Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Forward (+)

42879108 .. 42885855

Gene Structure 6748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGGCCCGACGCCGACAACCCTGCCAAGCGGCCCAAGTCCGCCAAGAAACCCGACCCGGCCGCTCCCAAGATCACCACGCCGTGCAGCGAGTGCGGCAGGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGCCACCCTGAACGCCACTGGCGCGGAATCCAACCTCCGCCGGATTTCCAACCAGCCGGTTCGCCGCCGAACCCGGTCCTTCCCGACTTGGAGCTCTCAATGAGTGAAGACGACCACGACGCCGCCTCTAGCTTGTTGATTCTTGCCAGCGGCACCGACCAAACTCAACTCCCTGGTACTAGTTCACAAGGCCTTCGAGAAAACGACTCCGGCGGCTGTCGTTTCGAGTGTTCCAGTTGCAAGAAAGTGTTCGGGTCCCACCAGGCCTTGGGAGGACATAGGGCGAGCCACAAGAACGTGAAGGGTTGTTTCGCGATTACAAAGAGTGATGTGGAGGTGGATGAGGAGCTTCATCATCATCCTCATCATCATCTTCAGCATGACAAAAAACTCGAAGAGGAACTCAGGTTTCCTGTTGTTGCTTCAGATGGGGGTCTTCACAGAGAAGAAACTCAAAAACTGATCTTATCCCACAGAAGAGCCAACTGCAAAGTCCACGACGATTCTTACTCATATGATCGAGGCCAAACAGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

226

Amino Acids

25.14

Weight (kDa)

