Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003876

Physical Location & Seq

Genomic Coordinates Forward (+)

10783787 .. 10786173

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016867

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTGCATAGTTTTGTGCATGGGGGGCAACAGCACAACATGGATGAACACTGCAGTGCTAGTAACTTGCATGAGAAATTTCACAAAAAACCGAGGTCCAGTTTCAGGCATCTGCAAGGGTTATGTAGGATTAAGCACAGCAATCTTCACAGACTTGTGCACTTCTCTATTCTCCTCAAGCCCCTCCAAATTTCTTCTCATGCTTGCTATAGTCCCTGCCATTATCTGCATAGCAGCGTGCATATTCCTCCAAGAAACCCCACCCGCTTCGAGTCCATCAGAGGAAAAACAAGAAGCAGAGGTCTTCAACATCTTCAATATCCTCGCCATTGTTGTAGCCGTCTATCTCTTGACCTTTGACATCACTGGACCTCATGGTCATGTTCTCTCTTTGGCATTTGCAATAGGACTAATTTTCTTGCTAGCTATGCCTTTGGGTGTGCCTTTGTACACTTTTCTTTGCACATCCAGATCTAATAGTTTTGGTATAGAGCATAAAACACTTGAGGATCCCCTGGTTGTTCAGAAAGCACTTTTGGAAAAGTCTGAGGAATTAGCAGGAGTTAAGGTGGCAGATTTTGAAGAATCAAAGCAAAGACCATCGATTGGGGATGATCATAACATAGTCCAAATGCTACAAACATTTGATTTTTGGATACTGTTTGGGTCCTTTCTCTGTGGCACAGGCACTGCAATGTGTGTCATGAACAACATGGCGCAGATGGGGCTGGCACTCGGCTACTCAAAGGTCTCTATTTTCATCTCACTTCTTAGCATTTGGGGCTTTTTCGGGCGCATAGTCTCCGGCCTGATCTCTGAATACTACATTGGGAAACATGCCATGCCTAGGCCATTTTGGAATGCAATTGCTGAGATCCTAATGGCACTGGGATACCTAGCCATGGCTCTAGCCATGCCTGGATCTCTCTACATTGGCTCAATTTTTGTGGGCATGGGCTATGGGTTCCTTCTCACTGTAACAGTCCCAGTTGCCTCAGAGCTATTTGGTCTAAAATACTATGGTCTTTTATACAACATTCTGATCCTCAACCTTCCTTTGGGTTCTTTTCTCTTCTCCGGTTTACTTGCGGGTTATCTCTATGATGCTGAAGCTACAAAAACCAGTGAAGGGGGCAGCACTTGTGTCGGGTCACACTGTTACCGGCTTGTGAACTTGATCATGGCCCTTGCTTCTGTTTTGGGACTTGTACTGGATGTGTTGTTGGCCTTTAGATCAAAGAAAGTGTACACCAAGATTTACGAGAGCAAGAACAAGAAGAAGATCATGGGTTTTGCAGTATCAGCAAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

438

Amino Acids

47.47

Weight (kDa)

