Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Reverse (-)

22437673 .. 22438803

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1139600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAACAACACTCCCGACCTTGATTTCCGATTCCCCATATCTCCACCAACCCACCAGGACGCCGTCGTTCCCGCCGCCCCCGCCACCGCCACCGCCGCTTCTTCTTCTTCCACTTGTTTCACTGCAAGCGATAGAACCCACCAAAATCCCAGGAAGAAACGCTCCAAGCTGATCAGGCTCGACAACCCGACTGCTCCGAACAAGGTTTCGAGGCCAAAGTATGCAAAAAAGCCCGACCCGTCTGCCCCGAAGATCACGAAACCCTGCACTGAGTGCGGCAAGACGTTCTGGTCATGGAAGGCTTTGTTCGGGCACATGCGGTGCCACCCTGAGCGCCAGTGGCGGGGCATTGAACCGCCGCCAAATCTGCGGCGGCCCGTCTCGTCCAACATACCGCTGAGCGAGTTGGGATTGGCAATGGGTGAAGAGGACCACGAGGCGGCCTCGAGTTTGCTAATGCTTTCCAGTGGGATTACTTCTGGGACAAGTAATGAGATCATCATTAGTACTGCCGCTACTCAGAGTGTGAGTAATACTAATCTCCAAGGTGCACTAGAGGTGTTTGATGGTTGTAATAGTAACAACAGTGGTAGGTTTGAGTGCTCGAGTTGTAAGAAAGTGTTTGGATCCCACCAGGCGTTGGGGGGCCACAGGGCAAGCCACAAGAATGTGAAGGGCTGTTTTGCAATTACGAGAAGCGATGGGGAGGTTGATCAGGATCATCATCACCATAATGGAGATGGTGGTGGTGATGATGGTGATGGTGATGGTGATGAGGATGTGATGGATGAGAATCACATGGACTTGGGATCATCATTAGGGCACAAGTGCAGTGTTTGCGGGAGGGTCTTTTCAAGTGGGCAGGCATTGGGAGGGCACATGAGATGTCACTGGGACAAAGGGGATGAGACCCAATTAGGGTTCGGGTTTGAGCTAGGGTTGGGGTTCAACCTGCAGCATCCGTGTGAAACTTCAAAAGGATTATTCTTAGGTCAAAATTCTGGTGCTGGTGGGGGGTTGGACTTGAATTTGCCTGCTGCTGCTGCTGCTTCTGCTTCTCACACTACTGAAGATGATCATCAGCACTACTCTTCTTCTGGACTCACTTTGGATTTAAGGTTGGGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

377

Amino Acids

40.06

Weight (kDa)