6.78

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	27 - 51	1.3e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	121 - 145	4.1e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	65
AccII	CGCG	2 cut(s)	165, 455
AcoI	YGGCCR	2 cut(s)	60, 130
AcuI	CTGAAG	2 cut(s)	500, 549
AcyI	GRCGYC	2 cut(s)	12, 261
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	409
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	313, 402
AluBI	AGCT	3 cut(s)	235, 273, 490
AluI	AGCT	3 cut(s)	235, 273, 490
Alw21I	GWGCWC	1 cut(s)	237
AoxI	GGCC	7 cut(s)	5, 32, 60, 130, 331, 405, 664
ApeKI	GCWGC	2 cut(s)	87, 141
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	141, 165
AspS9I	GGNCC	4 cut(s)	6, 33, 217, 396
AsuC2I	CCSGG	2 cut(s)	59, 215
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	217, 396
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	255, 569
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	99, 128
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	2 cut(s)	315, 404
BcnI	CCSGG	2 cut(s)	59, 215
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	270, 321
BisI	GCNGC	9 cut(s)	32, 63, 88, 97, 142, 206, 264, 292, 355
BlsI	GCNGC	9 cut(s)	33, 64, 89, 98, 143, 207, 265, 293, 356
Bme1390I	CCNGG	4 cut(s)	59, 215, 315, 404
Bme18I	GGWCC	2 cut(s)	217, 396
BmgT120I	GGNCC	4 cut(s)	6, 33, 217, 396
BmiI	GGNNCC	3 cut(s)	295, 397, 398
BmrFI	CCNGG	4 cut(s)	59, 215, 315, 404
BpiI	GAAGAC	2 cut(s)	255, 569
BpuMI	CCSGG	2 cut(s)	59, 215
BsaHI	GRCGYC	2 cut(s)	12, 261
BsaJI	CCNNGG	2 cut(s)	313, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	164, 375
BseBI	CCWGG	2 cut(s)	315, 404
BseDI	CCNNGG	2 cut(s)	313, 408
BseGI	GGATG	2 cut(s)	487, 499
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	559
BseNI	ACTGG	2 cut(s)	164, 375
BseRI	GAGGAG	1 cut(s)	500
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	99, 128
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	2 cut(s)	165, 455
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	7 cut(s)	7, 34, 62, 132, 333, 407, 666
BshNI	GGYRCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	5 cut(s)	59, 182, 198, 215, 351
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	7 cut(s)	7, 34, 62, 132, 333, 407, 666
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	72, 603, 658
Bsp68I	TCGCGA	1 cut(s)	455
BspANI	GGCC	7 cut(s)	7, 34, 62, 132, 333, 407, 666
BspCNI	CTCAG	1 cut(s)	558
BspFNI	CGCG	2 cut(s)	165, 455
BspLI	GGNNCC	3 cut(s)	295, 397, 398
BspQI	GCTCTTC	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	164, 375
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	313, 408
BssMI	GATC	3 cut(s)	72, 603, 658
BssNI	GRCGYC	2 cut(s)	12, 261
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	315, 404
Bst6I	CTCTTC	3 cut(s)	131, 531, 613
BstACI	GRCGYC	2 cut(s)	12, 261
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	289, 427
BstDEI	CTNAG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	487, 499
BstFNI	CGCG	2 cut(s)	165, 455
BstHHI	GCGC	2 cut(s)	141, 165
BstKTI	GATC	3 cut(s)	75, 606, 661
BstMBI	GATC	3 cut(s)	72, 603, 658
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 96, 138, 162
BstNI	CCWGG	2 cut(s)	315, 404
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	4 cut(s)	57, 213, 313, 402
BstUI	CGCG	2 cut(s)	165, 455
BstV1I	GCAGC	2 cut(s)	99, 128
BstV2I	GAAGAC	2 cut(s)	255, 569
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	7 cut(s)	7, 34, 62, 132, 333, 407, 666
BtsCI	GGATG	2 cut(s)	487, 499
BtsIMutI	CAGTG	1 cut(s)	157
BtuMI	TCGCGA	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	289, 427
CfoI	GCGC	2 cut(s)	141, 165
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	4 cut(s)	6, 33, 217, 396
CseI	GACGC	2 cut(s)	20, 269
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	3 cut(s)	114, 136, 521
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	3 cut(s)	74, 605, 660
DpnII	GATC	3 cut(s)	72, 603, 658
DraIII	CACNNNGTG	1 cut(s)	84
EaeI	YGGCCR	2 cut(s)	60, 130
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	131, 531, 613
EarI	CTCTTC	3 cut(s)	131, 531, 613
EciI	GGCGGA	2 cut(s)	31, 168
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	408
Eco147I	AGGCCT	2 cut(s)	333, 407
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	217, 396
Eco52I	CGGCCG	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	500, 549
EcoICRI	GAGCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	313, 402
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	117, 139, 524
FaiI	YATR	6 cut(s)	115, 137, 420, 522, 655, 657
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	3 cut(s)	113, 135, 520
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	9 cut(s)	32, 63, 88, 97, 142, 206, 264, 292, 355
FokI	GGATG	2 cut(s)	486, 494
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	9 cut(s)	32, 63, 88, 97, 142, 206, 264, 292, 355
FspBI	CTAG	2 cut(s)	270, 321
GlaI	GCGC	2 cut(s)	140, 164
GluI	GCNGC	9 cut(s)	32, 63, 88, 97, 142, 206, 264, 292, 355
HaeIII	GGCC	7 cut(s)	7, 34, 62, 132, 333, 407, 666
HapII	CCGG	5 cut(s)	59, 182, 198, 215, 351
HgaI	GACGC	2 cut(s)	20, 269
HhaI	GCGC	2 cut(s)	141, 165
Hin1I	GRCGYC	2 cut(s)	12, 261
Hin1II	CATG	3 cut(s)	117, 139, 524
Hin6I	GCGC	2 cut(s)	139, 163
HinP1I	GCGC	2 cut(s)	139, 163
HinfI	GANTC	4 cut(s)	168, 280, 347, 644
HpaII	CCGG	5 cut(s)	59, 182, 198, 215, 351
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	326, 637
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	3 cut(s)	224, 338, 454
Hpy8I	GTNNAC	2 cut(s)	326, 637
Hpy99I	CGWCG	3 cut(s)	14, 263, 644
HpyAV	CCTTC	5 cut(s)	112, 230, 344, 436, 668
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	87, 381, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 96, 138, 162
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	2 cut(s)	12, 261
Hsp92II	CATG	3 cut(s)	117, 139, 524
HspAI	GCGC	2 cut(s)	139, 163
KflI	GGGWCCC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	72, 603, 658
LguI	GCTCTTC	1 cut(s)	613
LmnI	GCTCC	3 cut(s)	70, 232, 487
Lsp1109I	GCAGC	2 cut(s)	99, 128
MaeI	CTAG	2 cut(s)	270, 321
MaeII	ACGT	1 cut(s)	438
MalI	GATC	3 cut(s)	74, 605, 660
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	3 cut(s)	72, 603, 658
MboII	GAAGA	7 cut(s)	118, 260, 506, 548, 569, 599, 630
MhlI	GDGCHC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	196, 214
MnlI	CCTC	8 cut(s)	186, 277, 407, 469, 478, 513, 532, 656
MroXI	GAANNNNTTC	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	5 cut(s)	59, 182, 198, 215, 351
MspR9I	CCNGG	4 cut(s)	59, 215, 315, 404
MvaI	CCWGG	2 cut(s)	315, 404
MvnI	CGCG	2 cut(s)	165, 455
MwoI	GCNNNNNNNGC	4 cut(s)	93, 96, 138, 162
NciI	CCSGG	2 cut(s)	59, 215
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	72, 603, 658
NlaIII	CATG	3 cut(s)	117, 139, 524
NlaIV	GGNNCC	3 cut(s)	295, 397, 398
NruI	TCGCGA	1 cut(s)	455
NspI	RCATGY	1 cut(s)	139
PceI	AGGCCT	2 cut(s)	333, 407
PciSI	GCTCTTC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	168, 280, 644
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	9 cut(s)	33, 64, 89, 98, 143, 207, 265, 293, 356
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	313, 402
PspGI	CCWGG	2 cut(s)	313, 402
PspN4I	GGNNCC	3 cut(s)	295, 397, 398
PspPI	GGNCC	4 cut(s)	6, 33, 217, 396
PspPPI	RGGWCCY	1 cut(s)	396
RruI	TCGCGA	1 cut(s)	455
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	613
SatI	GCNGC	9 cut(s)	32, 63, 88, 97, 142, 206, 264, 292, 355
Sau3AI	GATC	3 cut(s)	72, 603, 658
Sau96I	GGNCC	4 cut(s)	6, 33, 217, 396
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	4 cut(s)	59, 215, 315, 404
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	178, 237, 275, 441, 480, 492, 551
SinI	GGWCC	2 cut(s)	217, 396
SpeI	ACTAGT	1 cut(s)	320
SseBI	AGGCCT	2 cut(s)	333, 407
SspMI	CTAG	2 cut(s)	270, 321
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	2 cut(s)	333, 407
StyD4I	CCNGG	4 cut(s)	57, 213, 313, 402
StyI	CCWWGG	1 cut(s)	408
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	4 cut(s)	337, 366, 534, 661
TauI	GCSGC	7 cut(s)	34, 65, 99, 208, 266, 294, 357
TfiI	GAWTC	3 cut(s)	168, 280, 644
TscAI	CASTG	1 cut(s)	164
TseI	GCWGC	2 cut(s)	87, 141
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	217, 396
XceI	RCATGY	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	2 cut(s)	270, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.