7.88

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	1 - 148	9.3e-43	Nodulin-like
NFD4_C	PF23262	207 - 416	2.5e-26	NFD4, C-terminal domain
MFS_1	PF07690	220 - 415	1.6e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16660 AT2G16660 AT4G34950
fragaria_vesca	FvH4_1g11700 FvH4_2g01480
malus_domestica	MD02G1130000.v1.1 MD05G1119300.v1.1 MD10G1122400.v1.1
prunus_persica	Prupe.7G169700_v2.0.a1 Prupe.8G163500_v2.0.a1
pyrus_communis	pycom02g10190 pycom05g11320 pycom05g11330 pycom10g10530
rosa_chinensis	RchiOBHm_Chr2g0099271 RchiOBHm_Chr6g0244111
rosa_laevigata	RLG00000015380 RLG00000016867
rosa_multiflora	Rmu_sc0001455.1_g000032 Rmu_sc0029692.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143260 Rroxscaffold_7G00216060
rosa_rugosa	Rorug02G0078300 Rorug05G0507500
rosa_samantha	Rh2AG127600 Rh2BG130600 Rh2CG131800 Rh2DG132300 Rh6AG022000 Rh6BG017700 Rh6CG014400 Rh6DG015600
rosa_wichuraiana	Rw2G009850 Rw6G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	605
AciI	CCGC	2 cut(s)	264, 1088
AclWI	GGATC	5 cut(s)	503, 516, 868, 928, 1036
AcsI	RAATTY	2 cut(s)	76, 188
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	3 cut(s)	449, 1209, 1247
AfiI	CCNNNNNNNGG	6 cut(s)	104, 605, 846, 901, 1057, 1128
AgsI	TTSAA	3 cut(s)	307, 316, 581
AjnI	CCWGG	2 cut(s)	513, 916
AjuI	GAANNNNNNNTTGG	4 cut(s)	518, 550, 810, 842
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	3 cut(s)	425, 1000, 1112
AluI	AGCT	3 cut(s)	425, 1000, 1112
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	2 cut(s)	754, 805
Alw44I	GTGCAC	1 cut(s)	157
AlwI	GGATC	5 cut(s)	503, 516, 868, 928, 1036
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	4 cut(s)	805, 848, 1182, 1224
ApaLI	GTGCAC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	233, 1134
ApoI	RAATTY	2 cut(s)	76, 188
AspA2I	CCTAGG	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	718, 795
AspS9I	GGNCC	4 cut(s)	95, 368, 666, 1183
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	3 cut(s)	95, 368, 666
AvrII	CCTAGG	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	245, 1146
BccI	CCATC	3 cut(s)	283, 607, 715
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	1126, 1160
BciT130I	CCWGG	2 cut(s)	515, 918
BciVI	GTATCC	2 cut(s)	648, 884
BclI	TGATCA	2 cut(s)	613, 1176
BcoDI	GTCTC	2 cut(s)	754, 805
BfaI	CTAG	5 cut(s)	59, 422, 846, 896, 908
BfmI	CTRYAG	2 cut(s)	51, 207
BfuI	GTATCC	2 cut(s)	648, 884
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	2 cut(s)	234, 1135
BlnI	CCTAGG	1 cut(s)	845
BlsI	GCNGC	2 cut(s)	235, 1136
Bme1390I	CCNGG	2 cut(s)	515, 918
Bme18I	GGWCC	3 cut(s)	95, 368, 666
BmgT120I	GGNCC	4 cut(s)	95, 368, 666, 1183
BmiI	GGNNCC	3 cut(s)	510, 667, 965
BmrFI	CCNGG	2 cut(s)	515, 918
BmrI	ACTGGG	2 cut(s)	896, 980
BmsI	GCATC	3 cut(s)	117, 1093, 1298
BmtI	GCTAGC	1 cut(s)	425
BmuI	ACTGGG	2 cut(s)	896, 980
BpiI	GAAGAC	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	160, 524
Bsa29I	ATCGAT	1 cut(s)	602
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	4 cut(s)	91, 513, 845, 900
BsaWI	WCCGGW	1 cut(s)	1076
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 605, 846, 901, 1057, 1128
Bse118I	RCCGGY	1 cut(s)	1161
Bse1I	ACTGG	6 cut(s)	98, 370, 891, 986, 1122, 1215
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	515, 918
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	4 cut(s)	91, 513, 845, 900
BseGI	GGATG	4 cut(s)	48, 464, 616, 1219
BseLI	CCNNNNNNNGG	6 cut(s)	104, 605, 846, 901, 1057, 1128
