2273 |
| SfcI | CTRYAG | 1 cut(s) | 1917 |
| SfoI | GGCGCC | 1 cut(s) | 1512 |
| SinI | GGWCC | 3 cut(s) | 431, 708, 1850 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 584, 1607, 1682 |
| SmlI | CTYRAG | 1 cut(s) | 2192 |
| SmoI | CTYRAG | 1 cut(s) | 2192 |
| SnaBI | TACGTA | 1 cut(s) | 2298 |
| SphI | GCATGC | 1 cut(s) | 1612 |
| Sse9I | AATT | 6 cut(s) | 734, 1120, 1295, 1421, 1894, 2119 |
| SsiI | CCGC | 9 cut(s) | 330, 479, 638, 1209, 1494, 2021, 2025, 2259, 2288 |
| SspDI | GGCGCC | 1 cut(s) | 1510 |
| SspI | AATATT | 1 cut(s) | 612 |
| SspMI | CTAG | 3 cut(s) | 945, 1671, 1959 |
| SstI | GAGCTC | 1 cut(s) | 1067 |
| StyD4I | CCNGG | 6 cut(s) | 427, 781, 1080, 1513, 1558, 2263 |
| StyI | CCWWGG | 3 cut(s) | 397, 950, 1427 |
| TaaI | ACNGT | 4 cut(s) | 190, 517, 1196, 1456 |
| TaiI | ACGT | 8 cut(s) | 422, 510, 551, 730, 809, 1377, 1628, 2300 |
| TaqI | TCGA | 4 cut(s) | 1026, 1061, 1076, 2015 |
| TasI | AATT | 6 cut(s) | 734, 1120, 1295, 1421, 1894, 2119 |
| TatI | WGTACW | 3 cut(s) | 1032, 1092, 1303 |
| TauI | GCSGC | 3 cut(s) | 641, 1211, 2023 |
| TfiI | GAWTC | 6 cut(s) | 8, 424, 658, 1772, 1860, 2064 |
| Tru1I | TTAA | 8 cut(s) | 32, 224, 438, 1214, 1284, 1587, 1641, 1893 |
| Tru9I | TTAA | 8 cut(s) | 32, 224, 438, 1214, 1284, 1587, 1641, 1893 |
| TscAI | CASTG | 1 cut(s) | 193 |
| TseFI | GTSAC | 1 cut(s) | 1649 |
| TseI | GCWGC | 1 cut(s) | 368 |
| Tsp45I | GTSAC | 1 cut(s) | 1649 |
| TspDTI | ATGAA | 8 cut(s) | 69, 75, 117, 201, 551, 553, 1672, 1673 |
| TspGWI | ACGGA | 4 cut(s) | 423, 721, 1263, 1879 |
| TspRI | CASTG | 1 cut(s) | 193 |
| VpaK11BI | GGWCC | 3 cut(s) | 431, 708, 1850 |
| XceI | RCATGY | 7 cut(s) | 238, 455, 1235, 1452, 1612, 1800, 1990 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1017 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| XspI | CTAG | 3 cut(s) | 945, 1671, 1959 |
| ZraI | GACGTC | 1 cut(s) | 807 |
| Zsp2I | ATGCAT | 2 cut(s) | 1233, 1828 |