Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Forward (+)

17957865 .. 17958894

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTTGCTAGTGGGTGCACTAATGGGACAAGTAATGAGATCACTACTCAGAGTATTAGTACAAGTACTTTTCAGGGTGCTCAAGAGGTGTTTGATGGTGGTAATGGGAGGTTTGAGTGTTCAAGTTGCAAGAAAGTATTTGGGTCCCACCAGGCTTTGGGGGGCCACAGGGCAAGCCACAAGAATGTGAAGGGCTGTTTTGCAATTACAAGGAGTGATGGTGAGGTTGATCAGGATCATCATCACAATGGTGATGGTGAACGGGATGATGAGGATGATGATGTGATGGAGGAGAATAATAAGATGGTTATGGTGTTGGGAGGATCAGGGCACAAGTGTAGTGTTTGTTGGAGGGTTTTTTCAAGTGGTCAAGCTTTGGGAGGGCACATGAGGTGTCATTGGGACAAAGGGGATGAGCCATCATCATCATCCATGATGATGACCCAATTAGGGCTAAGTCAGCAGCACCAGCAGCCTAGTGGGATTTCAAAGGAAGGCCATTCTGGTGGATTGGATTTGAATTTGCCTGCAGCTTCTCATATTGAAGATGCTCAATCCTCTTCTTCAGGCCTCATCACTTTGGATTTAAGGTTGGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

201

Amino Acids

21.29

Weight (kDa)