6.19

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	89 - 111	2.3e-07	C2H2-type zinc finger
zf-C2H2_6	PF13912	198 - 222	8e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	275 - 299	3.9e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
Acc36I	ACCTGC	1 cut(s)	960
AccB1I	GGYRCC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	640
AclWI	GGATC	4 cut(s)	621, 634, 726, 817
AcsI	RAATTY	2 cut(s)	997, 1027
AcuI	CTGAAG	1 cut(s)	1089
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	4 cut(s)	343, 439, 640, 918
AgsI	TTSAA	5 cut(s)	353, 855, 949, 975, 1027
AjnI	CCWGG	3 cut(s)	54, 149, 633
AluBI	AGCT	2 cut(s)	169, 934
AluI	AGCT	2 cut(s)	169, 934
Alw21I	GWGCWC	2 cut(s)	553, 605
Alw26I	GTCTC	2 cut(s)	385, 902
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	4 cut(s)	621, 634, 726, 817
Ama87I	CYCGRG	2 cut(s)	445, 604
AoxI	GGCC	4 cut(s)	212, 374, 441, 646
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	5 cut(s)	955, 1037, 1040, 1043, 1046
ApoI	RAATTY	2 cut(s)	997, 1027
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	3 cut(s)	375, 430, 646
AsuHPI	GGTGA	6 cut(s)	434, 719, 761, 770, 776, 782
AvaI	CYCGRG	2 cut(s)	445, 604
AvaII	GGWCC	1 cut(s)	430
BaeGI	GKGCMC	4 cut(s)	315, 553, 825, 879
BamHI	GGATCC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	321
BauI	CACGAG	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	553, 605
BbvI	GCAGC	5 cut(s)	967, 1024, 1027, 1030, 1033
BccI	CCATC	7 cut(s)	560, 695, 734, 749, 755, 761, 778
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	3 cut(s)	56, 151, 635
BclI	TGATCA	3 cut(s)	171, 712, 1075
BcoDI	GTCTC	2 cut(s)	385, 902
BfaI	CTAG	2 cut(s)	554, 935
BfmI	CTRYAG	1 cut(s)	953
BfoI	RGCGCY	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	960
BlpI	GCTNAGC	1 cut(s)	398
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	56, 151, 635
Bme18I	GGWCC	1 cut(s)	430
BmeT110I	CYCGRG	2 cut(s)	445, 604
BmgT120I	GGNCC	3 cut(s)	375, 430, 646
BmiI	GGNNCC	3 cut(s)	323, 628, 647
BmrFI	CCNGG	3 cut(s)	56, 151, 635
BmrI	ACTGGG	1 cut(s)	901
BmsI	GCATC	1 cut(s)	967
BmuI	ACTGGG	1 cut(s)	901
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	398
BsaBI	GATNNNNATC	4 cut(s)	717, 723, 792, 1077
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	902
BsaJI	CCNNGG	2 cut(s)	149, 544
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 439, 640, 918
Bse1I	ACTGG	3 cut(s)	337, 465, 896
Bse3DI	GCAATG	1 cut(s)	423
Bse8I	GATNNNNATC	4 cut(s)	717, 723, 792, 1077
BseBI	CCWGG	3 cut(s)	56, 151, 635
BseDI	CCNNGG	2 cut(s)	149, 544
BseGI	GGATG	4 cut(s)	784, 793, 910, 958
BseJI	GATNNNNATC	4 cut(s)	717, 723, 792, 1077
BseLI	CCNNNNNNNGG	4 cut(s)	343, 439, 640, 918
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	4 cut(s)	261, 321, 389, 533
BseNI	ACTGG	3 cut(s)	337, 465, 896
BseSI	GKGCMC	4 cut(s)	315, 553, 825, 879
BseXI	GCAGC	5 cut(s)	967, 1024, 1027, 1030, 1033
BsgI	GTGCAG	2 cut(s)	250, 850
BshFI	GGCC	4 cut(s)	214, 376, 443, 648
BshNI	GGYRCC	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	553, 605
BsiHKCI	CYCGRG	2 cut(s)	445, 604
BslFI	GGGAC	2 cut(s)	496, 908
BslI	CCNNNNNNNGG	4 cut(s)	343, 439, 640, 918
BsmAI	GTCTC	2 cut(s)	385, 902
BsmBI	CGTCTC	1 cut(s)	385
BsmFI	GGGAC	2 cut(s)	496, 908
BsnI	GGCC	4 cut(s)	214, 376, 443, 648
Bso31I	GGTCTC	1 cut(s)	902
