Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029692.1

Orthogroup ID

OG0003876

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2847

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029692.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1586 bp

ccatctgggttcaggcagtcagtggcaacaattacacattctcgaactattctcatgctctgaagaccctcatggcgcttacacagcttcaactcaacaatttatctgtcgccaaagatatcggcaaggcctttgggctgctctccggcatggcttcagattgtttgtcgacttctacaattctcatgatcggatcacttgagggtcttattggatatggagttcaatggctggttgttagtgagagaatcagccctcttccatattggcagatgtgcatatttttgtgcatggggggcaacagcacaacatggatgaacactgcagtgctagtaacttgcatgagaaatttcacaaaaaaccgaggtccagtttcaggcatctgcaagggttatgtaggattaagcacagcaatcttcacagacttgtgcacttctctattctcctcaagcccctccaaatttcttctcatgcttgctatagtccctgccattatctgcatagcggcgtgcatattcctccaagaaaccccacccgcttcgagtccatcagaggaaaaacaagaagcagaggtcctcaacatcttcaatatcctcgccattgttgtagccgtctatcttttgacctttgacatcactgaaccacatggtcatgttttatctttggcatttgcaataggactaattttcttgctagctatgcctttgggtgtgcctttgtacacttttctttacacatccagatctaatagttttgatatagagcataaaacacttgaggatcccctcgttgttcaaaaagcacttttggaaaagtctgaggaattagcaggagttaaggtggcagattttgaagaatcaaagcaaagaccatcgattggggacgatcataacatagtccaaatggtgcaaacatttgatttttggatactgtttgggtcctttctctgtggcacaggcactgcaatgtgtgtcatgaacaacatggcgcagatggggctggcactcggctactcaaaggtatctattttcatctcacttcttagcatttggggctttttcgggcgtatagtctccggcctgatctctgaatactacattgggaaacatgccatgcctaggccattttggaatgcaattgctgagatcctaatggcactaggatacctagccatggctctagccatgcctggatctctctacattggctcaatttttgtgggtatgggctatgggttccttctcactataacagtcccagtggcctcagagctatttggtctcaaatactatggtcttttgtacaacattctgatcctcaaccttcctttgggttcttttctcttctccggtttacttgctggttatctctatgatgctgaagctacaaaaaccagtgaagggggcagcacttgtgtcgggtcacattgttaccggcttgtgaacttgatcatggcccttgcttctgttttgggactcgtactggatgtgttgttggcctttagaacaaagaaagtgtacaccaagatttacgagagcaagaaaaagaagaagatcatgggatttgcagtatcagcaagatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

527

Amino Acids

57.54

Weight (kDa)

