Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437885.1

Orthogroup ID

OG0001550

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1424

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 929 bp

ccgcgaccatatttacatgccattattacaacgaccaattgcaattgcaatggtggggggtcttgcttgcttgtggtctagccttgtttttcactctacctgttggagtcatttatgccacaaccaatcagatgccaactttgaatgtgattacagagtacataattgggtatctgtatccgggatatccagctgctaacatattattcaaagtatatggacacataagcatgaaacaaggaatcaattttctcgaagacttcaagcttggacactacatgaagattgctcctcgagcaatgttcatggcacaggtagttggtactatcatagcagcacttgtgcatttgggaactgcatggtggcttatgagcacaatccctgacatatgcgacagggcgttactaccagcagagagcccatggacttgccccggtgaccatgtcttctacgatgcttctgttatctggggccttgtcgggcctcgcagaatctttggggaccttggctactattcggctatcaactggtttttcttagctggggctatagctcctgcccttgtttggcttgcacacaagaccttcccaaccaaacaatggattagacttattacaatgcctgtgctcttagggacagtagtcaacatgcctccagctactgctgtgaatttcactagctggatcctcattggattcgcctcaggctttgttgcttacaggtactaccgcggctggtggagccgtcataactatgtgctatctggagctctggatgctggattagcctttatggcggtaattttgtacttgtgtctagggatgcaacatgtccacttaaaatggtggggaagtacgccggatggttgcccgttggcttcttgctcaacggagccaggtgttctgattaagggctgtccattgatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

308

Amino Acids

34.36

Weight (kDa)

