RLG00000013032

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
25215710 .. 25216795
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013032

Sequence Viewer

Length: 1086 bp
ATGCACAATCCCGACCTCGATTTCCGACACCCCACTCCTCCACCACCACCAACACCACCGCCACCGCCACCATTACCAACTCAACCCCACCACTACCCAAACGTTGTCGTTTCCGTCCCTACCGCCGTCCCTTTCGCTTCTTCATCTTCTACTTCCTTCAACTTCCCCGAGAGCAATAATGCCTCACAACCCCACCAGCAAAACCCTCGAAAGAAGCGCTCCAAACTGATGAGGCCCGACGCCGACAACCCGGCCAAGCGGCTTAAGTCCGCCAAGAAACCCGACCCGGCCGCCCCCAAGATCACCACGCCGTGCAGCGAGTGCGGCAGGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGCCACCCTGAACGCCACTGGCGCGGAATCCAACCTCCGCCGGATTTCCAACGAGCCGGTTCGCCGCCGAACCCGGTCCTTCCCGACTTGGAGCTCTCAATGAGCGAAGACGACCACGACGCCGCCTCTAGCTTGTTGATTCTTGCCAGCGGCACGGACCAAACTGAACTCCCTGGTACTAGTTCACAAGGCCTTCGAGAAAACGACTCCGGCGGCTGTCGTTTTGAGTGTTCCAGTTGCAAGAAAGTGTTCGGGTCCCACCAGGCCTTGGGAGGCCACAGGGCCAGCCACAAGAATGTGAAGGGTTGTTTCGCAATTACGAAGAGTGATGTGGAGGTGGATGAGGAGCTTCATCATCATCTTCAGCACGGTAATGTAGTAATGGCTAGTCGTAGCTGTGGCGTTGATGATAGTAATGTTGATGATGTGATGGAGGAGAATAACAAGATGGTTATGGCAGTGGAGTCGGGGCACCAGTGTAGCATTTGCTGGAGGGTGTTTTCGAGTGGGCAAGCTTTGGGCGGGCACAAGAGGTGTCATTGGGAGAAAGGGGAAGAGGCGTCAGTGGTGTTGACACAACTTGGGATCAGTAACAACACTAATTCTGGTGGGCTGGACTTGAACGTGCCTGCTGCTCCTGCTCCTGCAACTGAAGATGATCAGTCGTCTTCGTATACGTCTCCAGGCCTGGCTTTGGATTTGAGGTTGGGTCTTTGA

Protein Analysis

362

Amino Acids

39.14

Weight (kDa)

6.43

Isoelectric Point (pI)

