Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003876

Physical Location & Seq

Genomic Coordinates Reverse (-)

66757721 .. 66761277

Gene Structure 3557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGGGTTTTGGTTTGGAGCGACCATCAGCCATCAAATGGCTTGGTTTCGTCACCGCCATTTGGGTCCAGTCCATTTCAGGCAACAACTACACTTTCTCCAACTACTCCGATGCTCTCAAAACCCTCATGAACCTCACTCAGCTCGAGCTCAACAACCTCTCCGTCGCCAAAGACGTCGGTAAAGCTTTCGGCCTCCTCGCGGGCCTCGCTTCCGACCGCTTCCCCACCTGGGTCCTCCTCCTCATCGGCTCCGTCGAGGGCTTGGTCGGTTACGGCGCCCAGTGGCTCGTCGTCAGCCAAAAAATCCAACCCCTTTCGTACTGGCAGATGTGTATATTTTTGTGCATGGGAGGCAACAGCACCACGTGGATGAACACGGCCGTATTAGTGACGTGTATTCGGAACTTCCGGAGCAACCGAGGACCGGTCTCCGGCATTCTCAAAGGCTACGTAGGTCTGAGCACCGCCATATTCACTGACCTCTGCACCGCTCTGTTTAACGACAACTCGGCCAGTTTCCTGCTCATGCTCGCCGTCACTCCCTTCGCCGTCTGCCTCACCGCCATGATCTTCCTCCGCGAAATCCCTCCGTCGTCCTCCTCCGCCGAGGACAAGCAGGAGTCCAGATACTTCTGGTTCTTCAACGGCCTCGCCTTCTTCGTCGCCCTCTACCTCCTGGCTTACGACTTCATTCCGGACCCCTCCACGTTCTTCTCTTACGTCTTCTCCGCCACTCTCTTACTCCTCCTCGCTTCGCCGCTGGTGGTTCCGGCCTACTCATATTTCAAGGCGTGGGCCTCGAACCGGGTCGGGTCGTCGGATCCGGAAAAGCCGGTTGCGGTTTTGGTTCTGCACGAGCCGCTGCTGGCGGCGGAAAAGCCGGAGGTGGTTCCGTCGTCGTCGTCGTCGGAGGATGACGTGGCGGTGGTGGAGAGGAGGAGGAGACCGGTGATCGGAGAGGAGCACACAATTTTCGAGGCGATGAGGACTTTGGATTTCTGGATACTTTTTGTGTCGTTTCTGTGTGGGGTGGGGACTGGATTGGCGGTTATGAACAATTTGGGCCAGATTGGGCTGGCGCTTGGATACGCCGACGTTTCGATCTTCGTTTCGCTCACCAGTATTTGGGGGTTTTTCGGGCGAATCGTTTCGGGTATGGTTTCCGAGTACTTCATCAGGAAAGCGGCAATACCAAGGCCACTATGGAATGCAGCTTCTCAGATTCTAATGGCTGTTGGATACATACTCCTCGCCATTGCCATGCCTGGCTCCCTCTACATTGGTTCAATTGTGGTCGGAATCTGCTATGGAGTTCGTCTTGCTATCACAGTCCCAGCAGCATCTGAACTATTTGGTCTCAAATACTATGGGCTTATCTACAACGTTCTGATCCTCAATCTCCCACTTGGGTCCTTACTCTTCTCAGGCCTCCTCGCCGGGCTTTTATACGATATGGAGGCTACCCCAACGGCCGGAGGTGGCAACACCTGCATTGGGGCCCATTGTTACAGGCTTGTGTTTGTTGTCATGGCCATTGCCTGTGTTGTTGGGTTTGGTTTGGACATTTTGTTGTCCATCAGAACTAGGCGGCTTTACACGAAGATTCAAGCTGGCAAGAAAACAAAGAGAGTTTCTAATGGCACATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

549

Amino Acids

59.74

Weight (kDa)

8.56

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	12 - 257	1.3e-94	Nodulin-like
NFD4_C	PF23262	320 - 532	3e-34	NFD4, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16660 AT2G16660 AT4G34950
fragaria_vesca	FvH4_1g11700 FvH4_2g01480
malus_domestica	MD02G1130000.v1.1 MD05G1119300.v1.1 MD10G1122400.v1.1
prunus_persica	Prupe.7G169700_v2.0.a1 Prupe.8G163500_v2.0.a1
pyrus_communis	pycom02g10190 pycom05g11320 pycom05g11330 pycom10g10530
rosa_chinensis	RchiOBHm_Chr2g0099271 RchiOBHm_Chr6g0244111
rosa_laevigata	RLG00000015380 RLG00000016867
rosa_multiflora	Rmu_sc0001455.1_g000032 Rmu_sc0029692.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143260 Rroxscaffold_7G00216060