8.39

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10770 AT4G10770
fragaria_vesca	FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_1g11690 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060 FvH4_5g11060
malus_domestica	MD02G1129900.v1.1 MD06G1116800.v1.1 MD14G1124200.v1.1
prunus_persica	Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.5G128100_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1 Prupe.7G169800_v2.0.a1
pyrus_communis	pycom02g10180 pycom06g10890 pycom14g11000
rosa_chinensis	RchiOBHm_Chr2g0099261 RchiOBHm_Chr7g0186741
rosa_laevigata	RLG00000004820 RLG00000016866
rosa_multiflora	Rmu_co8201022.1_g000001 Rmu_co8437885.1_g000001 Rmu_co8448977.1_g000001 Rmu_sc0009734.1_g000005
rosa_roxburghii	Rroxscaffold_2G00143270 Rroxscaffold_3G00267870
rosa_rugosa	Rorug02G0078300 Rorug02G0078300 Rorug02G0078300 Rorug06G0476200 Rorug06G0476300
rosa_samantha	Rh2AG127500 Rh2BG130500 Rh2CG131700 Rh2DG132100 Rh7AG064300 Rh7BG080800 Rh7CG083200 Rh7DG084100
rosa_wichuraiana	Rw2G009840 Rw7G007210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccII	CGCG	2 cut(s)	4, 731
AciI	CCGC	4 cut(s)	2, 729, 731, 796
AclWI	GGATC	2 cut(s)	678, 691
AcsI	RAATTY	1 cut(s)	669
AfaI	GTAC	5 cut(s)	160, 324, 724, 808, 855
AfiI	CCNNNNNNNGG	2 cut(s)	566, 599
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	3 cut(s)	144, 210, 264
AjnI	CCWGG	1 cut(s)	894
AluBI	AGCT	7 cut(s)	193, 267, 541, 553, 658, 680, 769
AluI	AGCT	7 cut(s)	193, 267, 541, 553, 658, 680, 769
Alw21I	GWGCWC	3 cut(s)	376, 629, 771
AlwI	GGATC	2 cut(s)	678, 691
AlwNI	CAGNNNCTG	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	471, 481
ApeKI	GCWGC	2 cut(s)	193, 334
ApoI	RAATTY	1 cut(s)	669
AspS9I	GGNCC	3 cut(s)	471, 481, 501
AsuC2I	CCSGG	2 cut(s)	182, 434
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	501
AxyI	CCTNAGG	1 cut(s)	702
BamHI	GGATCC	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	421, 771
BbsI	GAAGAC	2 cut(s)	263, 438
Bbv12I	GWGCWC	3 cut(s)	376, 629, 771
BbvI	GCAGC	2 cut(s)	180, 346
BccI	CCATC	1 cut(s)	856
BceAI	ACGGC	1 cut(s)	728
BciT130I	CCWGG	1 cut(s)	896
BciVI	GTATCC	1 cut(s)	188
BcnI	CCSGG	2 cut(s)	182, 434
BfaI	CTAG	3 cut(s)	79, 677, 817
BfmI	CTRYAG	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	793
BisI	GCNGC	3 cut(s)	194, 335, 732
BlsI	GCNGC	3 cut(s)	195, 336, 733
Bme1390I	CCNGG	3 cut(s)	182, 434, 896
Bme18I	GGWCC	1 cut(s)	501
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	471, 481, 501
BmiI	GGNNCC	5 cut(s)	472, 502, 685, 742, 893
BmrFI	CCNGG	3 cut(s)	182, 434, 896
BmsI	GCATC	4 cut(s)	122, 444, 765, 812
BoxI	GACNNNNGTC	1 cut(s)	640
BpiI	GAAGAC	2 cut(s)	263, 438
BpmI	CTGGAG	2 cut(s)	638, 785
BpuMI	CCSGG	2 cut(s)	182, 434
BsaJI	CCNNGG	4 cut(s)	421, 432, 504, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 599
Bse1I	ACTGG	1 cut(s)	532
Bse21I	CCTNAGG	1 cut(s)	702
Bse3DI	GCAATG	2 cut(s)	55, 305
BseBI	CCWGG	1 cut(s)	896
BseDI	CCNNGG	4 cut(s)	421, 432, 504, 729
BseGI	GGATG	3 cut(s)	780, 827, 867
BseLI	CCNNNNNNNGG	2 cut(s)	566, 599
BseMI	GCAATG	2 cut(s)	55, 305
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	180, 346
BseYI	CCCAGC	1 cut(s)	541
Bsh1236I	CGCG	2 cut(s)	4, 731
BshFI	GGCC	2 cut(s)	473, 483
BsiHKAI	GWGCWC	3 cut(s)	376, 629, 771
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	181, 434, 859
BslFI	GGGAC	2 cut(s)	514, 648
BslI	CCNNNNNNNGG	2 cut(s)	566, 599
BsmFI	GGGAC	2 cut(s)	514, 648
BsnI	GGCC	2 cut(s)	473, 483