62.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 103 - 127 2.4e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 197 - 221 7.6e-10 C2H2-type zinc finger
zf-C2H2_6 PF13912 281 - 305 1.6e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 840
AccB7I CCANNNNNTGG 1 cut(s) 637
AccI GTMKAC 1 cut(s) 1043
AccII CGCG 1 cut(s) 393
AclI AACGTT 1 cut(s) 102
AclWI GGATC 1 cut(s) 962
AcoI YGGCCR 3 cut(s) 252, 288, 358
AcuI CTGAAG 2 cut(s) 716, 1041
AcyI GRCGYC 3 cut(s) 240, 489, 929
AdeI CACNNNGTG 1 cut(s) 312
AfaI GTAC 1 cut(s) 547
AfeI AGCGCT 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 637, 1063
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 160, 991
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 4 cut(s) 541, 630, 1051, 1056
AluBI AGCT 5 cut(s) 463, 501, 718, 765, 884
AluI AGCT 5 cut(s) 463, 501, 718, 765, 884
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 1053
AlwI GGATC 1 cut(s) 962
Ama87I CYCGRG 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 9 cut(s) 233, 252, 288, 358, 559, 633, 643, 651, 1054
ApeKI GCWGC 3 cut(s) 315, 369, 1001
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 3 cut(s) 219, 369, 393
AspS9I GGNCC 5 cut(s) 234, 445, 526, 624, 651
AsuC2I CCSGG 3 cut(s) 251, 287, 443
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 3 cut(s) 445, 526, 624
BaeGI GKGCMC 2 cut(s) 843, 897
BanI GGYRCC 1 cut(s) 840
BanII GRGCYC 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 483, 1029
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 327, 356, 988
BccI CCATC 2 cut(s) 793, 811
BceAI ACGGC 2 cut(s) 110, 295
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 816, 850
BciT130I CCWGG 4 cut(s) 543, 632, 1053, 1058
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 3 cut(s) 251, 287, 443
BcoDI GTCTC 1 cut(s) 1053
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 3 cut(s) 498, 549, 756
BfoI RGCGCY 1 cut(s) 220
BfrI CTTAAG 1 cut(s) 263
Bme1390I CCNGG 7 cut(s) 251, 287, 443, 543, 632, 1053, 1058
Bme18I GGWCC 3 cut(s) 445, 526, 624
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 5 cut(s) 234, 445, 526, 624, 651
BmiI GGNNCC 3 cut(s) 625, 626, 842
BmrFI CCNGG 7 cut(s) 251, 287, 443, 543, 632, 1053, 1058
BpiI GAAGAC 2 cut(s) 483, 1029
BpmI CTGGAG 2 cut(s) 880, 1035
BpuMI CCSGG 3 cut(s) 251, 287, 443
BsaHI GRCGYC 3 cut(s) 240, 489, 929
BsaJI CCNNGG 2 cut(s) 541, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 1063
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 392, 603, 844
BseBI CCWGG 4 cut(s) 543, 632, 1053, 1058
BseDI CCNNGG 2 cut(s) 541, 636
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 2 cut(s) 637, 1063
BseNI ACTGG 3 cut(s) 392, 603, 844
BseRI GAGGAG 3 cut(s) 27, 728, 818
BseSI GKGCMC 2 cut(s) 843, 897
BseX3I CGGCCG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 327, 356, 988
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 393
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 9 cut(s) 235, 254, 290, 360, 561, 635, 645, 653, 1056
BshNI GGYRCC 1 cut(s) 840
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 6 cut(s) 251, 287, 410, 426, 443, 579
BslFI GGGAC 3 cut(s) 101, 113, 610
BslI CCNNNNNNNGG 2 cut(s) 637, 1063
BsmAI GTCTC 1 cut(s) 1053
BsmBI CGTCTC 1 cut(s) 1053
BsmFI GGGAC 3 cut(s) 101, 113, 610
BsnI GGCC 9 cut(s) 235, 254, 290, 360, 561, 635, 645, 653, 1056
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 3 cut(s) 465, 843, 897
Bsp143I GATC 3 cut(s) 300, 954, 1027
BspANI GGCC 9 cut(s) 235, 254, 290, 360, 561, 635, 645, 653, 1056
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 625, 626, 842
BspPI GGATC 1 cut(s) 962
BspT107I GGYRCC 1 cut(s) 840
BspTI CTTAAG 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 3 cut(s) 392, 603, 844
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 541, 636
BssMI GATC 3 cut(s) 300, 954, 1027
BssNAI GTATAC 1 cut(s) 1044
BssNI GRCGYC 3 cut(s) 240, 489, 929
BssT1I CCWWGG 1 cut(s) 636
Bst1107I GTATAC 1 cut(s) 1044
Bst2UI CCWGG 4 cut(s) 543, 632, 1053, 1058
Bst4CI ACNGT 1 cut(s) 740
Bst6I CTCTTC 3 cut(s) 359, 686, 918
BstACI GRCGYC 3 cut(s) 240, 489, 929
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 321
BstC8I GCNNGC 5 cut(s) 517, 655, 882, 893, 999
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 3 cut(s) 219, 369, 393
BstKTI GATC 3 cut(s) 303, 957, 1030
BstMAI GTCTC 1 cut(s) 1053
BstMBI GATC 3 cut(s) 300, 954, 1027
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 5 cut(s) 321, 324, 366, 390, 1007
BstNI CCWGG 4 cut(s) 543, 632, 1053, 1058