rosa_rugosa	Rorug02G0078300 Rorug05G0507500
rosa_samantha	Rh2AG127600 Rh2BG130600 Rh2CG131800 Rh2DG132300 Rh6AG022000 Rh6BG017700 Rh6CG014400 Rh6DG015600
rosa_wichuraiana	Rw2G009850 Rw6G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1496
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	1496
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	36, 1125
AccBSI	CCGCTC	1 cut(s)	491
AccII	CGCG	2 cut(s)	200, 579
AccIII	TCCGGA	3 cut(s)	408, 694, 823
AclI	AACGTT	1 cut(s)	1383
AclWI	GGATC	3 cut(s)	815, 828, 1384
AcoI	YGGCCR	4 cut(s)	378, 510, 1470, 1530
AcvI	CACGTG	1 cut(s)	366
AcyI	GRCGYC	2 cut(s)	174, 276
AdeI	CACNNNGTG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	320, 1169
AflIII	ACRYGT	1 cut(s)	392
AgeI	ACCGGT	2 cut(s)	424, 946
AgsI	TTSAA	4 cut(s)	643, 787, 1287, 1607
AjiI	CACGTC	2 cut(s)	393, 919
AjnI	CCWGG	3 cut(s)	227, 675, 1264
AluBI	AGCT	5 cut(s)	142, 148, 185, 1214, 1610
AluI	AGCT	5 cut(s)	142, 148, 185, 1214, 1610
Alw21I	GWGCWC	3 cut(s)	150, 464, 966
Alw26I	GTCTC	3 cut(s)	433, 937, 1361
AlwI	GGATC	3 cut(s)	815, 828, 1384
AlwNI	CAGNNNCTG	1 cut(s)	1343
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	3 cut(s)	408, 694, 823
ApaI	GGGCCC	1 cut(s)	1501
ApeKI	GCWGC	3 cut(s)	862, 1211, 1337
AsiGI	ACCGGT	2 cut(s)	424, 946
Asp700I	GAANNNNTTC	1 cut(s)	1147
AspLEI	GCGC	2 cut(s)	278, 1081
AsuC2I	CCSGG	2 cut(s)	806, 1438
AsuHPI	GGTGA	4 cut(s)	43, 550, 961, 1108
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	5 cut(s)	64, 232, 422, 697, 1410
BaeGI	GKGCMC	1 cut(s)	1501
BalI	TGGCCA	1 cut(s)	1532
BamHI	GGATCC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	150, 1501
BauI	CACGAG	1 cut(s)	854
BbrPI	CACGTG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	3 cut(s)	150, 464, 966
BbvI	GCAGC	3 cut(s)	849, 1223, 1349
BccI	CCATC	3 cut(s)	31, 38, 1583
BceAI	ACGGC	7 cut(s)	289, 365, 393, 518, 533, 661, 1485
BciT130I	CCWGG	3 cut(s)	229, 677, 1266
BciVI	GTATCC	3 cut(s)	996, 1079, 1232
BcnI	CCSGG	2 cut(s)	806, 1438
BcoDI	GTCTC	3 cut(s)	433, 937, 1361
BfaI	CTAG	1 cut(s)	1584
BfoI	RGCGCY	2 cut(s)	279, 1082
BfuAI	ACCTGC	1 cut(s)	1496
BfuI	GTATCC	3 cut(s)	996, 1079, 1232
BisI	GCNGC	8 cut(s)	758, 860, 863, 870, 1185, 1212, 1338, 1589
BlsI	GCNGC	8 cut(s)	759, 861, 864, 871, 1186, 1213, 1339, 1590
BmcAI	AGTACT	1 cut(s)	1169
Bme1390I	CCNGG	5 cut(s)	229, 677, 806, 1266, 1438
Bme18I	GGWCC	5 cut(s)	64, 232, 422, 697, 1410
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	2 cut(s)	393, 919
BmrFI	CCNGG	5 cut(s)	229, 677, 806, 1266, 1438
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	2 cut(s)	100, 1349