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	4 cut(s)	376, 421, 629, 771
Bsp143I	GATC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	4 cut(s)	2, 729, 731, 796
BspANI	GGCC	2 cut(s)	473, 483
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	2 cut(s)	4, 731
BspLI	GGNNCC	5 cut(s)	472, 502, 685, 742, 893
BspPI	GGATC	2 cut(s)	678, 691
BsrDI	GCAATG	2 cut(s)	55, 305
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	4 cut(s)	421, 432, 504, 729
BssMI	GATC	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	421, 504
Bst2UI	CCWGG	1 cut(s)	896
Bst4CI	ACNGT	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	68, 572
BstDEI	CTNAG	3 cut(s)	537, 630, 702
BstDSI	CCRYGG	2 cut(s)	421, 729
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	3 cut(s)	780, 827, 867
BstFNI	CGCG	2 cut(s)	4, 731
BstKTI	GATC	1 cut(s)	686
BstMBI	GATC	1 cut(s)	683
BstMWI	GCNNNNNNNGC	5 cut(s)	295, 740, 775, 784, 793
BstNI	CCWGG	1 cut(s)	896
BstNSI	RCATGY	3 cut(s)	20, 651, 832
BstPAI	GACNNNNGTC	1 cut(s)	640
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	180, 432, 894
BstSFI	CTRYAG	1 cut(s)	548
BstUI	CGCG	2 cut(s)	4, 731
BstV1I	GCAGC	2 cut(s)	180, 346
BstV2I	GAAGAC	2 cut(s)	263, 438
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
Bsu36I	CCTNAGG	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	473, 483
BtgI	CCRYGG	2 cut(s)	421, 729
BtsCI	GGATG	3 cut(s)	780, 827, 867
Cac8I	GCNNGC	2 cut(s)	68, 572
CaiI	CAGNNNCTG	1 cut(s)	661
Cfr13I	GGNCC	3 cut(s)	471, 481, 501
Cfr42I	CCGCGG	1 cut(s)	732
Csp6I	GTAC	5 cut(s)	159, 323, 723, 807, 854
CviAII	CATG	9 cut(s)	17, 231, 279, 306, 359, 422, 442, 648, 829
CviQI	GTAC	5 cut(s)	159, 323, 723, 807, 854
DdeI	CTNAG	3 cut(s)	537, 630, 702
DpnI	GATC	1 cut(s)	685
DpnII	GATC	1 cut(s)	683
Ecl136II	GAGCTC	1 cut(s)	769
Eco130I	CCWWGG	2 cut(s)	421, 504
Eco24I	GRGCYC	2 cut(s)	421, 771
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	501
Eco53kI	GAGCTC	1 cut(s)	769
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	769
EcoO109I	RGGNCCY	2 cut(s)	471, 501
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	894
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	421, 504
EcoT38I	GRGCYC	2 cut(s)	421, 771
ErhI	CCWWGG	2 cut(s)	421, 504
FaeI	CATG	9 cut(s)	20, 234, 282, 309, 362, 425, 445, 651, 832
FaqI	GGGAC	2 cut(s)	514, 648
FatI	CATG	9 cut(s)	16, 230, 278, 305, 358, 421, 441, 647, 828
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	3 cut(s)	194, 335, 732
FokI	GGATG	3 cut(s)	787, 834, 874
FriOI	GRGCYC	2 cut(s)	421, 771
Fsp4HI	GCNGC	3 cut(s)	194, 335, 732
FspBI	CTAG	3 cut(s)	79, 677, 817
GluI	GCNGC	3 cut(s)	194, 335, 732
GsaI	CCCAGC	1 cut(s)	545
GsuI	CTGGAG	2 cut(s)	638, 785
HaeIII	GGCC	2 cut(s)	473, 483
HapII	CCGG	3 cut(s)	181, 434, 859
Hin1II	CATG	9 cut(s)	20, 234, 282, 309, 362, 425, 445, 651, 832
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	4 cut(s)	107, 242, 491, 695
HpaII	CCGG	3 cut(s)	181, 434, 859
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	2 cut(s)	645, 834
Hpy188I	TCNGA	2 cut(s)	131, 905
Hpy188III	TCNNGA	3 cut(s)	253, 764, 772
Hpy8I	GTNNAC	2 cut(s)	645, 834
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4V	TGCA	6 cut(s)	42, 48, 345, 358, 574, 825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	295, 740, 775, 784, 793
HpyF3I	CTNAG	3 cut(s)	537, 630, 702
Hsp92II	CATG	9 cut(s)	20, 234, 282, 309, 362, 425, 445, 651, 832
KspI	CCGCGG	1 cut(s)	732
Kzo9I	GATC	1 cut(s)	683