7.59

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16660 AT2G16660 AT4G34950
fragaria_vesca	FvH4_1g11700 FvH4_2g01480
malus_domestica	MD02G1130000.v1.1 MD05G1119300.v1.1 MD10G1122400.v1.1
prunus_persica	Prupe.7G169700_v2.0.a1 Prupe.8G163500_v2.0.a1
pyrus_communis	pycom02g10190 pycom05g11320 pycom05g11330 pycom10g10530
rosa_chinensis	RchiOBHm_Chr2g0099271 RchiOBHm_Chr6g0244111
rosa_laevigata	RLG00000015380 RLG00000016867
rosa_multiflora	Rmu_sc0001455.1_g000032 Rmu_sc0029692.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143260 Rroxscaffold_7G00216060
rosa_rugosa	Rorug02G0078300 Rorug05G0507500
rosa_samantha	Rh2AG127600 Rh2BG130600 Rh2CG131800 Rh2DG132300 Rh6AG022000 Rh6BG017700 Rh6CG014400 Rh6DG015600
rosa_wichuraiana	Rw2G009850 Rw6G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	2 cut(s)	505, 536
AclWI	GGATC	6 cut(s)	201, 775, 788, 1140, 1200, 1308
AcsI	RAATTY	2 cut(s)	348, 460
AcuI	CTGAAG	3 cut(s)	82, 140, 1400
AfaI	GTAC	4 cut(s)	721, 1303, 1481, 1519
AfiI	CCNNNNNNNGG	6 cut(s)	376, 877, 1118, 1173, 1329, 1400
AgsI	TTSAA	5 cut(s)	91, 226, 588, 796, 853
AjnI	CCWGG	1 cut(s)	1188
AjuI	GAANNNNNNNTTGG	2 cut(s)	1082, 1114
AleI	CACNNNNGTG	1 cut(s)	325
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	87, 697, 1272, 1384
AluI	AGCT	4 cut(s)	87, 697, 1272, 1384
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	1077, 1285
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	6 cut(s)	201, 775, 788, 1140, 1200, 1308
AlwNI	CAGNNNCTG	1 cut(s)	961
AoxI	GGCC	6 cut(s)	128, 1077, 1120, 1262, 1454, 1496
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	138, 1406
ApoI	RAATTY	2 cut(s)	348, 460
AspA2I	CCTAGG	1 cut(s)	1117
AspLEI	GCGC	2 cut(s)	78, 990
AspS9I	GGNCC	4 cut(s)	367, 573, 938, 1455
AsuNHI	GCTAGC	1 cut(s)	693
AvaII	GGWCC	3 cut(s)	367, 573, 938
AvrII	CCTAGG	1 cut(s)	1117
BaeGI	GKGCMC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	780
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	125, 1418
BccI	CCATC	4 cut(s)	10, 555, 879, 987
BceAI	ACGGC	1 cut(s)	595
BcgI	CGANNNNNNTGC	2 cut(s)	1398, 1432
BciT130I	CCWGG	1 cut(s)	1190
BciVI	GTATCC	2 cut(s)	920, 1156
BclI	TGATCA	1 cut(s)	1448
BcoDI	GTCTC	2 cut(s)	1077, 1285
BfaI	CTAG	6 cut(s)	331, 694, 1118, 1159, 1168, 1180
BfmI	CTRYAG	2 cut(s)	323, 479
BfoI	RGCGCY	1 cut(s)	79
BfuI	GTATCC	2 cut(s)	920, 1156
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	3 cut(s)	139, 506, 1407
BlnI	CCTAGG	1 cut(s)	1117
BlsI	GCNGC	3 cut(s)	140, 507, 1408
Bme1390I	CCNGG	1 cut(s)	1190
Bme18I	GGWCC	3 cut(s)	367, 573, 938
BmgT120I	GGNCC	4 cut(s)	367, 573, 938, 1455
BmiI	GGNNCC	3 cut(s)	782, 939, 1237
BmrFI	CCNGG	1 cut(s)	1190
BmrI	ACTGGG	1 cut(s)	1252
BmsI	GCATC	2 cut(s)	389, 1365
BmtI	GCTAGC	1 cut(s)	697
BmuI	ACTGGG	1 cut(s)	1252