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	715
BpuMI	CCSGG	2 cut(s)	806, 1438
BsaAI	YACGTR	2 cut(s)	366, 451
BsaHI	GRCGYC	2 cut(s)	174, 276
BsaI	GGTCTC	3 cut(s)	433, 937, 1361
BsaJI	CCNNGG	4 cut(s)	228, 418, 606, 1193
BsaWI	WCCGGW	5 cut(s)	408, 424, 694, 823, 946
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 143, 173, 710, 740
Bse118I	RCCGGY	3 cut(s)	424, 832, 946
Bse1I	ACTGG	6 cut(s)	67, 280, 326, 513, 1042, 1119
Bse3DI	GCAATG	2 cut(s)	1254, 1533
BseAI	TCCGGA	3 cut(s)	408, 694, 823
BseBI	CCWGG	3 cut(s)	229, 677, 1266
BseDI	CCNNGG	4 cut(s)	228, 418, 606, 1193
BseGI	GGATG	2 cut(s)	375, 919
BseMI	GCAATG	2 cut(s)	1254, 1533
BseMII	CTCAG	4 cut(s)	152, 449, 1232, 1437
BseNI	ACTGG	6 cut(s)	67, 280, 326, 513, 1042, 1119
BseSI	GKGCMC	1 cut(s)	1501
BseX3I	CGGCCG	2 cut(s)	378, 1470
BseXI	GCAGC	3 cut(s)	849, 1223, 1349
BseYI	CCCAGC	1 cut(s)	1333
BsgI	GTGCAG	2 cut(s)	469, 836
Bsh1236I	CGCG	2 cut(s)	200, 579
Bsh1285I	CGRYCG	3 cut(s)	217, 381, 1473
BshNI	GGYRCC	1 cut(s)	275
BshTI	ACCGGT	2 cut(s)	424, 946
BsiEI	CGRYCG	3 cut(s)	217, 381, 1473
BsiHKAI	GWGCWC	3 cut(s)	150, 464, 966
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	1048, 1316
BsmAI	GTCTC	3 cut(s)	433, 937, 1361
BsmFI	GGGAC	2 cut(s)	1048, 1316
BsmI	GAATGC	2 cut(s)	435, 1213
Bso31I	GGTCTC	3 cut(s)	433, 937, 1361
BsoBI	CYCGRG	1 cut(s)	143
Bsp120I	GGGCCC	1 cut(s)	1497
Bsp1286I	GDGCHC	4 cut(s)	150, 464, 966, 1501
Bsp13I	TCCGGA	3 cut(s)	408, 694, 823
Bsp143I	GATC	5 cut(s)	567, 820, 951, 1101, 1389
BspCNI	CTCAG	4 cut(s)	151, 450, 1231, 1436
BspEI	TCCGGA	3 cut(s)	408, 694, 823
BspFNI	CGCG	2 cut(s)	200, 579
BspHI	TCATGA	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	1496
BspPI	GGATC	3 cut(s)	815, 828, 1384
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	3 cut(s)	433, 937, 1361
BsrBI	CCGCTC	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	1254, 1533
BsrFI	RCCGGY	3 cut(s)	424, 832, 946
BsrI	ACTGG	6 cut(s)	67, 280, 326, 513, 1042, 1119
BssAI	RCCGGY	3 cut(s)	424, 832, 946
BssECI	CCNNGG	4 cut(s)	228, 418, 606, 1193
BssMI	GATC	5 cut(s)	567, 820, 951, 1101, 1389
BssNI	GRCGYC	2 cut(s)	174, 276
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	1 cut(s)	1193
Bst2BI	CACGAG	1 cut(s)	854
Bst2UI	CCWGG	3 cut(s)	229, 677, 1266
Bst4CI	ACNGT	1 cut(s)	1330
Bst6I	CTCTTC	1 cut(s)	1424
BstACI	GRCGYC	2 cut(s)	174, 276
BstAPI	GCANNNNNTGC	1 cut(s)	1488
BstBAI	YACGTR	2 cut(s)	366, 451
BstC8I	GCNNGC	5 cut(s)	202, 531, 867, 1077, 1612
BstDEI	CTNAG	4 cut(s)	138, 458, 1218, 1423
BstF5I	GGATG	2 cut(s)	375, 919
BstFNI	CGCG	2 cut(s)	200, 579