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	537, 861, 1008
BseNI	ACTGG	6 cut(s)	98, 370, 891, 986, 1122, 1215
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	245, 1146
BshFI	GGCC	4 cut(s)	807, 850, 1184, 1226
BshVI	ATCGAT	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	804, 1077, 1162
BslFI	GGGAC	3 cut(s)	197, 968, 1215
BslI	CCNNNNNNNGG	6 cut(s)	104, 605, 846, 901, 1057, 1128
BsmAI	GTCTC	2 cut(s)	754, 805
BsmFI	GGGAC	3 cut(s)	197, 968, 1215
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	4 cut(s)	807, 850, 1184, 1226
Bso31I	GGTCTC	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp1407I	TGTACA	2 cut(s)	447, 1245
Bsp19I	CCATGG	1 cut(s)	900
BspACI	CCGC	2 cut(s)	264, 1088
BspANI	GGCC	4 cut(s)	807, 850, 1184, 1226
BspCNI	CTCAG	3 cut(s)	538, 862, 1007
BspDI	ATCGAT	1 cut(s)	602
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	3 cut(s)	510, 667, 965
BspMAI	CTGCAG	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	5 cut(s)	503, 516, 868, 928, 1036
BspTNI	GGTCTC	1 cut(s)	754
BsrDI	GCAATG	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	1161
BsrGI	TGTACA	2 cut(s)	447, 1245
BsrI	ACTGG	6 cut(s)	98, 370, 891, 986, 1122, 1215
BssAI	RCCGGY	1 cut(s)	1161
BssECI	CCNNGG	4 cut(s)	91, 513, 845, 900
BssT1I	CCWWGG	2 cut(s)	845, 900
Bst2UI	CCWGG	2 cut(s)	515, 918
Bst4CI	ACNGT	4 cut(s)	660, 976, 982, 1157
Bst6I	CTCTTC	1 cut(s)	1076
BstAUI	TGTACA	2 cut(s)	447, 1245
BstC8I	GCNNGC	4 cut(s)	204, 238, 423, 729
BstDEI	CTNAG	4 cut(s)	546, 770, 870, 994
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	4 cut(s)	48, 464, 616, 1219
BstHHI	GCGC	2 cut(s)	718, 795
BstMAI	GTCTC	2 cut(s)	754, 805
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 427, 724, 780, 1301
BstNI	CCWGG	2 cut(s)	515, 918
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	513, 916
BstSFI	CTRYAG	2 cut(s)	51, 207
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	245, 1146
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	4 cut(s)	470, 508, 873, 920
BstYI	RGATCY	4 cut(s)	470, 508, 873, 920
Bsu15I	ATCGAT	1 cut(s)	602
BsuI	GTATCC	2 cut(s)	648, 884
BsuRI	GGCC	4 cut(s)	807, 850, 1184, 1226
BsuTUI	ATCGAT	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	900
BtsCI	GGATG	4 cut(s)	48, 464, 616, 1219
BtsI	GCAGTG	3 cut(s)	48, 60, 687
BtsIMutI	CAGTG	8 cut(s)	48, 60, 363, 687, 884, 972, 1129, 1153
Cac8I	GCNNGC	4 cut(s)	204, 238, 423, 729
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	2 cut(s)	718, 795
Cfr10I	RCCGGY	1 cut(s)	1161
Cfr13I	GGNCC	4 cut(s)	95, 368, 666, 1183
ClaI	ATCGAT	1 cut(s)	602
Csp6I	GTAC	3 cut(s)	448, 1208, 1246
CspCI	CAANNNNNGTGG	2 cut(s)	927, 962
CviQI	GTAC	3 cut(s)	448, 1208, 1246
DdeI	CTNAG	4 cut(s)	546, 770, 870, 994
DrdI	GACNNNNNNGTC	1 cut(s)	375
DseDI	GACNNNNNNGTC	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	1076
EarI	CTCTTC	1 cut(s)	1076
Eco130I	CCWWGG	2 cut(s)	845, 900
Eco31I	GGTCTC	1 cut(s)	754
Eco47I	GGWCC	3 cut(s)	95, 368, 666
Eco57I	CTGAAG	1 cut(s)	1128
EcoO109I	RGGNCCY	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	513, 916
EcoT14I	CCWWGG	2 cut(s)	845, 900
ErhI	CCWWGG	2 cut(s)	845, 900
FaqI	GGGAC	3 cut(s)	197, 968, 1215
FauI	CCCGC	2 cut(s)	271, 1081
FbaI	TGATCA	2 cut(s)	613, 1176
Fnu4HI	GCNGC	2 cut(s)	234, 1135
FokI	GGATG	4 cut(s)	55, 451, 623, 1226
Fsp4HI	GCNGC	2 cut(s)	234, 1135
FspBI	CTAG	5 cut(s)	59, 422, 846, 896, 908
GlaI	GCGC	2 cut(s)	717, 794
GluI	GCNGC	2 cut(s)	234, 1135
HaeIII	GGCC	4 cut(s)	807, 850, 1184, 1226
HapII	CCGG	3 cut(s)	804, 1077, 1162
HhaI	GCGC	2 cut(s)	718, 795
