Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Forward (+)

43517010 .. 43518476

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG246700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCACAATCCCGACCTCGATTTCCGACACCCCACTCCACCACCACCACCAACGCCACCGCCATTACCAACTCAAACCCACCACTACCCAAACGTCGTCGTTTCCGTCCCTACCGCCGTCCCTTTCGCTCCTTCATCTTCTACTTCCTTCAACTTCCCCGAGAGCAACAATGCCCCACAACCCCACCAGCAAAACCCTCGAAAGAAGCGCTCCAAACTGATGAGGCCCGACGCCGACAACCCGGCCAAGCGGCCCAAGTCGGCCAAGAAACCCGACCCGGCCGCTCCCAAGATCACCACGCCGTGCAGCGAGTGCGGCAGGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGCCACCCTGAACGGCACTGGCGCGGAATCCAACCTCCGCCGGATTTCCAACCAGCCGGGTCGCCGCCGAACCCGGTCCTTCCCGACTTGGAGCTCTCAATGAGCGAAGACGACCACGACGCCGCCTCTAGCTTGTTGATTCTTGCCAGCGGCACCGACCAAACTCAACTCCCTGGTACTAGTTCACAAGGCCTTCGAGAAAACGACTCCGGCGGCTGTCGTTTCGAGTGTTCCAGTTGCAAGAAAGTGTTCGGGTCCCACCAGGCCTTGGGAGGCCATAGGGCGAGCCACAAGAACGTGAAGGGTTGTTTCGCGATTACAAAGAGTGATGTGGAGGTGGATGAGGAGCTTCATCATCATCCTCATCATCAACTTCAGCATGGTAATGTAGTAATGGCTAGTCGTAGCTGTGGCGTTGATGATAGTAATGTTGATGATGTGACGGAGGAGAATAACAAGATGGTTATGGCGGTCGAGTCGGGGCACCAGTGTAGCATTTGCTGGAGGGTGTTTTCGAGTGGGCAAGCTTTGGGCGGGCACAAGAGGTGTCATTGGGAGAAAGGGGAAGAGGCGTCAGTGGTGATGACACAACTTGGGATCAGCAACAACACTAATTCTGGTGGGCTGGACTTGAACTTGCCTGCTGCTGCTGCTGCTCCTGCTTCTGCAACTGAAGATGATCAGTCGTCTTCGTATACGTCTCCAGGCCGGGCTTTGGATTTGAGGTTGGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

365

Amino Acids

39.54

Weight (kDa)

