Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013611.1

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Reverse (-)

24935 .. 26029

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013611.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgcacaatcccgacctcgatttccgacaccccactccaccaccaccaccaacgccaccgccattaccaactcaaacccaccactacccaaacgtcgtcgtttccgtccctaccgccgtccctttcgcttcttcatcttctacttccttcaacttccccgagagcaacaatgccccacaaccccaccagcaaaaccctcgaaagaagcgctccaaactgatgaggcccgacgccgacaacccggccaagaggcccaagtccgccaagaaacccgacccggccgctcccaagatcaccacgccgtgcagcgagtgcggcaggaagttctggtcatggaaggctctctttggccacatgcgctgccaccctgaacgccactggcgcggaatccaacctccgccggatttccaaccagccggttcgccgccgaacccggtccttccggacttggagctctcaatgagcgaagacgaccacgacgccgcctctagcttgttgattcttgccagcggcaccgaccaaactcaactccctggtactagttcacaaggccttcgagaaaacgactccggcggctgtcgtttcgagtgttccagttgcaagaaagtgttcgggtcccaccaggccttgggaggccatagggcgagccacaagaacgtgaagggttgtttcgcgattacaaagagtgatgtggaggtggatgaggagcttcatcatcatcctcatcatcaacttcagcatggtaatgtagtaatggctagtcgtagctgtggcgttgatgatagtaatgttgatgatgtgacggaggagaataacaagatggttatggcggtcgagtcggggcaccagtgtagcatttgctggagggtgttttcgagtgggcaagctttgggcgggcacaagaggtgtcattgggagaaaggggaagaggcgtcagtggtgatgacacaacttgggatcagcaacaacactaattctggtgggctggacttgaacttgcctgctgctgctgctcctgcttctgcaactgaagatgatcagtcgtcttcgtatacgtctccaggccgggctttggatttgaggttgggtctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

364

Amino Acids

39.46

Weight (kDa)