LmnI	GCTCC	5 cut(s)	294, 558, 740, 766, 891
Lsp1109I	GCAGC	2 cut(s)	180, 346
LweI	GCATC	4 cut(s)	122, 444, 765, 812
MaeI	CTAG	3 cut(s)	79, 677, 817
MaeIII	GTNAC	2 cut(s)	401, 436
MalI	GATC	1 cut(s)	685
MboI	GATC	1 cut(s)	683
MboII	GAAGA	3 cut(s)	268, 294, 438
MfeI	CAATTG	2 cut(s)	37, 43
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	4 cut(s)	376, 421, 629, 771
MluCI	AATT	6 cut(s)	37, 43, 164, 246, 669, 800
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	302, 494, 662, 697, 711
MseI	TTAA	2 cut(s)	838, 908
MslI	CAYNNNNRTG	3 cut(s)	229, 752, 924
MspA1I	CMGCKG	2 cut(s)	193, 731
MspI	CCGG	3 cut(s)	181, 434, 859
MspR9I	CCNGG	3 cut(s)	182, 434, 896
MunI	CAATTG	2 cut(s)	37, 43
MvaI	CCWGG	1 cut(s)	896
MvnI	CGCG	2 cut(s)	4, 731
MwoI	GCNNNNNNNGC	5 cut(s)	295, 740, 775, 784, 793
NciI	CCSGG	2 cut(s)	182, 434
NcoI	CCATGG	1 cut(s)	421
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	1 cut(s)	683
NlaIII	CATG	9 cut(s)	20, 234, 282, 309, 362, 425, 445, 651, 832
NlaIV	GGNNCC	5 cut(s)	472, 502, 685, 742, 893
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	3 cut(s)	20, 651, 832
PaeR7I	CTCGAG	1 cut(s)	293
PciI	ACATGT	1 cut(s)	828
PfeI	GAWTC	3 cut(s)	242, 491, 695
PflFI	GACNNNGTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	599
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	195, 336, 733
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	501
PscI	ACATGT	1 cut(s)	828
PshAI	GACNNNNGTC	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	894
PspEI	GGTNACC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	894
PspN4I	GGNNCC	5 cut(s)	472, 502, 685, 742, 893
PspPI	GGNCC	3 cut(s)	471, 481, 501
PspPPI	RGGWCCY	1 cut(s)	501
PspXI	VCTCGAGB	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	683
PsyI	GACNNNGTC	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	5 cut(s)	160, 324, 724, 808, 855
RsaNI	GTAC	5 cut(s)	159, 323, 723, 807, 854
RseI	CAYNNNNRTG	3 cut(s)	229, 752, 924
SacI	GAGCTC	1 cut(s)	771
SacII	CCGCGG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	838, 908
SatI	GCNGC	3 cut(s)	194, 335, 732
Sau3AI	GATC	1 cut(s)	683
Sau96I	GGNCC	3 cut(s)	471, 481, 501
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	182, 434, 896
SduI	GDGCHC	4 cut(s)	376, 421, 629, 771
SfaNI	GCATC	4 cut(s)	122, 444, 765, 812
SfcI	CTRYAG	1 cut(s)	548
Sfr274I	CTCGAG	1 cut(s)	293
Sfr303I	CCGCGG	1 cut(s)	732
SgrBI	CCGCGG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	3 cut(s)	229, 752, 924
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	6 cut(s)	37, 43, 164, 246, 669, 800
SsiI	CCGC	4 cut(s)	2, 729, 731, 796
SspMI	CTAG	3 cut(s)	79, 677, 817
SstI	GAGCTC	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	180, 432, 894
StyI	CCWWGG	2 cut(s)	421, 504
TaaI	ACNGT	1 cut(s)	639
TaqI	TCGA	2 cut(s)	254, 294
TasI	AATT	6 cut(s)	37, 43, 164, 246, 669, 800
TatI	WGTACW	2 cut(s)	158, 806
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	3 cut(s)	242, 491, 695
Tru1I	TTAA	2 cut(s)	838, 908
Tru9I	TTAA	2 cut(s)	838, 908
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	193, 334
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	247, 294, 295
TspGWI	ACGGA	1 cut(s)	904
Tth111I	GACNNNGTC	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	501
XapI	RAATTY	1 cut(s)	669
XceI	RCATGY	3 cut(s)	20, 651, 832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	3 cut(s)	79, 677, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.