6.59

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	100 - 124	2.4e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	194 - 218	7.7e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	282 - 306	1.6e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	512, 843
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccBSI	CCGCTC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	1055
AccII	CGCG	2 cut(s)	384, 674
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	4 cut(s)	243, 261, 279, 349
AcuI	CTGAAG	2 cut(s)	719, 1053
AcyI	GRCGYC	3 cut(s)	231, 480, 932
AdeI	CACNNNGTG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	538
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	628, 1075
AgsI	TTSAA	2 cut(s)	151, 994
AhlI	ACTAGT	1 cut(s)	539
AjnI	CCWGG	3 cut(s)	532, 621, 1063
AluBI	AGCT	5 cut(s)	454, 492, 709, 768, 887
AluI	AGCT	5 cut(s)	454, 492, 709, 768, 887
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	1065
AlwI	GGATC	1 cut(s)	965
Ama87I	CYCGRG	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	209
ApeKI	GCWGC	6 cut(s)	306, 360, 1004, 1007, 1010, 1013
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	3 cut(s)	210, 360, 384
AspS9I	GGNCC	4 cut(s)	225, 252, 436, 615
AsuC2I	CCSGG	5 cut(s)	242, 278, 418, 434, 1070
AsuHPI	GGTGA	2 cut(s)	286, 952
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	2 cut(s)	436, 615
BaeGI	GKGCMC	2 cut(s)	846, 900
BanI	GGYRCC	2 cut(s)	512, 843
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	474, 1041
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	6 cut(s)	318, 347, 991, 994, 997, 1000
BccI	CCATC	1 cut(s)	814
BceAI	ACGGC	3 cut(s)	101, 286, 389
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	3 cut(s)	534, 623, 1065
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	5 cut(s)	242, 278, 418, 434, 1070
BcoDI	GTCTC	1 cut(s)	1065
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	3 cut(s)	489, 540, 759
BfoI	RGCGCY	1 cut(s)	211
Bme1390I	CCNGG	8 cut(s)	242, 278, 418, 434, 534, 623, 1065, 1070
Bme18I	GGWCC	2 cut(s)	436, 615
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	4 cut(s)	225, 252, 436, 615
BmiI	GGNNCC	4 cut(s)	514, 616, 617, 845
BmrFI	CCNGG	8 cut(s)	242, 278, 418, 434, 534, 623, 1065, 1070
BpiI	GAAGAC	2 cut(s)	474, 1041
BpmI	CTGGAG	2 cut(s)	883, 1047
BpuMI	CCSGG	5 cut(s)	242, 278, 418, 434, 1070
BsaHI	GRCGYC	3 cut(s)	231, 480, 932
BsaJI	CCNNGG	2 cut(s)	532, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	628, 1075
Bse1I	ACTGG	3 cut(s)	383, 594, 847
BseBI	CCWGG	3 cut(s)	534, 623, 1065
BseDI	CCNNGG	2 cut(s)	532, 627
BseGI	GGATG	2 cut(s)	706, 718
BseLI	CCNNNNNNNGG	2 cut(s)	628, 1075
BseNI	ACTGG	3 cut(s)	383, 594, 847
BseRI	GAGGAG	2 cut(s)	719, 821
BseSI	GKGCMC	2 cut(s)	846, 900
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	6 cut(s)	318, 347, 991, 994, 997, 1000
BsgI	GTGCAG	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	384, 674
Bsh1285I	CGRYCG	2 cut(s)	282, 834
BshNI	GGYRCC	2 cut(s)	512, 843
BsiEI	CGRYCG	2 cut(s)	282, 834
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	7 cut(s)	242, 278, 401, 417, 434, 570, 1069
BslFI	GGGAC	3 cut(s)	92, 104, 601
BslI	CCNNNNNNNGG	2 cut(s)	628, 1075
BsmAI	GTCTC	1 cut(s)	1065
BsmBI	CGTCTC	1 cut(s)	1065
BsmFI	GGGAC	3 cut(s)	92, 104, 601
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	456, 846, 900