BsoBI	CYCGRG	2 cut(s)	445, 604
Bsp1286I	GDGCHC	5 cut(s)	315, 553, 605, 825, 879
Bsp143I	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
Bsp1720I	GCTNAGC	1 cut(s)	398
BspANI	GGCC	4 cut(s)	214, 376, 443, 648
BspCNI	CTCAG	4 cut(s)	262, 322, 390, 532
BspLI	GGNNCC	3 cut(s)	323, 628, 647
BspMAI	CTGCAG	1 cut(s)	957
BspMI	ACCTGC	1 cut(s)	960
BspPI	GGATC	4 cut(s)	621, 634, 726, 817
BspT107I	GGYRCC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	902
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	337, 465, 896
BssECI	CCNNGG	2 cut(s)	149, 544
BssMI	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	544
Bst2BI	CACGAG	1 cut(s)	434
Bst2UI	CCWGG	3 cut(s)	56, 151, 635
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	2 cut(s)	420, 1096
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	273, 837
BstC8I	GCNNGC	4 cut(s)	127, 658, 864, 1035
BstDEI	CTNAG	5 cut(s)	270, 330, 398, 519, 988
BstF5I	GGATG	4 cut(s)	784, 793, 910, 958
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	8 cut(s)	174, 255, 498, 629, 715, 721, 812, 1078
BstMAI	GTCTC	2 cut(s)	385, 902
BstMBI	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
BstNI	CCWGG	3 cut(s)	56, 151, 635
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	3 cut(s)	54, 149, 633
BstSFI	CTRYAG	1 cut(s)	953
BstSLI	GKGCMC	4 cut(s)	315, 553, 825, 879
BstV1I	GCAGC	5 cut(s)	967, 1024, 1027, 1030, 1033
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
BsuRI	GGCC	4 cut(s)	214, 376, 443, 648
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	4 cut(s)	784, 793, 910, 958
BtsI	GCAGTG	2 cut(s)	120, 838
BtsIMutI	CAGTG	7 cut(s)	120, 267, 344, 472, 592, 838, 889
BveI	ACCTGC	1 cut(s)	960
Cac8I	GCNNGC	4 cut(s)	127, 658, 864, 1035
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	375, 430, 646
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	507
CviAII	CATG	4 cut(s)	294, 316, 799, 880
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	5 cut(s)	270, 330, 398, 519, 988
DpnI	GATC	8 cut(s)	173, 254, 497, 628, 714, 720, 811, 1077
DpnII	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
DraIII	CACNNNGTG	1 cut(s)	273
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	420, 1096
EarI	CTCTTC	2 cut(s)	420, 1096
Eco130I	CCWWGG	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	902
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	1089
Eco88I	CYCGRG	2 cut(s)	445, 604
EcoRII	CCWGG	3 cut(s)	54, 149, 633
EcoT14I	CCWWGG	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	4 cut(s)	297, 319, 802, 883
FaiI	YATR	8 cut(s)	38, 222, 295, 317, 392, 732, 800, 881
FaqI	GGGAC	2 cut(s)	496, 908
FatI	CATG	4 cut(s)	293, 315, 798, 879
FauI	CCCGC	4 cut(s)	79, 88, 336, 833
FbaI	TGATCA	3 cut(s)	171, 712, 1075
FokI	GGATG	4 cut(s)	791, 800, 917, 945
FspBI	CTAG	2 cut(s)	554, 935
GlaI	GCGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	214, 376, 443, 648
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	297, 319, 802, 883
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	3 cut(s)	30, 793, 1101
HphI	GGTGA	6 cut(s)	434, 719, 761, 770, 776, 782
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	3 cut(s)	29, 198, 522
Hpy188III	TCNNGA	4 cut(s)	14, 256, 716, 1098
Hpy8I	GTNNAC	1 cut(s)	551
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	292, 667
