Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8161748.1

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Forward (+)

7 .. 663

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8161748.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgcgctgccaccctgaacgccactggcgcggaatccaacctccgccggatttccaaccagccggttcgccgccgaacccggtccttccggacttggagctctcaatgagcgaagacgaccacgacgccgcctctagcttgttgattcttgccagcggcaccgaccaaactcaactccctggtactagttcacaaggccttcgagaaaacgactccggcggctgtcgtttcgagtgttccagttgcaagaaagtgttcgggtcccaccaggccttgggaggccatagggcgagccacaagaacgtgaagggttgtttcgcgattacaaagagtgatgtggaggtggatgaggagcttcatcatcatcctcatcatcaacttcagcatggtaatgtagtaatggctagtcgtagctgtggcgttgatgatagtaatgttgatgatgtgacggaggagaataacaagatggttatggcggtggagtcggggcaccagtgtagcatttgctggagggtgttttcgagtgggcaagctttgggcgggcacaagaggtgtcattgggagaaaggggaagaggcgtcagtggtgatgacacaacttgggatcagcaacaacactaattctggtgggctggacttgaacttgcctgctgctgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

219

Amino Acids

23.62

Weight (kDa)

5.68

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	158, 489
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccII	CGCG	2 cut(s)	30, 320
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	8 cut(s)	30, 44, 71, 129, 156, 219, 476, 540
AclWI	GGATC	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	126, 578
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	640
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	178, 267
AluBI	AGCT	5 cut(s)	100, 138, 355, 414, 533
AluI	AGCT	5 cut(s)	100, 138, 355, 414, 533
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	3 cut(s)	196, 270, 280
ApeKI	GCWGC	3 cut(s)	6, 650, 653
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	6, 30
AspS9I	GGNCC	2 cut(s)	82, 261
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	82, 261
BaeGI	GKGCMC	2 cut(s)	492, 546
BanI	GGYRCC	2 cut(s)	158, 489
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	637, 640
BccI	CCATC	1 cut(s)	460
BciT130I	CCWGG	2 cut(s)	180, 269
BcnI	CCSGG	1 cut(s)	80
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	3 cut(s)	135, 186, 405
BisI	GCNGC	7 cut(s)	7, 71, 129, 157, 220, 651, 654
BlsI	GCNGC	7 cut(s)	8, 72, 130, 158, 221, 652, 655
Bme1390I	CCNGG	3 cut(s)	80, 180, 269
Bme18I	GGWCC	2 cut(s)	82, 261
BmgT120I	GGNCC	2 cut(s)	82, 261
BmiI	GGNNCC	4 cut(s)	160, 262, 263, 491
BmrFI	CCNGG	3 cut(s)	80, 180, 269
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	126, 578
BsaJI	CCNNGG	2 cut(s)	178, 273
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	29, 240, 493
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	180, 269
BseDI	CCNNGG	2 cut(s)	178, 273
BseGI	GGATG	2 cut(s)	352, 364
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseNI	ACTGG	3 cut(s)	29, 240, 493
BseRI	GAGGAG	2 cut(s)	365, 467
BseSI	GKGCMC	2 cut(s)	492, 546
BseXI	GCAGC	2 cut(s)	637, 640
Bsh1236I	CGCG	2 cut(s)	30, 320
BshFI	GGCC	3 cut(s)	198, 272, 282
BshNI	GGYRCC	2 cut(s)	158, 489
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	5 cut(s)	47, 63, 80, 89, 216
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	3 cut(s)	198, 272, 282
Bsp1286I	GDGCHC	3 cut(s)	102, 492, 546
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	603
Bsp68I	TCGCGA	1 cut(s)	320
BspACI	CCGC	8 cut(s)	30, 44, 71, 129, 156, 219, 476, 540
BspANI	GGCC	3 cut(s)	198, 272, 282
BspEI	TCCGGA	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	30, 320
BspLI	GGNNCC	4 cut(s)	160, 262, 263, 491
BspPI	GGATC	1 cut(s)	611
BspT107I	GGYRCC	2 cut(s)	158, 489
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	29, 240, 493
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	178, 273
BssMI	GATC	1 cut(s)	603
BssNI	GRCGYC	2 cut(s)	126, 578
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	180, 269
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	2 cut(s)	126, 578
BstC8I	GCNNGC	5 cut(s)	154, 292, 531, 542, 648
BstF5I	GGATG	2 cut(s)	352, 364
BstFNI	CGCG	2 cut(s)	30, 320
BstHHI	GCGC	2 cut(s)	6, 30
BstKTI	GATC	1 cut(s)	606
BstMBI	GATC	1 cut(s)	603
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	2 cut(s)	180, 269
BstSCI	CCNGG	3 cut(s)	78, 178, 267
BstSLI	GKGCMC	2 cut(s)	492, 546
BstUI	CGCG	2 cut(s)	30, 320
BstV1I	GCAGC	2 cut(s)	637, 640
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	198, 272, 282