6.59

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	512, 843
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccBSI	CCGCTC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	1052
AccII	CGCG	2 cut(s)	384, 674
AccIII	TCCGGA	1 cut(s)	442
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	3 cut(s)	243, 279, 349
AcuI	CTGAAG	2 cut(s)	719, 1050
AcyI	GRCGYC	3 cut(s)	231, 480, 932
AdeI	CACNNNGTG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	538
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	628, 1072
AgsI	TTSAA	2 cut(s)	151, 994
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	3 cut(s)	532, 621, 1060
AluBI	AGCT	5 cut(s)	454, 492, 709, 768, 887
AluI	AGCT	5 cut(s)	454, 492, 709, 768, 887
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	1062
AlwI	GGATC	1 cut(s)	965
Ama87I	CYCGRG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	442
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	9 cut(s)	224, 243, 251, 279, 349, 550, 624, 634, 1063
ApeKI	GCWGC	5 cut(s)	306, 360, 1004, 1007, 1010
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	3 cut(s)	210, 360, 384
AspS9I	GGNCC	4 cut(s)	225, 252, 436, 615
AsuC2I	CCSGG	4 cut(s)	242, 278, 434, 1067
AsuHPI	GGTGA	2 cut(s)	286, 952
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	436, 615
BaeGI	GKGCMC	2 cut(s)	846, 900
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	2 cut(s)	512, 843
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	474, 1038
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	318, 347, 991, 994, 997
BccI	CCATC	1 cut(s)	814
BceAI	ACGGC	2 cut(s)	101, 286
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	3 cut(s)	534, 623, 1062
BclI	TGATCA	1 cut(s)	1036
BcnI	CCSGG	4 cut(s)	242, 278, 434, 1067
BcoDI	GTCTC	1 cut(s)	1062
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	3 cut(s)	489, 540, 759
BfoI	RGCGCY	1 cut(s)	211
Bme1390I	CCNGG	7 cut(s)	242, 278, 434, 534, 623, 1062, 1067
Bme18I	GGWCC	2 cut(s)	436, 615
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	4 cut(s)	225, 252, 436, 615
BmiI	GGNNCC	4 cut(s)	514, 616, 617, 845
BmrFI	CCNGG	7 cut(s)	242, 278, 434, 534, 623, 1062, 1067
BpiI	GAAGAC	2 cut(s)	474, 1038
BpmI	CTGGAG	2 cut(s)	883, 1044
BpuMI	CCSGG	4 cut(s)	242, 278, 434, 1067
BsaHI	GRCGYC	3 cut(s)	231, 480, 932
BsaJI	CCNNGG	2 cut(s)	532, 627
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 1072
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	383, 594, 847
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	3 cut(s)	534, 623, 1062
BseDI	CCNNGG	2 cut(s)	532, 627
BseGI	GGATG	2 cut(s)	706, 718
BseLI	CCNNNNNNNGG	2 cut(s)	628, 1072
BseNI	ACTGG	3 cut(s)	383, 594, 847
BseRI	GAGGAG	2 cut(s)	719, 821
BseSI	GKGCMC	2 cut(s)	846, 900
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	5 cut(s)	318, 347, 991, 994, 997
BsgI	GTGCAG	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	384, 674
Bsh1285I	CGRYCG	2 cut(s)	282, 834
BshFI	GGCC	9 cut(s)	226, 245, 253, 281, 351, 552, 626, 636, 1065
BshNI	GGYRCC	2 cut(s)	512, 843
BsiEI	CGRYCG	2 cut(s)	282, 834
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	8 cut(s)	242, 278, 401, 417, 434, 443, 570, 1066
BslFI	GGGAC	3 cut(s)	92, 104, 601
BslI	CCNNNNNNNGG	2 cut(s)	628, 1072
BsmAI	GTCTC	1 cut(s)	1062
BsmBI	CGTCTC	1 cut(s)	1062
BsmFI	GGGAC	3 cut(s)	92, 104, 601
BsnI	GGCC	9 cut(s)	226, 245, 253, 281, 351, 552, 626, 636, 1065
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	456, 846, 900
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	291, 957, 1036
Bsp68I	TCGCGA	1 cut(s)	674
BspANI	GGCC	9 cut(s)	226, 245, 253, 281, 351, 552, 626, 636, 1065
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	384, 674
BspLI	GGNNCC	4 cut(s)	514, 616, 617, 845
BspPI	GGATC	1 cut(s)	965
BspT107I	GGYRCC	2 cut(s)	512, 843
BsrBI	CCGCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	383, 594, 847
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	532, 627
BssMI	GATC	3 cut(s)	291, 957, 1036
BssNAI	GTATAC	1 cut(s)	1053
BssNI	GRCGYC	3 cut(s)	231, 480, 932
BssT1I	CCWWGG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	1053
Bst2UI	CCWGG	3 cut(s)	534, 623, 1062
Bst6I	CTCTTC	1 cut(s)	921
BstACI	GRCGYC	3 cut(s)	231, 480, 932
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	5 cut(s)	508, 646, 885, 896, 1002
BstF5I	GGATG	2 cut(s)	706, 718
BstFNI	CGCG	2 cut(s)	384, 674
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	3 cut(s)	210, 360, 384
BstKTI	GATC	3 cut(s)	294, 960, 1039
BstMAI	GTCTC	1 cut(s)	1062
BstMBI	GATC	3 cut(s)	291, 957, 1036
BstMCI	CGRYCG	2 cut(s)	282, 834
BstMWI	GCNNNNNNNGC	6 cut(s)	312, 315, 357, 381, 1010, 1016
BstNI	CCWGG	3 cut(s)	534, 623, 1062
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	7 cut(s)	240, 276, 432, 532, 621, 1060, 1065
BstSLI	GKGCMC	2 cut(s)	846, 900
BstUI	CGCG	2 cut(s)	384, 674
BstV1I	GCAGC	5 cut(s)	318, 347, 991, 994, 997
BstV2I	GAAGAC	2 cut(s)	474, 1038
BstZ17I	GTATAC	1 cut(s)	1053
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	9 cut(s)	226, 245, 253, 281, 351, 552, 626, 636, 1065
BtsCI	GGATG	2 cut(s)	706, 718
BtsIMutI	CAGTG	3 cut(s)	376, 854, 942
BtuMI	TCGCGA	1 cut(s)	674
Cac8I	GCNNGC	5 cut(s)	508, 646, 885, 896, 1002
CfoI	GCGC	3 cut(s)	210, 360, 384
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	4 cut(s)	225, 252, 436, 615