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	7 cut(s)	125, 224, 267, 551, 686, 831, 955
HpyF3I	CTNAG	5 cut(s)	270, 330, 398, 519, 988
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	297, 319, 802, 883
HspAI	GCGC	1 cut(s)	334
Ksp22I	TGATCA	3 cut(s)	171, 712, 1075
Kzo9I	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
LmnI	GCTCC	2 cut(s)	167, 199
Lsp1109I	GCAGC	5 cut(s)	967, 1024, 1027, 1030, 1033
LweI	GCATC	1 cut(s)	967
MaeI	CTAG	2 cut(s)	554, 935
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	578, 887
MalI	GATC	8 cut(s)	173, 254, 497, 628, 714, 720, 811, 1077
MboI	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
MboII	GAAGA	9 cut(s)	93, 96, 99, 166, 262, 437, 1082, 1083, 1086
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	5 cut(s)	315, 553, 605, 825, 879
MluCI	AATT	4 cut(s)	687, 914, 997, 1027
MlyI	GAGTC	1 cut(s)	1095
MmeI	TCCRAC	2 cut(s)	411, 999
MnlI	CCTC	9 cut(s)	204, 421, 430, 454, 550, 700, 769, 837, 866
MseI	TTAA	1 cut(s)	1115
MslI	CAYNNNNRTG	3 cut(s)	666, 732, 963
MspA1I	CMGCKG	1 cut(s)	397
MspR9I	CCNGG	3 cut(s)	56, 151, 635
MvaI	CCWGG	3 cut(s)	56, 151, 635
NdeII	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
NlaIII	CATG	4 cut(s)	297, 319, 802, 883
NlaIV	GGNNCC	3 cut(s)	323, 628, 647
NmuCI	GTSAC	1 cut(s)	887
NspI	RCATGY	1 cut(s)	319
PaeR7I	CTCGAG	2 cut(s)	445, 604
PfeI	GAWTC	2 cut(s)	30, 793
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	640
PleI	GAGTC	1 cut(s)	1095
PpsI	GAGTC	1 cut(s)	1095
Psp6I	CCWGG	3 cut(s)	54, 149, 633
PspGI	CCWGG	3 cut(s)	54, 149, 633
PspN4I	GGNNCC	3 cut(s)	323, 628, 647
PspPI	GGNCC	3 cut(s)	375, 430, 646
PspXI	VCTCGAGB	2 cut(s)	445, 604
PstI	CTGCAG	1 cut(s)	957
PsuI	RGATCY	1 cut(s)	626
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	3 cut(s)	666, 732, 963
SaqAI	TTAA	1 cut(s)	1115
Sau3AI	GATC	8 cut(s)	171, 252, 495, 626, 712, 718, 809, 1075
Sau96I	GGNCC	3 cut(s)	375, 430, 646
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	1 cut(s)	1095
ScrFI	CCNGG	3 cut(s)	56, 151, 635
SduI	GDGCHC	5 cut(s)	315, 553, 605, 825, 879
SfaNI	GCATC	1 cut(s)	967
SfcI	CTRYAG	1 cut(s)	953
Sfr274I	CTCGAG	2 cut(s)	445, 604
SinI	GGWCC	1 cut(s)	430
SlaI	CTCGAG	2 cut(s)	445, 604
SmiMI	CAYNNNNRTG	3 cut(s)	666, 732, 963
SmlI	CTYRAG	2 cut(s)	445, 604
SmoI	CTYRAG	2 cut(s)	445, 604
Sse9I	AATT	4 cut(s)	687, 914, 997, 1027
SspMI	CTAG	2 cut(s)	554, 935
StyD4I	CCNGG	3 cut(s)	54, 149, 633
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	4 cut(s)	180, 209, 446, 605
TasI	AATT	4 cut(s)	687, 914, 997, 1027
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	8 cut(s)	77, 98, 279, 361, 373, 376, 443, 515
TfiI	GAWTC	2 cut(s)	30, 793
Tru1I	TTAA	1 cut(s)	1115
Tru9I	TTAA	1 cut(s)	1115
TscAI	CASTG	7 cut(s)	127, 274, 344, 472, 592, 838, 896
TseFI	GTSAC	1 cut(s)	887
TseI	GCWGC	5 cut(s)	955, 1037, 1040, 1043, 1046
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	951
TspRI	CASTG	7 cut(s)	127, 274, 344, 472, 592, 838, 896
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	640
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	2 cut(s)	997, 1027
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	737
XhoI	CTCGAG	2 cut(s)	445, 604
XspI	CTAG	2 cut(s)	554, 935
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.