BtsCI	GGATG	2 cut(s)	352, 364
BtsIMutI	CAGTG	3 cut(s)	22, 500, 588
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	5 cut(s)	154, 292, 531, 542, 648
CfoI	GCGC	2 cut(s)	6, 30
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	82, 261
CseI	GACGC	2 cut(s)	134, 567
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	1 cut(s)	183
DpnI	GATC	1 cut(s)	605
DpnII	GATC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	2 cut(s)	198, 272
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	82, 261
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	178, 267
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	389
FaiI	YATR	3 cut(s)	285, 387, 473
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	385
FauI	CCCGC	1 cut(s)	533
Fnu4HI	GCNGC	7 cut(s)	7, 71, 129, 157, 220, 651, 654
FokI	GGATG	2 cut(s)	351, 359
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	7 cut(s)	7, 71, 129, 157, 220, 651, 654
FspBI	CTAG	3 cut(s)	135, 186, 405
GlaI	GCGC	2 cut(s)	5, 29
GluI	GCNGC	7 cut(s)	7, 71, 129, 157, 220, 651, 654
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	3 cut(s)	198, 272, 282
HapII	CCGG	5 cut(s)	47, 63, 80, 89, 216
HgaI	GACGC	2 cut(s)	134, 567
HhaI	GCGC	2 cut(s)	6, 30
Hin1I	GRCGYC	2 cut(s)	126, 578
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	2 cut(s)	4, 28
HinP1I	GCGC	2 cut(s)	4, 28
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	4 cut(s)	33, 145, 212, 482
HpaII	CCGG	5 cut(s)	47, 63, 80, 89, 216
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	3 cut(s)	89, 203, 319
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	95, 209, 301
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	2 cut(s)	126, 578
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	2 cut(s)	4, 28
KflI	GGGWCCC	1 cut(s)	261
Kpn2I	TCCGGA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	603
LmnI	GCTCC	2 cut(s)	97, 352
Lsp1109I	GCAGC	2 cut(s)	637, 640
MaeI	CTAG	3 cut(s)	135, 186, 405
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	605
MboI	GATC	1 cut(s)	603
MboII	GAAGA	2 cut(s)	125, 584
MhlI	GDGCHC	3 cut(s)	102, 492, 546
MluCI	AATT	1 cut(s)	619
MlyI	GAGTC	2 cut(s)	206, 491
MmeI	TCCRAC	2 cut(s)	61, 79
MroI	TCCGGA	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	5 cut(s)	47, 63, 80, 89, 216
MspR9I	CCNGG	3 cut(s)	80, 180, 269
MvaI	CCWGG	2 cut(s)	180, 269
MvnI	CGCG	2 cut(s)	30, 320
MwoI	GCNNNNNNNGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	603
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	4 cut(s)	160, 262, 263, 491
NmuCI	GTSAC	1 cut(s)	445
NruI	TCGCGA	1 cut(s)	320
PceI	AGGCCT	2 cut(s)	198, 272
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	33, 145
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	7 cut(s)	8, 72, 130, 158, 221, 652, 655
PleI	GAGTC	2 cut(s)	206, 490
PpsI	GAGTC	2 cut(s)	206, 490
PpuMI	RGGWCCY	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	178, 267
PspGI	CCWGG	2 cut(s)	178, 267
PspN4I	GGNNCC	4 cut(s)	160, 262, 263, 491
PspPI	GGNCC	2 cut(s)	82, 261
PspPPI	RGGWCCY	1 cut(s)	261
RruI	TCGCGA	1 cut(s)	320
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	102
SatI	GCNGC	7 cut(s)	7, 71, 129, 157, 220, 651, 654
Sau3AI	GATC	1 cut(s)	603
Sau96I	GGNCC	2 cut(s)	82, 261
SchI	GAGTC	2 cut(s)	206, 491
ScrFI	CCNGG	3 cut(s)	80, 180, 269
SduI	GDGCHC	3 cut(s)	102, 492, 546
SetI	ASST	9 cut(s)	43, 102, 140, 306, 345, 357, 416, 535, 554
SinI	GGWCC	2 cut(s)	82, 261
SmiMI	CAYNNNNRTG	1 cut(s)	390
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	1 cut(s)	619
SseBI	AGGCCT	2 cut(s)	198, 272
SsiI	CCGC	8 cut(s)	30, 44, 71, 129, 156, 219, 476, 540
SspMI	CTAG	3 cut(s)	135, 186, 405
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	2 cut(s)	198, 272
StyD4I	CCNGG	3 cut(s)	78, 178, 267
StyI	CCWWGG	1 cut(s)	273
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	202, 231, 521
TasI	AATT	1 cut(s)	619
TauI	GCSGC	4 cut(s)	73, 131, 159, 222
TfiI	GAWTC	2 cut(s)	33, 145
TscAI	CASTG	3 cut(s)	29, 500, 588
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	6, 650, 653
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	3 cut(s)	29, 500, 588
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	82, 261
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	3 cut(s)	135, 186, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.