5.43

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AclWI	GGATC	2 cut(s)	243, 331
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	61, 67
AfiI	CCNNNNNNNGG	2 cut(s)	157, 450
AgsI	TTSAA	5 cut(s)	123, 363, 489, 520, 545
AjnI	CCWGG	1 cut(s)	150
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	374, 533
AluI	AGCT	2 cut(s)	374, 533
Alw21I	GWGCWC	2 cut(s)	20, 82
Alw44I	GTGCAC	1 cut(s)	16
AlwI	GGATC	2 cut(s)	243, 331
AoxI	GGCC	3 cut(s)	163, 496, 568
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	463, 472, 530
ApoI	RAATTY	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	144, 163
AsuHPI	GGTGA	3 cut(s)	233, 263, 269
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	3 cut(s)	20, 333, 387
Bbv12I	GWGCWC	2 cut(s)	20, 82
BbvI	GCAGC	3 cut(s)	475, 484, 542
BccI	CCATC	6 cut(s)	89, 212, 248, 280, 298, 427
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	2 cut(s)	9, 477
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	3 cut(s)	464, 473, 531
BlsI	GCNGC	3 cut(s)	465, 474, 532
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	144, 163
BmiI	GGNNCC	3 cut(s)	145, 146, 164
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	66
BsaBI	GATNNNNATC	2 cut(s)	234, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 450
Bse8I	GATNNNNATC	2 cut(s)	234, 240
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	4 cut(s)	271, 280, 418, 428
BseJI	GATNNNNATC	2 cut(s)	234, 240
BseLI	CCNNNNNNNGG	2 cut(s)	157, 450
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	3 cut(s)	20, 333, 387
BseXI	GCAGC	3 cut(s)	475, 484, 542
BshFI	GGCC	3 cut(s)	165, 498, 570
BsiHKAI	GWGCWC	2 cut(s)	20, 82
BslFI	GGGAC	3 cut(s)	40, 130, 416
BslI	CCNNNNNNNGG	2 cut(s)	157, 450
BsmFI	GGGAC	3 cut(s)	40, 130, 416
BsnI	GGCC	3 cut(s)	165, 498, 570
Bsp1286I	GDGCHC	4 cut(s)	20, 82, 333, 387
Bsp143I	GATC	4 cut(s)	39, 229, 235, 323
BspANI	GGCC	3 cut(s)	165, 498, 570
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	145, 146, 164
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	2 cut(s)	243, 331
BssMI	GATC	4 cut(s)	39, 229, 235, 323
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	565
BstC8I	GCNNGC	3 cut(s)	6, 175, 528
BstDEI	CTNAG	2 cut(s)	48, 455
BstF5I	GGATG	4 cut(s)	271, 280, 418, 428
BstKTI	GATC	4 cut(s)	42, 232, 238, 326
BstMBI	GATC	4 cut(s)	39, 229, 235, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	460, 469, 472
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	3 cut(s)	20, 333, 387
BstV1I	GCAGC	3 cut(s)	475, 484, 542
BstXI	CCANNNNNNTGG	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	165, 498, 570
BtsCI	GGATG	4 cut(s)	271, 280, 418, 428
Cac8I	GCNNGC	3 cut(s)	6, 175, 528
Cfr13I	GGNCC	2 cut(s)	144, 163
Csp6I	GTAC	2 cut(s)	60, 66
CviAII	CATG	2 cut(s)	388, 433
CviQI	GTAC	2 cut(s)	60, 66
DdeI	CTNAG	2 cut(s)	48, 455
DpnI	GATC	4 cut(s)	41, 231, 237, 325
DpnII	GATC	4 cut(s)	39, 229, 235, 323
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
Eco147I	AGGCCT	1 cut(s)	570
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	391, 436
FaiI	YATR	4 cut(s)	311, 389, 434, 540
FaqI	GGGAC	3 cut(s)	40, 130, 416
FatI	CATG	2 cut(s)	387, 432
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	464, 473, 531
FokI	GGATG	4 cut(s)	278, 287, 415, 425
Fsp4HI	GCNGC	3 cut(s)	464, 473, 531
FspBI	CTAG	2 cut(s)	9, 477
GluI	GCNGC	3 cut(s)	464, 473, 531
HaeIII	GGCC	3 cut(s)	165, 498, 570
Hin1II	CATG	2 cut(s)	391, 436
HindIII	AAGCTT	1 cut(s)	372
HphI	GGTGA	3 cut(s)	233, 263, 269
Hpy166II	GTNNAC	2 cut(s)	18, 260
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	2 cut(s)	83, 233
Hpy8I	GTNNAC	2 cut(s)	18, 260
HpyAV	CCTTC	2 cut(s)	184, 488
HpyCH4V	TGCA	4 cut(s)	18, 129, 203, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	460, 469, 472
HpyF3I	CTNAG	2 cut(s)	48, 455
Hsp92II	CATG	2 cut(s)	391, 436
KflI	GGGWCCC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	39, 229, 235, 323
Lsp1109I	GCAGC	3 cut(s)	475, 484, 542
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	9, 477
MalI	GATC	4 cut(s)	41, 231, 237, 325
MboI	GATC	4 cut(s)	39, 229, 235, 323
MboII	GAAGA	3 cut(s)	552, 555, 557
MhlI	GDGCHC	4 cut(s)	20, 82, 333, 387
MluCI	AATT	3 cut(s)	204, 446, 520
MmeI	TCCRAC	1 cut(s)	329
MseI	TTAA	1 cut(s)	587
MslI	CAYNNNNRTG	5 cut(s)	183, 246, 249, 437, 504
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	460, 469, 472
NdeII	GATC	4 cut(s)	39, 229, 235, 323
NlaIII	CATG	2 cut(s)	391, 436
NlaIV	GGNNCC	3 cut(s)	145, 146, 164
OliI	CACNNNNGTG	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	570
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	465, 474, 532
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	145, 146, 164
PspPI	GGNCC	2 cut(s)	144, 163
PspPPI	RGGWCCY	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	532
RsaI	GTAC	2 cut(s)	61, 67
RsaNI	GTAC	2 cut(s)	60, 66
RseI	CAYNNNNRTG	5 cut(s)	183, 246, 249, 437, 504
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	3 cut(s)	464, 473, 531
Sau3AI	GATC	4 cut(s)	39, 229, 235, 323
Sau96I	GGNCC	2 cut(s)	144, 163
ScaI	AGTACT	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	4 cut(s)	20, 82, 333, 387
SetI	ASST	7 cut(s)	90, 113, 228, 376, 395, 535, 593
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	5 cut(s)	183, 246, 249, 437, 504
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	204, 446, 520
SseBI	AGGCCT	1 cut(s)	570
SspMI	CTAG	2 cut(s)	9, 477
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	150
TasI	AATT	3 cut(s)	204, 446, 520
TatI	WGTACW	2 cut(s)	59, 65
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TseI	GCWGC	3 cut(s)	463, 472, 530
Van91I	CCANNNNNTGG	1 cut(s)	157
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	2 cut(s)	9, 477
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.