Bsp143I	GATC	3 cut(s)	291, 957, 1039
Bsp68I	TCGCGA	1 cut(s)	674
BspFNI	CGCG	2 cut(s)	384, 674
BspLI	GGNNCC	4 cut(s)	514, 616, 617, 845
BspPI	GGATC	1 cut(s)	965
BspT107I	GGYRCC	2 cut(s)	512, 843
BsrBI	CCGCTC	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	383, 594, 847
BssECI	CCNNGG	2 cut(s)	532, 627
BssMI	GATC	3 cut(s)	291, 957, 1039
BssNAI	GTATAC	1 cut(s)	1056
BssNI	GRCGYC	3 cut(s)	231, 480, 932
BssT1I	CCWWGG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	1056
Bst2UI	CCWGG	3 cut(s)	534, 623, 1065
Bst6I	CTCTTC	2 cut(s)	350, 921
BstACI	GRCGYC	3 cut(s)	231, 480, 932
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	5 cut(s)	508, 646, 885, 896, 1002
BstF5I	GGATG	2 cut(s)	706, 718
BstFNI	CGCG	2 cut(s)	384, 674
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	3 cut(s)	210, 360, 384
BstKTI	GATC	3 cut(s)	294, 960, 1042
BstMAI	GTCTC	1 cut(s)	1065
BstMBI	GATC	3 cut(s)	291, 957, 1039
BstMCI	CGRYCG	2 cut(s)	282, 834
BstMWI	GCNNNNNNNGC	6 cut(s)	312, 315, 357, 1010, 1013, 1019
BstNI	CCWGG	3 cut(s)	534, 623, 1065
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	8 cut(s)	240, 276, 416, 432, 532, 621, 1063, 1068
BstSLI	GKGCMC	2 cut(s)	846, 900
BstUI	CGCG	2 cut(s)	384, 674
BstV1I	GCAGC	6 cut(s)	318, 347, 991, 994, 997, 1000
BstV2I	GAAGAC	2 cut(s)	474, 1041
BstZ17I	GTATAC	1 cut(s)	1056
BstZI	CGGCCG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	706, 718
BtsIMutI	CAGTG	3 cut(s)	376, 854, 942
BtuMI	TCGCGA	1 cut(s)	674
Cac8I	GCNNGC	5 cut(s)	508, 646, 885, 896, 1002
CfoI	GCGC	3 cut(s)	210, 360, 384
Cfr13I	GGNCC	4 cut(s)	225, 252, 436, 615
CseI	GACGC	3 cut(s)	239, 488, 921
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	3 cut(s)	333, 355, 740
CviQI	GTAC	1 cut(s)	537
DpnI	GATC	3 cut(s)	293, 959, 1041
DpnII	GATC	3 cut(s)	291, 957, 1039
DraIII	CACNNNGTG	1 cut(s)	303
EaeI	YGGCCR	4 cut(s)	243, 261, 279, 349
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	350, 921
EarI	CTCTTC	2 cut(s)	350, 921
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	454
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	627
Eco147I	AGGCCT	2 cut(s)	552, 626
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	436, 615
Eco47III	AGCGCT	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	719, 1053
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	532, 621, 1063
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	1065
FaeI	CATG	3 cut(s)	336, 358, 743
FaiI	YATR	6 cut(s)	334, 356, 639, 741, 827, 1056
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	3 cut(s)	92, 104, 601
FatI	CATG	3 cut(s)	332, 354, 739
FauI	CCCGC	1 cut(s)	887
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	1055
FokI	GGATG	2 cut(s)	705, 713
FriOI	GRGCYC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	489, 540, 759
GlaI	GCGC	3 cut(s)	209, 359, 383
GsuI	CTGGAG	2 cut(s)	883, 1047
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	7 cut(s)	242, 278, 401, 417, 434, 570, 1069
HgaI	GACGC	3 cut(s)	239, 488, 921
HhaI	GCGC	3 cut(s)	210, 360, 384
Hin1I	GRCGYC	3 cut(s)	231, 480, 932
Hin1II	CATG	3 cut(s)	336, 358, 743
Hin6I	GCGC	3 cut(s)	208, 358, 382
HinP1I	GCGC	3 cut(s)	208, 358, 382
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	4 cut(s)	387, 499, 566, 836
HpaII	CCGG	7 cut(s)	242, 278, 401, 417, 434, 570, 1069
HphI	GGTGA	2 cut(s)	286, 952
Hpy166II	GTNNAC	2 cut(s)	545, 1056
