Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Reverse (-)

7476662 .. 7477683

Gene Structure 1022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCGAACACTTCAAACTCCGATCCCAATTCCGATATCCCATTTGCTTCCTCCAATGTAACTCTTCCTAGTTACAATCAAAACCCAAGAAGAAAACGTACTAAACTCACCAACAACGAAGTCGGTTCTTCTTCGTCTTCTCCAAGGCCTAAACCGGTCACGCAACCGGACCCTGATGCTTCACAAATCGCACGACCATGTACTGAATGTGGTAAACAATTCGGGTCACTGAAGGCACTCTTTGGACACATGAGATGTCACCCTGAACGTCAGTGGCGTGGCATCAACCCTCCTTCTAACTTCAAACGTAGGATCAACTCAAACGCTGCGTCATCATCCTCGAGTTGGGATCCATCTGAGGAAGAGCATAACATAGCCTCCTGTTTACTAATGATGGCTAATGGTGATGTCCCAACCCGTTCAAGTGAAGTTGAGGAACGGTTTGAGTGTGATGGTTGTAAGAAAGTGTTTGGGTCACATCAAGCGTTAGGCGGACATAGAGCAACACATAAAGACGTCAAAGGATGTTTCGCCAATAAAAACATAACCGAAGATCCTCCTCCTCCACCTCCTCAAGAGATCGTTGATCAAGATAAGGGCAAGAGTGTGAAGTTGGTCTCGGGGATGAATCATCGATGTAACATCTGTTCTAGAGTGTTCTCCAGTGGTCAAGCGTTAGGAGGTCACATGAGATGTCATTGGGAGAAAGATCAGGAAGAGAACCAAGTCAGGGGCATTGATCTTAATGTTCCTGCGGCGACATCTTCAGACACAACGTTAGGTTGTTCCTTGGATCTTAGGTTAGGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

270

Amino Acids

29.56

Weight (kDa)