BstH2I	RGCGCY	2 cut(s)	279, 1082
BstHHI	GCGC	2 cut(s)	278, 1081
BstKTI	GATC	5 cut(s)	570, 823, 954, 1104, 1392
BstMAI	GTCTC	3 cut(s)	433, 937, 1361
BstMBI	GATC	5 cut(s)	567, 820, 951, 1101, 1389
BstMCI	CGRYCG	3 cut(s)	217, 381, 1473
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 351, 859, 1488
BstNI	CCWGG	3 cut(s)	229, 677, 1266
BstSCI	CCNGG	5 cut(s)	227, 675, 804, 1264, 1436
BstSLI	GKGCMC	1 cut(s)	1501
BstSNI	TACGTA	1 cut(s)	451
BstUI	CGCG	2 cut(s)	200, 579
BstV1I	GCAGC	3 cut(s)	849, 1223, 1349
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BstZI	CGGCCG	2 cut(s)	378, 1470
BsuI	GTATCC	3 cut(s)	996, 1079, 1232
BtgZI	GCGATG	1 cut(s)	995
BtrI	CACGTC	2 cut(s)	393, 919
BtsCI	GGATG	2 cut(s)	375, 919
BtsIMutI	CAGTG	2 cut(s)	287, 474
BveI	ACCTGC	1 cut(s)	1496
Cac8I	GCNNGC	5 cut(s)	202, 531, 867, 1077, 1612
CaiI	CAGNNNCTG	1 cut(s)	1343
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	2 cut(s)	278, 1081
Cfr10I	RCCGGY	3 cut(s)	424, 832, 946
Csp6I	GTAC	2 cut(s)	319, 1168
CspAI	ACCGGT	2 cut(s)	424, 946
CviAII	CATG	6 cut(s)	127, 346, 526, 565, 1261, 1528
CviQI	GTAC	2 cut(s)	319, 1168
DdeI	CTNAG	4 cut(s)	138, 458, 1218, 1423
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	5 cut(s)	569, 822, 953, 1103, 1391
DpnII	GATC	5 cut(s)	567, 820, 951, 1101, 1389
DraIII	CACNNNGTG	1 cut(s)	366
EaeI	YGGCCR	4 cut(s)	378, 510, 1470, 1530
EagI	CGGCCG	2 cut(s)	378, 1470
Eam1104I	CTCTTC	1 cut(s)	1424
EarI	CTCTTC	1 cut(s)	1424
EciI	GGCGGA	3 cut(s)	592, 718, 887
Ecl136II	GAGCTC	1 cut(s)	148
EclXI	CGGCCG	2 cut(s)	378, 1470
Eco105I	TACGTA	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	1193
Eco147I	AGGCCT	1 cut(s)	1428
Eco24I	GRGCYC	2 cut(s)	150, 1501
Eco31I	GGTCTC	3 cut(s)	433, 937, 1361
Eco47I	GGWCC	5 cut(s)	64, 232, 422, 697, 1410
Eco52I	CGGCCG	2 cut(s)	378, 1470
Eco53kI	GAGCTC	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	3 cut(s)	232, 1410, 1497
EcoRII	CCWGG	3 cut(s)	227, 675, 1264
EcoT14I	CCWWGG	1 cut(s)	1193
EcoT38I	GRGCYC	2 cut(s)	150, 1501
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	1193
FaeI	CATG	6 cut(s)	130, 349, 529, 568, 1264, 1531
FaqI	GGGAC	2 cut(s)	1048, 1316
FatI	CATG	6 cut(s)	126, 345, 525, 564, 1260, 1527
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	8 cut(s)	758, 860, 863, 870, 1185, 1212, 1338, 1589
FokI	GGATG	2 cut(s)	382, 926
FriOI	GRGCYC	2 cut(s)	150, 1501
Fsp4HI	GCNGC	8 cut(s)	758, 860, 863, 870, 1185, 1212, 1338, 1589
FspBI	CTAG	1 cut(s)	1584
GlaI	GCGC	2 cut(s)	277, 1080
GluI	GCNGC	8 cut(s)	758, 860, 863, 870, 1185, 1212, 1338, 1589
GsaI	CCCAGC	1 cut(s)	1337
HaeII	RGCGCY	2 cut(s)	279, 1082