BpiI	GAAGAC	1 cut(s)	70
BpuEI	CTTGAG	3 cut(s)	220, 432, 796
Bsa29I	ATCGAT	1 cut(s)	874
BsaI	GGTCTC	1 cut(s)	1285
BsaJI	CCNNGG	3 cut(s)	363, 1117, 1172
BsaWI	WCCGGW	1 cut(s)	1348
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	6 cut(s)	376, 877, 1118, 1173, 1329, 1400
Bse118I	RCCGGY	1 cut(s)	1433
Bse1I	ACTGG	4 cut(s)	370, 1258, 1394, 1487
Bse3DI	GCAATG	1 cut(s)	971
BseBI	CCWGG	1 cut(s)	1190
BseCI	ATCGAT	1 cut(s)	874
BseDI	CCNNGG	3 cut(s)	363, 1117, 1172
BseGI	GGATG	3 cut(s)	320, 736, 1491
BseLI	CCNNNNNNNGG	6 cut(s)	376, 877, 1118, 1173, 1329, 1400
BseMI	GCAATG	1 cut(s)	971
BseMII	CTCAG	3 cut(s)	809, 1133, 1280
BseNI	ACTGG	4 cut(s)	370, 1258, 1394, 1487
BseRI	GAGGAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	125, 1418
BshFI	GGCC	6 cut(s)	130, 1079, 1122, 1264, 1456, 1498
BshVI	ATCGAT	1 cut(s)	874
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	146, 1076, 1349, 1434
BslFI	GGGAC	4 cut(s)	469, 895, 1240, 1487
BslI	CCNNNNNNNGG	6 cut(s)	376, 877, 1118, 1173, 1329, 1400
BsmAI	GTCTC	2 cut(s)	1077, 1285
BsmFI	GGGAC	4 cut(s)	469, 895, 1240, 1487
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	6 cut(s)	130, 1079, 1122, 1264, 1456, 1498
Bso31I	GGTCTC	1 cut(s)	1285
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp1407I	TGTACA	3 cut(s)	719, 1301, 1517
Bsp19I	CCATGG	1 cut(s)	1172
BspACI	CCGC	2 cut(s)	505, 536
BspANI	GGCC	6 cut(s)	130, 1079, 1122, 1264, 1456, 1498
BspCNI	CTCAG	3 cut(s)	810, 1134, 1279
BspDI	ATCGAT	1 cut(s)	874
BspHI	TCATGA	2 cut(s)	185, 974
BspLI	GGNNCC	3 cut(s)	782, 939, 1237
BspMAI	CTGCAG	1 cut(s)	327
BspOI	GCTAGC	1 cut(s)	697
BspPI	GGATC	6 cut(s)	201, 775, 788, 1140, 1200, 1308
BspTNI	GGTCTC	1 cut(s)	1285
BsrDI	GCAATG	1 cut(s)	971
BsrFI	RCCGGY	1 cut(s)	1433
BsrGI	TGTACA	3 cut(s)	719, 1301, 1517
BsrI	ACTGG	4 cut(s)	370, 1258, 1394, 1487
BssAI	RCCGGY	1 cut(s)	1433
BssECI	CCNNGG	3 cut(s)	363, 1117, 1172
BssT1I	CCWWGG	2 cut(s)	1117, 1172
Bst2UI	CCWGG	1 cut(s)	1190
Bst4CI	ACNGT	2 cut(s)	932, 1254
Bst6I	CTCTTC	2 cut(s)	263, 1348
BstAUI	TGTACA	3 cut(s)	719, 1301, 1517
BstC8I	GCNNGC	4 cut(s)	476, 510, 695, 1001
BstDEI	CTNAG	4 cut(s)	818, 1042, 1142, 1266
BstDSI	CCRYGG	1 cut(s)	1172
BstF5I	GGATG	3 cut(s)	320, 736, 1491
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 990
BstMAI	GTCTC	2 cut(s)	1077, 1285
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 296, 699, 996, 1052, 1573
BstNI	CCWGG	1 cut(s)	1190
BstNSI	RCATGY	1 cut(s)	1111
BstSCI	CCNGG	1 cut(s)	1188
BstSFI	CTRYAG	2 cut(s)	323, 479
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	125, 1418
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	4 cut(s)	742, 780, 1145, 1192
BstYI	RGATCY	4 cut(s)	742, 780, 1145, 1192
Bsu15I	ATCGAT	1 cut(s)	874
BsuI	GTATCC	2 cut(s)	920, 1156