CseI	GACGC	3 cut(s)	239, 488, 921
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	3 cut(s)	333, 355, 740
CviQI	GTAC	1 cut(s)	537
DpnI	GATC	3 cut(s)	293, 959, 1038
DpnII	GATC	3 cut(s)	291, 957, 1036
DraIII	CACNNNGTG	1 cut(s)	303
EaeI	YGGCCR	3 cut(s)	243, 279, 349
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
EciI	GGCGGA	2 cut(s)	250, 387
Ecl136II	GAGCTC	1 cut(s)	454
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	627
Eco147I	AGGCCT	2 cut(s)	552, 626
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	436, 615
Eco47III	AGCGCT	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	719, 1050
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	532, 621, 1060
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	1062
FaeI	CATG	3 cut(s)	336, 358, 743
FaiI	YATR	6 cut(s)	334, 356, 639, 741, 827, 1053
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	3 cut(s)	92, 104, 601
FatI	CATG	3 cut(s)	332, 354, 739
FauI	CCCGC	1 cut(s)	887
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1052
FokI	GGATG	2 cut(s)	705, 713
FriOI	GRGCYC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	489, 540, 759
GlaI	GCGC	3 cut(s)	209, 359, 383
GsuI	CTGGAG	2 cut(s)	883, 1044
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	9 cut(s)	226, 245, 253, 281, 351, 552, 626, 636, 1065
HapII	CCGG	8 cut(s)	242, 278, 401, 417, 434, 443, 570, 1066
HgaI	GACGC	3 cut(s)	239, 488, 921
HhaI	GCGC	3 cut(s)	210, 360, 384
Hin1I	GRCGYC	3 cut(s)	231, 480, 932
Hin1II	CATG	3 cut(s)	336, 358, 743
Hin6I	GCGC	3 cut(s)	208, 358, 382
HinP1I	GCGC	3 cut(s)	208, 358, 382
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	4 cut(s)	387, 499, 566, 836
HpaII	CCGG	8 cut(s)	242, 278, 401, 417, 434, 443, 570, 1066
HphI	GGTGA	2 cut(s)	286, 952
Hpy166II	GTNNAC	2 cut(s)	545, 1053
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	4 cut(s)	11, 443, 557, 673
Hpy8I	GTNNAC	2 cut(s)	545, 1053
Hpy99I	CGWCG	4 cut(s)	98, 101, 233, 482
HpyAV	CCTTC	5 cut(s)	157, 331, 449, 563, 655
HpyCH4IV	ACGT	3 cut(s)	93, 657, 1055
HpyCH4V	TGCA	4 cut(s)	4, 306, 600, 1025
HpyF10VI	GCNNNNNNNGC	6 cut(s)	312, 315, 357, 381, 1010, 1016
HpySE526I	ACGT	3 cut(s)	93, 657, 1055
Hsp92I	GRCGYC	3 cut(s)	231, 480, 932
Hsp92II	CATG	3 cut(s)	336, 358, 743
HspAI	GCGC	3 cut(s)	208, 358, 382
KflI	GGGWCCC	1 cut(s)	615
Kpn2I	TCCGGA	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	3 cut(s)	291, 957, 1036
LmnI	GCTCC	5 cut(s)	215, 289, 451, 706, 1018
Lsp1109I	GCAGC	5 cut(s)	318, 347, 991, 994, 997
MaeI	CTAG	3 cut(s)	489, 540, 759
MaeII	ACGT	3 cut(s)	93, 657, 1055
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	3 cut(s)	293, 959, 1038
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	3 cut(s)	291, 957, 1036
MboII	GAAGA	6 cut(s)	123, 129, 479, 938, 1038, 1043
MhlI	GDGCHC	3 cut(s)	456, 846, 900
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	1 cut(s)	973
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	560, 845
MmeI	TCCRAC	3 cut(s)	49, 415, 433
Mox20I	TGGCCA	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	8 cut(s)	242, 278, 401, 417, 434, 443, 570, 1066
MspR9I	CCNGG	7 cut(s)	242, 278, 434, 534, 623, 1062, 1067
MvaI	CCWGG	3 cut(s)	534, 623, 1062
MvnI	CGCG	2 cut(s)	384, 674
MwoI	GCNNNNNNNGC	6 cut(s)	312, 315, 357, 381, 1010, 1016
NciI	CCSGG	4 cut(s)	242, 278, 434, 1067
NdeII	GATC	3 cut(s)	291, 957, 1036
NlaIII	CATG	3 cut(s)	336, 358, 743
NlaIV	GGNNCC	4 cut(s)	514, 616, 617, 845
NmuCI	GTSAC	1 cut(s)	799
NruI	TCGCGA	1 cut(s)	674
NspI	RCATGY	1 cut(s)	358
PceI	AGGCCT	2 cut(s)	552, 626
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	387, 499
PflMI	CCANNNNNTGG	1 cut(s)	628
PleI	GAGTC	2 cut(s)	560, 844
PpsI	GAGTC	2 cut(s)	560, 844
PpuMI	RGGWCCY	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	532, 621, 1060
PspGI	CCWGG	3 cut(s)	532, 621, 1060
PspN4I	GGNNCC	4 cut(s)	514, 616, 617, 845
PspPI	GGNCC	4 cut(s)	225, 252, 436, 615
PspPPI	RGGWCCY	1 cut(s)	615
RruI	TCGCGA	1 cut(s)	674
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	291, 957, 1036
Sau96I	GGNCC	4 cut(s)	225, 252, 436, 615
SchI	GAGTC	2 cut(s)	560, 845
ScrFI	CCNGG	7 cut(s)	242, 278, 434, 534, 623, 1062, 1067
SduI	GDGCHC	3 cut(s)	456, 846, 900
SinI	GGWCC	2 cut(s)	436, 615
SmiMI	CAYNNNNRTG	1 cut(s)	744
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	1 cut(s)	973
SseBI	AGGCCT	2 cut(s)	552, 626
SspMI	CTAG	3 cut(s)	489, 540, 759
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	2 cut(s)	552, 626
StyD4I	CCNGG	7 cut(s)	240, 276, 432, 532, 621, 1060, 1065
StyI	CCWWGG	1 cut(s)	627
TaiI	ACGT	3 cut(s)	96, 660, 1058
TaqI	TCGA	6 cut(s)	18, 199, 556, 585, 834, 875
TasI	AATT	1 cut(s)	973
TauI	GCSGC	6 cut(s)	284, 318, 427, 485, 513, 576
TfiI	GAWTC	2 cut(s)	387, 499
TscAI	CASTG	3 cut(s)	383, 854, 942
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	5 cut(s)	306, 360, 1004, 1007, 1010
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	123, 701
TspGWI	ACGGA	2 cut(s)	94, 818
TspRI	CASTG	3 cut(s)	383, 854, 942
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	436, 615
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	1052
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	3 cut(s)	489, 540, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.