HhaI	GCGC	2 cut(s)	278, 1081
Hin1I	GRCGYC	2 cut(s)	174, 276
Hin1II	CATG	6 cut(s)	130, 349, 529, 568, 1264, 1531
Hin6I	GCGC	2 cut(s)	276, 1079
HinP1I	GCGC	2 cut(s)	276, 1079
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	5 cut(s)	620, 1143, 1222, 1299, 1603
HphI	GGTGA	4 cut(s)	43, 550, 961, 1108
Hpy188III	TCNNGA	7 cut(s)	127, 409, 624, 695, 824, 1000, 1177
HpyAV	CCTTC	2 cut(s)	553, 664
HpyCH4III	ACNGT	1 cut(s)	1330
HpyCH4IV	ACGT	9 cut(s)	174, 365, 392, 450, 707, 720, 918, 1095, 1383
HpyCH4V	TGCA	5 cut(s)	345, 486, 853, 1211, 1491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 351, 859, 1488
HpyF3I	CTNAG	4 cut(s)	138, 458, 1218, 1423
HpySE526I	ACGT	9 cut(s)	174, 365, 392, 450, 707, 720, 918, 1095, 1383
Hsp92I	GRCGYC	2 cut(s)	174, 276
Hsp92II	CATG	6 cut(s)	130, 349, 529, 568, 1264, 1531
HspAI	GCGC	2 cut(s)	276, 1079
KasI	GGCGCC	1 cut(s)	275
Kpn2I	TCCGGA	3 cut(s)	408, 694, 823
Kzo9I	GATC	5 cut(s)	567, 820, 951, 1101, 1389
LmnI	GCTCC	5 cut(s)	16, 254, 411, 961, 1274
Lsp1109I	GCAGC	3 cut(s)	849, 1223, 1349
LweI	GCATC	2 cut(s)	100, 1349
MaeI	CTAG	1 cut(s)	1584
MaeII	ACGT	9 cut(s)	174, 365, 392, 450, 707, 720, 918, 1095, 1383
MaeIII	GTNAC	5 cut(s)	49, 269, 388, 535, 1505
MalI	GATC	5 cut(s)	569, 822, 953, 1103, 1391
MbiI	CCGCTC	1 cut(s)	491
MboI	GATC	5 cut(s)	567, 820, 951, 1101, 1389
MboII	GAAGA	8 cut(s)	562, 631, 649, 703, 715, 1096, 1411, 1612
MfeI	CAATTG	1 cut(s)	1287
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	4 cut(s)	150, 464, 966, 1501
MlsI	TGGCCA	1 cut(s)	1532
MluCI	AATT	3 cut(s)	969, 1057, 1287
MluNI	TGGCCA	1 cut(s)	1532
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	7 cut(s)	123, 237, 331, 798, 888, 1216, 1276
Mox20I	TGGCCA	1 cut(s)	1532
MroI	TCCGGA	3 cut(s)	408, 694, 823
MroXI	GAANNNNTTC	1 cut(s)	1147
MscI	TGGCCA	1 cut(s)	1532
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	3 cut(s)	368, 563, 1259
Msp20I	TGGCCA	1 cut(s)	1532
MspA1I	CMGCKG	2 cut(s)	760, 862
MspR9I	CCNGG	5 cut(s)	229, 677, 806, 1266, 1438
MunI	CAATTG	1 cut(s)	1287
Mva1269I	GAATGC	2 cut(s)	435, 1213
MvaI	CCWGG	3 cut(s)	229, 677, 1266
MvnI	CGCG	2 cut(s)	200, 579
MwoI	GCNNNNNNNGC	4 cut(s)	206, 351, 859, 1488
NarI	GGCGCC	1 cut(s)	276
NciI	CCSGG	2 cut(s)	806, 1438
NdeII	GATC	5 cut(s)	567, 820, 951, 1101, 1389
NlaIII	CATG	6 cut(s)	130, 349, 529, 568, 1264, 1531
NmeAIII	GCCGAG	2 cut(s)	488, 631
NmuCI	GTSAC	3 cut(s)	49, 388, 535
PaeR7I	CTCGAG	1 cut(s)	143
PagI	TCATGA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	1496
PceI	AGGCCT	1 cut(s)	1428
PcsI	WCGNNNNNNNCGW	5 cut(s)	171, 252, 657, 902, 1143
PctI	GAATGC	2 cut(s)	435, 1213
PdmI	GAANNNNTTC	1 cut(s)	1147