BsuRI	GGCC	6 cut(s)	130, 1079, 1122, 1264, 1456, 1498
BsuTUI	ATCGAT	1 cut(s)	874
BtgI	CCRYGG	1 cut(s)	1172
BtsCI	GGATG	3 cut(s)	320, 736, 1491
BtsI	GCAGTG	3 cut(s)	320, 332, 959
BtsIMutI	CAGTG	7 cut(s)	27, 320, 332, 635, 959, 1265, 1401
Cac8I	GCNNGC	4 cut(s)	476, 510, 695, 1001
CaiI	CAGNNNCTG	1 cut(s)	961
CciI	TCATGA	2 cut(s)	185, 974
CfoI	GCGC	2 cut(s)	78, 990
Cfr10I	RCCGGY	1 cut(s)	1433
Cfr13I	GGNCC	4 cut(s)	367, 573, 938, 1455
ClaI	ATCGAT	1 cut(s)	874
Csp6I	GTAC	4 cut(s)	720, 1302, 1480, 1518
CspCI	CAANNNNNGTGG	2 cut(s)	1199, 1234
CviQI	GTAC	4 cut(s)	720, 1302, 1480, 1518
DdeI	CTNAG	4 cut(s)	818, 1042, 1142, 1266
Eam1104I	CTCTTC	2 cut(s)	263, 1348
EarI	CTCTTC	2 cut(s)	263, 1348
Eco130I	CCWWGG	2 cut(s)	1117, 1172
Eco147I	AGGCCT	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	1285
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	367, 573, 938
Eco57I	CTGAAG	3 cut(s)	82, 140, 1400
EcoO109I	RGGNCCY	2 cut(s)	573, 938
EcoRII	CCWGG	1 cut(s)	1188
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	1117, 1172
ErhI	CCWWGG	2 cut(s)	1117, 1172
FaqI	GGGAC	4 cut(s)	469, 895, 1240, 1487
FauI	CCCGC	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	1448
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	139, 506, 1407
FokI	GGATG	3 cut(s)	327, 723, 1498
Fsp4HI	GCNGC	3 cut(s)	139, 506, 1407
FspBI	CTAG	6 cut(s)	331, 694, 1118, 1159, 1168, 1180
GlaI	GCGC	2 cut(s)	77, 989
GluI	GCNGC	3 cut(s)	139, 506, 1407
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	6 cut(s)	130, 1079, 1122, 1264, 1456, 1498
HapII	CCGG	4 cut(s)	146, 1076, 1349, 1434
HhaI	GCGC	2 cut(s)	78, 990
Hin6I	GCGC	2 cut(s)	76, 988
HinP1I	GCGC	2 cut(s)	76, 988
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	4 cut(s)	248, 543, 856, 1475
HpaII	CCGG	4 cut(s)	146, 1076, 1349, 1434
Hpy166II	GTNNAC	7 cut(s)	170, 431, 722, 1354, 1443, 1518, 1520
Hpy188I	TCNGA	8 cut(s)	62, 159, 193, 552, 819, 1089, 1269, 1313
Hpy188III	TCNNGA	4 cut(s)	42, 186, 740, 975
Hpy8I	GTNNAC	7 cut(s)	170, 431, 722, 1354, 1443, 1518, 1520
HpyAV	CCTTC	3 cut(s)	1249, 1333, 1393
HpyCH4III	ACNGT	2 cut(s)	932, 1254
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 296, 699, 996, 1052, 1573
HpyF3I	CTNAG	4 cut(s)	818, 1042, 1142, 1266
HspAI	GCGC	2 cut(s)	76, 988
Ksp22I	TGATCA	1 cut(s)	1448
Lsp1109I	GCAGC	2 cut(s)	125, 1418
LweI	GCATC	2 cut(s)	389, 1365
MaeI	CTAG	6 cut(s)	331, 694, 1118, 1159, 1168, 1180
MaeIII	GTNAC	3 cut(s)	333, 1421, 1429
MboII	GAAGA	9 cut(s)	75, 250, 408, 457, 576, 865, 1335, 1560, 1563
MfeI	CAATTG	1 cut(s)	1136
MflI	RGATCY	4 cut(s)	742, 780, 1145, 1192
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	9 cut(s)	30, 99, 179, 348, 460, 683, 823, 1136, 1211
MlyI	GAGTC	2 cut(s)	552, 1469
MseI	TTAA	2 cut(s)	403, 836