Hin6I	GCGC	2 cut(s)	716, 793
HinP1I	GCGC	2 cut(s)	716, 793
HinfI	GANTC	2 cut(s)	271, 584
HpaII	CCGG	3 cut(s)	804, 1077, 1162
Hpy166II	GTNNAC	6 cut(s)	159, 450, 1082, 1171, 1246, 1248
Hpy188I	TCNGA	6 cut(s)	280, 525, 547, 817, 997, 1041
Hpy188III	TCNNGA	3 cut(s)	349, 468, 703
Hpy8I	GTNNAC	6 cut(s)	159, 450, 1082, 1171, 1246, 1248
HpyAV	CCTTC	3 cut(s)	977, 1061, 1121
HpyCH4III	ACNGT	4 cut(s)	660, 976, 982, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 427, 724, 780, 1301
HpyF3I	CTNAG	4 cut(s)	546, 770, 870, 994
HspAI	GCGC	2 cut(s)	716, 793
Ksp22I	TGATCA	2 cut(s)	613, 1176
Lsp1109I	GCAGC	2 cut(s)	245, 1146
LweI	GCATC	3 cut(s)	117, 1093, 1298
MaeI	CTAG	5 cut(s)	59, 422, 846, 896, 908
MaeIII	GTNAC	4 cut(s)	61, 976, 1149, 1157
MboII	GAAGA	8 cut(s)	136, 185, 295, 304, 593, 1063, 1288, 1291
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	4 cut(s)	470, 508, 873, 920
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	6 cut(s)	76, 188, 411, 551, 864, 939
MlyI	GAGTC	1 cut(s)	280
MseI	TTAA	2 cut(s)	131, 564
MslI	CAYNNNNRTG	3 cut(s)	53, 378, 692
MspI	CCGG	3 cut(s)	804, 1077, 1162
MspR9I	CCNGG	2 cut(s)	515, 918
MunI	CAATTG	1 cut(s)	864
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	2 cut(s)	515, 918
MwoI	GCNNNNNNNGC	5 cut(s)	24, 427, 724, 780, 1301
NcoI	CCATGG	1 cut(s)	900
NheI	GCTAGC	1 cut(s)	421
NlaIV	GGNNCC	3 cut(s)	510, 667, 965
NmeAIII	GCCGAG	1 cut(s)	714
NmuCI	GTSAC	1 cut(s)	1149
NspI	RCATGY	1 cut(s)	839
OliI	CACNNNNGTG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	702
PctI	GAATGC	1 cut(s)	865
PfeI	GAWTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	235, 1136
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PpuMI	RGGWCCY	1 cut(s)	666
Psp5II	RGGWCCY	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	513, 916
PspGI	CCWGG	2 cut(s)	513, 916
PspN4I	GGNNCC	3 cut(s)	510, 667, 965
PspPI	GGNCC	4 cut(s)	95, 368, 666, 1183
PspPPI	RGGWCCY	1 cut(s)	666
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	4 cut(s)	470, 508, 873, 920
RsaI	GTAC	3 cut(s)	449, 1209, 1247
RsaNI	GTAC	3 cut(s)	448, 1208, 1246
RseI	CAYNNNNRTG	3 cut(s)	53, 378, 692
SaqAI	TTAA	2 cut(s)	131, 564
SatI	GCNGC	2 cut(s)	234, 1135
Sau96I	GGNCC	4 cut(s)	95, 368, 666, 1183
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	515, 918
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	3 cut(s)	117, 1093, 1298
SfcI	CTRYAG	2 cut(s)	51, 207
SinI	GGWCC	3 cut(s)	95, 368, 666
SmiMI	CAYNNNNRTG	3 cut(s)	53, 378, 692
SmlI	CTYRAG	2 cut(s)	175, 503
SmoI	CTYRAG	2 cut(s)	175, 503
Sse9I	AATT	6 cut(s)	76, 188, 411, 551, 864, 939
SsiI	CCGC	2 cut(s)	264, 1088
SspMI	CTAG	5 cut(s)	59, 422, 846, 896, 908
StyD4I	CCNGG	2 cut(s)	513, 916
StyI	CCWWGG	2 cut(s)	845, 900
TaaI	ACNGT	4 cut(s)	660, 976, 982, 1157
TaqI	TCGA	2 cut(s)	269, 602
TasI	AATT	6 cut(s)	76, 188, 411, 551, 864, 939
TatI	WGTACW	3 cut(s)	447, 1207, 1245
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	2 cut(s)	131, 564
Tru9I	TTAA	2 cut(s)	131, 564
TscAI	CASTG	8 cut(s)	55, 60, 370, 694, 891, 979, 1129, 1160
TseFI	GTSAC	1 cut(s)	1149
TseI	GCWGC	2 cut(s)	233, 1134
Tsp45I	GTSAC	1 cut(s)	1149
TspDTI	ATGAA	3 cut(s)	59, 719, 748
TspRI	CASTG	8 cut(s)	55, 60, 370, 694, 891, 979, 1129, 1160
Van91I	CCANNNNNTGG	1 cut(s)	605
VneI	GTGCAC	1 cut(s)	157
VpaK11BI	GGWCC	3 cut(s)	95, 368, 666
XapI	RAATTY	2 cut(s)	76, 188
XceI	RCATGY	1 cut(s)	839
XmaJI	CCTAGG	1 cut(s)	845
XspI	CTAG	5 cut(s)	59, 422, 846, 896, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.