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	4 cut(s)	11, 443, 557, 673
Hpy8I	GTNNAC	2 cut(s)	545, 1056
Hpy99I	CGWCG	4 cut(s)	98, 101, 233, 482
HpyAV	CCTTC	6 cut(s)	141, 157, 331, 449, 563, 655
HpyCH4IV	ACGT	3 cut(s)	93, 657, 1058
HpyCH4V	TGCA	4 cut(s)	4, 306, 600, 1028
HpyF10VI	GCNNNNNNNGC	6 cut(s)	312, 315, 357, 1010, 1013, 1019
HpySE526I	ACGT	3 cut(s)	93, 657, 1058
Hsp92I	GRCGYC	3 cut(s)	231, 480, 932
Hsp92II	CATG	3 cut(s)	336, 358, 743
HspAI	GCGC	3 cut(s)	208, 358, 382
KflI	GGGWCCC	1 cut(s)	615
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	3 cut(s)	291, 957, 1039
LmnI	GCTCC	6 cut(s)	133, 215, 289, 451, 706, 1021
Lsp1109I	GCAGC	6 cut(s)	318, 347, 991, 994, 997, 1000
MaeI	CTAG	3 cut(s)	489, 540, 759
MaeII	ACGT	3 cut(s)	93, 657, 1058
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	3 cut(s)	293, 959, 1041
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	3 cut(s)	291, 957, 1039
MboII	GAAGA	6 cut(s)	129, 337, 479, 938, 1041, 1046
MhlI	GDGCHC	3 cut(s)	456, 846, 900
MluCI	AATT	1 cut(s)	973
MlyI	GAGTC	2 cut(s)	560, 845
MmeI	TCCRAC	3 cut(s)	49, 415, 433
MroXI	GAANNNNTTC	1 cut(s)	608
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	7 cut(s)	242, 278, 401, 417, 434, 570, 1069
MspR9I	CCNGG	8 cut(s)	242, 278, 418, 434, 534, 623, 1065, 1070
MvaI	CCWGG	3 cut(s)	534, 623, 1065
MvnI	CGCG	2 cut(s)	384, 674
MwoI	GCNNNNNNNGC	6 cut(s)	312, 315, 357, 1010, 1013, 1019
NciI	CCSGG	5 cut(s)	242, 278, 418, 434, 1070
NdeII	GATC	3 cut(s)	291, 957, 1039
NlaIII	CATG	3 cut(s)	336, 358, 743
NlaIV	GGNNCC	4 cut(s)	514, 616, 617, 845
NmuCI	GTSAC	1 cut(s)	799
NruI	TCGCGA	1 cut(s)	674
NspI	RCATGY	1 cut(s)	358
PceI	AGGCCT	2 cut(s)	552, 626
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	387, 499
PflMI	CCANNNNNTGG	1 cut(s)	628
PleI	GAGTC	2 cut(s)	560, 844
PpsI	GAGTC	2 cut(s)	560, 844
PpuMI	RGGWCCY	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	532, 621, 1063
PspGI	CCWGG	3 cut(s)	532, 621, 1063
PspN4I	GGNNCC	4 cut(s)	514, 616, 617, 845
PspPI	GGNCC	4 cut(s)	225, 252, 436, 615
PspPPI	RGGWCCY	1 cut(s)	615
RruI	TCGCGA	1 cut(s)	674
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	291, 957, 1039
Sau96I	GGNCC	4 cut(s)	225, 252, 436, 615
SchI	GAGTC	2 cut(s)	560, 845
ScrFI	CCNGG	8 cut(s)	242, 278, 418, 434, 534, 623, 1065, 1070
SduI	GDGCHC	3 cut(s)	456, 846, 900
SinI	GGWCC	2 cut(s)	436, 615
SmiMI	CAYNNNNRTG	1 cut(s)	744
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	1 cut(s)	973
SseBI	AGGCCT	2 cut(s)	552, 626
SspMI	CTAG	3 cut(s)	489, 540, 759
SstI	GAGCTC	1 cut(s)	456
StuI	AGGCCT	2 cut(s)	552, 626
StyD4I	CCNGG	8 cut(s)	240, 276, 416, 432, 532, 621, 1063, 1068
StyI	CCWWGG	1 cut(s)	627
TaiI	ACGT	3 cut(s)	96, 660, 1061
TaqI	TCGA	6 cut(s)	18, 199, 556, 585, 834, 875
TasI	AATT	1 cut(s)	973
TauI	GCSGC	7 cut(s)	253, 284, 318, 427, 485, 513, 576
TfiI	GAWTC	2 cut(s)	387, 499
TscAI	CASTG	3 cut(s)	383, 854, 942
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	6 cut(s)	306, 360, 1004, 1007, 1010, 1013
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	123, 701
TspGWI	ACGGA	2 cut(s)	94, 818
TspRI	CASTG	3 cut(s)	383, 854, 942
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	436, 615
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	1055
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	3 cut(s)	489, 540, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.