PfeI	GAWTC	4 cut(s)	1143, 1222, 1299, 1603
PflMI	CCANNNNNTGG	2 cut(s)	36, 1125
PinAI	ACCGGT	2 cut(s)	424, 946
PkrI	GCNGC	8 cut(s)	759, 861, 864, 871, 1186, 1213, 1339, 1590
PleI	GAGTC	1 cut(s)	628
PluTI	GGCGCC	1 cut(s)	279
PmaCI	CACGTG	1 cut(s)	366
PmlI	CACGTG	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	2 cut(s)	366, 451
PpuMI	RGGWCCY	2 cut(s)	232, 1410
Psp124BI	GAGCTC	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	1383
Psp5II	RGGWCCY	2 cut(s)	232, 1410
Psp6I	CCWGG	3 cut(s)	227, 675, 1264
PspCI	CACGTG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	1333
PspGI	CCWGG	3 cut(s)	227, 675, 1264
PspOMI	GGGCCC	1 cut(s)	1497
PspPPI	RGGWCCY	2 cut(s)	232, 1410
PspXI	VCTCGAGB	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	1343
PsuI	RGATCY	1 cut(s)	820
RsaI	GTAC	2 cut(s)	320, 1169
RsaNI	GTAC	2 cut(s)	319, 1168
RseI	CAYNNNNRTG	3 cut(s)	368, 563, 1259
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	8 cut(s)	758, 860, 863, 870, 1185, 1212, 1338, 1589
Sau3AI	GATC	5 cut(s)	567, 820, 951, 1101, 1389
ScaI	AGTACT	1 cut(s)	1169
SchI	GAGTC	1 cut(s)	629
ScrFI	CCNGG	5 cut(s)	229, 677, 806, 1266, 1438
SduI	GDGCHC	4 cut(s)	150, 464, 966, 1501
SfaNI	GCATC	2 cut(s)	100, 1349
SfoI	GGCGCC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	143
SinI	GGWCC	5 cut(s)	64, 232, 422, 697, 1410
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	3 cut(s)	368, 563, 1259
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SnaBI	TACGTA	1 cut(s)	451
Sse9I	AATT	3 cut(s)	969, 1057, 1287
SseBI	AGGCCT	1 cut(s)	1428
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	1584
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	1428
StyD4I	CCNGG	5 cut(s)	227, 675, 804, 1264, 1436
StyI	CCWWGG	1 cut(s)	1193
TaaI	ACNGT	1 cut(s)	1330
TaiI	ACGT	9 cut(s)	177, 368, 395, 453, 710, 723, 921, 1098, 1386
TaqI	TCGA	5 cut(s)	144, 255, 800, 975, 1100
TasI	AATT	3 cut(s)	969, 1057, 1287
TatI	WGTACW	1 cut(s)	1167
TauI	GCSGC	5 cut(s)	760, 862, 872, 1187, 1591
TfiI	GAWTC	4 cut(s)	1143, 1222, 1299, 1603
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	287, 481
TseFI	GTSAC	3 cut(s)	49, 388, 535
TseI	GCWGC	3 cut(s)	862, 1211, 1337
Tsp45I	GTSAC	3 cut(s)	49, 388, 535
TspDTI	ATGAA	5 cut(s)	143, 386, 679, 1067, 1162
TspGWI	ACGGA	4 cut(s)	151, 241, 579, 882
TspRI	CASTG	2 cut(s)	287, 481
Van91I	CCANNNNNTGG	2 cut(s)	36, 1125
VpaK11BI	GGWCC	5 cut(s)	64, 232, 422, 697, 1410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1200
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	1147
XspI	CTAG	1 cut(s)	1584
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.