8.29

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	65 - 89	3.6e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	147 - 172	1.2e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	211 - 235	1.6e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	519
AciI	CCGC	2 cut(s)	492, 755
AclI	AACGTT	1 cut(s)	776
AclWI	GGATC	6 cut(s)	17, 320, 344, 357, 548, 801
AcuI	CTGAAG	2 cut(s)	251, 750
AcyI	GRCGYC	1 cut(s)	516
AfaI	GTAC	2 cut(s)	100, 202
AfiI	CCNNNNNNNGG	2 cut(s)	345, 730
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	15, 304, 423
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	6 cut(s)	17, 320, 344, 357, 548, 801
Ama87I	CYCGRG	2 cut(s)	340, 619
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AsiGI	ACCGGT	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	100, 251, 416
AvaI	CYCGRG	2 cut(s)	340, 619
AvaII	GGWCC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	349
BarI	GAAGNNNNNNTAC	2 cut(s)	82, 114
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	361, 388, 446
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	2 cut(s)	69, 651
BisI	GCNGC	2 cut(s)	327, 756
BlsI	GCNGC	2 cut(s)	328, 757
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	2 cut(s)	340, 619
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	171, 351
BmsI	GCATC	2 cut(s)	166, 291
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	634
BsaHI	GRCGYC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	143, 789
BsaWI	WCCGGW	2 cut(s)	154, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 730
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	663
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	2 cut(s)	143, 789
BseGI	GGATG	3 cut(s)	335, 530, 630
BseLI	CCNNNNNNNGG	2 cut(s)	345, 730
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	663
BseRI	GAGGAG	3 cut(s)	549, 552, 561
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	148
BshTI	ACCGGT	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	634
BsiHKCI	CYCGRG	2 cut(s)	340, 619
BsiSI	CCGG	2 cut(s)	155, 167
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	345, 730
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	622
BsoBI	CYCGRG	2 cut(s)	340, 619
Bsp143I	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
BspACI	CCGC	2 cut(s)	492, 755
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	349
BspDI	ATCGAT	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	171, 351
BspPI	GGATC	6 cut(s)	17, 320, 344, 357, 548, 801
BspQI	GCTCTTC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	663
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	143, 789
BssMI	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
BssNI	GRCGYC	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	143, 789
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	3 cut(s)	69, 357, 711
BstACI	GRCGYC	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	357, 797
BstF5I	GGATG	3 cut(s)	335, 530, 630
BstKTI	GATC	9 cut(s)	25, 315, 352, 556, 582, 589, 712, 742, 796
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	3 cut(s)	349, 553, 793
BstYI	RGATCY	3 cut(s)	349, 553, 793
Bsu15I	ATCGAT	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	335, 530, 630
BtsIMutI	CAGTG	3 cut(s)	227, 278, 670
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	634
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	99, 201
CspAI	ACCGGT	1 cut(s)	154
CviAII	CATG	3 cut(s)	198, 250, 688
CviJI	RGCY	3 cut(s)	148, 377, 398
CviKI_1	RGCY	3 cut(s)	148, 377, 398
CviQI	GTAC	2 cut(s)	99, 201
DdeI	CTNAG	2 cut(s)	357, 797
DpnI	GATC	9 cut(s)	24, 314, 351, 555, 581, 588, 711, 741, 795
DpnII	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
Eam1104I	CTCTTC	3 cut(s)	69, 357, 711
EarI	CTCTTC	3 cut(s)	69, 357, 711
EciI	GGCGGA	1 cut(s)	507
Eco130I	CCWWGG	2 cut(s)	143, 789
Eco147I	AGGCCT	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	622
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	251, 750
Eco88I	CYCGRG	2 cut(s)	340, 619
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	143, 789
ErhI	CCWWGG	2 cut(s)	143, 789
FaeI	CATG	3 cut(s)	201, 253, 691
FaiI	YATR	8 cut(s)	199, 251, 369, 374, 498, 510, 545, 689
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	197, 249, 687
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	2 cut(s)	327, 756
FokI	GGATG	3 cut(s)	322, 537, 637
Fsp4HI	GCNGC	2 cut(s)	327, 756
FspBI	CTAG	2 cut(s)	69, 651
GluI	GCNGC	2 cut(s)	327, 756
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	155, 167
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	201, 253, 691
HinfI	GANTC	1 cut(s)	628
HpaII	CCGG	2 cut(s)	155, 167
HphI	GGTGA	3 cut(s)	100, 251, 416
Hpy166II	GTNNAC	2 cut(s)	215, 386
Hpy188I	TCNGA	4 cut(s)	22, 34, 358, 769
Hpy188III	TCNNGA	4 cut(s)	575, 590, 651, 713
Hpy8I	GTNNAC	2 cut(s)	215, 386
HpyAV	CCTTC	2 cut(s)	226, 303
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	5 cut(s)	97, 268, 307, 516, 776
HpyF3I	CTNAG	2 cut(s)	357, 797
HpySE526I	ACGT	5 cut(s)	97, 268, 307, 516, 776
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	201, 253, 691
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
LguI	GCTCTTC	1 cut(s)	357
LpnPI	CCDG	9 cut(s)	168, 180, 186, 276, 394, 676, 698, 715, 765
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	166, 291
MaeI	CTAG	2 cut(s)	69, 651
MaeII	ACGT	5 cut(s)	97, 268, 307, 516, 776
MaeIII	GTNAC	8 cut(s)	58, 71, 157, 225, 257, 474, 638, 683
MalI	GATC	9 cut(s)	24, 314, 351, 555, 581, 588, 711, 741, 795
MboI	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
MboII	GAAGA	9 cut(s)	56, 102, 120, 123, 129, 374, 563, 728, 756
MflI	RGATCY	3 cut(s)	349, 553, 793
MluCI	AATT	2 cut(s)	28, 218
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	2 cut(s)	155, 167
NdeII	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
NlaIII	CATG	3 cut(s)	201, 253, 691
NlaIV	GGNNCC	2 cut(s)	171, 351
NmuCI	GTSAC	5 cut(s)	157, 225, 257, 474, 683
PaeR7I	CTCGAG	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	628
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	328, 757
Psp1406I	AACGTT	1 cut(s)	776
PspN4I	GGNNCC	2 cut(s)	171, 351
PspPI	GGNCC	1 cut(s)	169
PspXI	VCTCGAGB	1 cut(s)	340
PsrI	GAACNNNNNNTAC	2 cut(s)	631, 663
PsuI	RGATCY	3 cut(s)	349, 553, 793
RsaI	GTAC	2 cut(s)	100, 202
RsaNI	GTAC	2 cut(s)	99, 201
RseI	CAYNNNNRTG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	2 cut(s)	327, 756
Sau3AI	GATC	9 cut(s)	22, 312, 349, 553, 579, 586, 709, 739, 793
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	9 cut(s)	100, 271, 310, 519, 571, 685, 779, 784, 803
SfaNI	GCATC	2 cut(s)	166, 291
Sfr274I	CTCGAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	169
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	340, 573
SmoI	CTYRAG	2 cut(s)	340, 573
Sse9I	AATT	2 cut(s)	28, 218
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	2 cut(s)	492, 755
SspMI	CTAG	2 cut(s)	69, 651
StuI	AGGCCT	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	143, 789
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	5 cut(s)	100, 271, 310, 519, 779
TaqI	TCGA	3 cut(s)	5, 341, 634
TasI	AATT	2 cut(s)	28, 218
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	3 cut(s)	234, 278, 670
TseFI	GTSAC	5 cut(s)	157, 225, 257, 474, 683
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	5 cut(s)	157, 225, 257, 474, 683
TspDTI	ATGAA	1 cut(s)	641
TspRI	CASTG	3 cut(s)	234, 278, 670
VpaK11BI	GGWCC	1 cut(s)	169
XbaI	TCTAGA	1 cut(s)	650
XhoI	CTCGAG	1 cut(s)	340
XspI	CTAG	2 cut(s)	69, 651
ZraI	GACGTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.