MslI	CAYNNNNRTG	3 cut(s)	325, 650, 964
MspI	CCGG	4 cut(s)	146, 1076, 1349, 1434
MspR9I	CCNGG	1 cut(s)	1190
MunI	CAATTG	1 cut(s)	1136
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	6 cut(s)	84, 296, 699, 996, 1052, 1573
NcoI	CCATGG	1 cut(s)	1172
NheI	GCTAGC	1 cut(s)	693
NlaIV	GGNNCC	3 cut(s)	782, 939, 1237
NmeAIII	GCCGAG	1 cut(s)	986
NmuCI	GTSAC	1 cut(s)	1421
NspI	RCATGY	1 cut(s)	1111
OliI	CACNNNNGTG	1 cut(s)	325
PagI	TCATGA	2 cut(s)	185, 974
PceI	AGGCCT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	1137
PfeI	GAWTC	2 cut(s)	248, 856
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	3 cut(s)	140, 507, 1408
PleI	GAGTC	2 cut(s)	551, 1469
PpsI	GAGTC	2 cut(s)	551, 1469
PpuMI	RGGWCCY	2 cut(s)	573, 938
Psp5II	RGGWCCY	2 cut(s)	573, 938
Psp6I	CCWGG	1 cut(s)	1188
PspGI	CCWGG	1 cut(s)	1188
PspN4I	GGNNCC	3 cut(s)	782, 939, 1237
PspPI	GGNCC	4 cut(s)	367, 573, 938, 1455
PspPPI	RGGWCCY	2 cut(s)	573, 938
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	961
PsuI	RGATCY	4 cut(s)	742, 780, 1145, 1192
RsaI	GTAC	4 cut(s)	721, 1303, 1481, 1519
RsaNI	GTAC	4 cut(s)	720, 1302, 1480, 1518
RseI	CAYNNNNRTG	3 cut(s)	325, 650, 964
SalI	GTCGAC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	403, 836
SatI	GCNGC	3 cut(s)	139, 506, 1407
Sau96I	GGNCC	4 cut(s)	367, 573, 938, 1455
SchI	GAGTC	2 cut(s)	552, 1469
ScrFI	CCNGG	1 cut(s)	1190
SduI	GDGCHC	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	389, 1365
SfcI	CTRYAG	2 cut(s)	323, 479
SinI	GGWCC	3 cut(s)	367, 573, 938
SmiMI	CAYNNNNRTG	3 cut(s)	325, 650, 964
SmlI	CTYRAG	3 cut(s)	199, 447, 775
SmoI	CTYRAG	3 cut(s)	199, 447, 775
Sse9I	AATT	9 cut(s)	30, 99, 179, 348, 460, 683, 823, 1136, 1211
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	505, 536
SspMI	CTAG	6 cut(s)	331, 694, 1118, 1159, 1168, 1180
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	1188
StyI	CCWWGG	2 cut(s)	1117, 1172
TaaI	ACNGT	2 cut(s)	932, 1254
TaqI	TCGA	4 cut(s)	43, 169, 541, 874
TasI	AATT	9 cut(s)	30, 99, 179, 348, 460, 683, 823, 1136, 1211
TatI	WGTACW	3 cut(s)	719, 1301, 1517
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	248, 856
Tru1I	TTAA	2 cut(s)	403, 836
Tru9I	TTAA	2 cut(s)	403, 836
TscAI	CASTG	7 cut(s)	27, 327, 332, 642, 966, 1265, 1401
TseFI	GTSAC	1 cut(s)	1421
TseI	GCWGC	2 cut(s)	138, 1406
Tsp45I	GTSAC	1 cut(s)	1421
TspDTI	ATGAA	3 cut(s)	331, 991, 1020
TspRI	CASTG	7 cut(s)	27, 327, 332, 642, 966, 1265, 1401
Van91I	CCANNNNNTGG	1 cut(s)	877
VneI	GTGCAC	1 cut(s)	429
VpaK11BI	GGWCC	3 cut(s)	367, 573, 938
XapI	RAATTY	2 cut(s)	348, 460
XceI	RCATGY	1 cut(s)	1111
XmaJI	CCTAGG	1 cut(s)	1117
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	6 cut(s)	331, 694, 1118, 1159, 1168, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.