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 7 cut(s) 249, 285, 441, 541, 630, 1051, 1056
BstSLI GKGCMC 2 cut(s) 843, 897
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 327, 356, 988
BstV2I GAAGAC 2 cut(s) 483, 1029
BstZ17I GTATAC 1 cut(s) 1044
BstZI CGGCCG 1 cut(s) 288
BsuRI GGCC 9 cut(s) 235, 254, 290, 360, 561, 635, 645, 653, 1056
BtsCI GGATG 1 cut(s) 715
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 4 cut(s) 385, 834, 851, 939
Cac8I GCNNGC 5 cut(s) 517, 655, 882, 893, 999
CfoI GCGC 3 cut(s) 219, 369, 393
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 5 cut(s) 234, 445, 526, 624, 651
CseI GACGC 3 cut(s) 248, 497, 918
Csp6I GTAC 1 cut(s) 546
CviAII CATG 2 cut(s) 342, 364
CviQI GTAC 1 cut(s) 546
DpnI GATC 3 cut(s) 302, 956, 1029
DpnII GATC 3 cut(s) 300, 954, 1027
DraIII CACNNNGTG 1 cut(s) 312
EaeI YGGCCR 3 cut(s) 252, 288, 358
EagI CGGCCG 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 359, 686, 918
EarI CTCTTC 3 cut(s) 359, 686, 918
EciI GGCGGA 2 cut(s) 259, 396
Ecl136II GAGCTC 1 cut(s) 463
EclXI CGGCCG 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 3 cut(s) 561, 635, 1056
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 445, 526, 624
Eco47III AGCGCT 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 716, 1041
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 624
EcoRII CCWGG 4 cut(s) 541, 630, 1051, 1056
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 636
Esp3I CGTCTC 1 cut(s) 1053
FaeI CATG 2 cut(s) 345, 367
FaiI YATR 4 cut(s) 343, 365, 824, 1044
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 3 cut(s) 101, 113, 610
FatI CATG 2 cut(s) 341, 363
FauI CCCGC 1 cut(s) 884
FbaI TGATCA 1 cut(s) 1027
FblI GTMKAC 1 cut(s) 1043
FokI GGATG 1 cut(s) 722
FriOI GRGCYC 1 cut(s) 465
FspBI CTAG 3 cut(s) 498, 549, 756
GlaI GCGC 3 cut(s) 218, 368, 392
GsuI CTGGAG 2 cut(s) 880, 1035
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 9 cut(s) 235, 254, 290, 360, 561, 635, 645, 653, 1056
HapII CCGG 6 cut(s) 251, 287, 410, 426, 443, 579
HgaI GACGC 3 cut(s) 248, 497, 918
HhaI GCGC 3 cut(s) 219, 369, 393
Hin1I GRCGYC 3 cut(s) 240, 489, 929
Hin1II CATG 2 cut(s) 345, 367
Hin6I GCGC 3 cut(s) 217, 367, 391
HinP1I GCGC 3 cut(s) 217, 367, 391
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 4 cut(s) 396, 508, 575, 833
HpaII CCGG 6 cut(s) 251, 287, 410, 426, 443, 579
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 3 cut(s) 554, 942, 1044
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 3 cut(s) 11, 452, 566
Hpy8I GTNNAC 3 cut(s) 554, 942, 1044
Hpy99I CGWCG 2 cut(s) 242, 491
HpyAV CCTTC 5 cut(s) 166, 340, 458, 572, 664
HpyCH4III ACNGT 1 cut(s) 740
HpyCH4IV ACGT 3 cut(s) 102, 993, 1046
HpyCH4V TGCA 4 cut(s) 4, 315, 609, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 321, 324, 366, 390, 1007
HpySE526I ACGT 3 cut(s) 102, 993, 1046
Hsp92I GRCGYC 3 cut(s) 240, 489, 929
Hsp92II CATG 2 cut(s) 345, 367
HspAI GCGC 3 cut(s) 217, 367, 391
KflI GGGWCCC 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 1027
Kzo9I GATC 3 cut(s) 300, 954, 1027
LmnI GCTCC 5 cut(s) 224, 460, 715, 1009, 1015
Lsp1109I GCAGC 3 cut(s) 327, 356, 988
MaeI CTAG 3 cut(s) 498, 549, 756
MaeII ACGT 3 cut(s) 102, 993, 1046
MaeIII GTNAC 1 cut(s) 959
MalI GATC 3 cut(s) 302, 956, 1029
MboI GATC 3 cut(s) 300, 954, 1027
MboII GAAGA 9 cut(s) 132, 138, 346, 488, 703, 722, 935, 1029, 1034
MhlI GDGCHC 3 cut(s) 465, 843, 897
MluCI AATT 2 cut(s) 684, 970
MlyI GAGTC 2 cut(s) 569, 842
MmeI TCCRAC 3 cut(s) 49, 424, 442
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 2 cut(s) 663, 741
MspA1I CMGCKG 1 cut(s) 519
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 6 cut(s) 251, 287, 410, 426, 443, 579
MspR9I CCNGG 7 cut(s) 251, 287, 443, 543, 632, 1053, 1058
MvaI CCWGG 4 cut(s) 543, 632, 1053, 1058
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 5 cut(s) 321, 324, 366, 390, 1007
NciI CCSGG 3 cut(s) 251, 287, 443
NdeII GATC 3 cut(s) 300, 954, 1027
NlaIII CATG 2 cut(s) 345, 367
NlaIV GGNNCC 3 cut(s) 625, 626, 842
NspI RCATGY 1 cut(s) 367
PceI AGGCCT 3 cut(s) 561, 635, 1056
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 2 cut(s) 396, 508
PflMI CCANNNNNTGG 1 cut(s) 637
PleI GAGTC 2 cut(s) 569, 841
PpsI GAGTC 2 cut(s) 569, 841
PpuMI RGGWCCY 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 465
Psp1406I AACGTT 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 624
Psp6I CCWGG 4 cut(s) 541, 630, 1051, 1056
PspGI CCWGG 4 cut(s) 541, 630, 1051, 1056
PspN4I GGNNCC 3 cut(s) 625, 626, 842
PspPI GGNCC 5 cut(s) 234, 445, 526, 624, 651
PspPPI RGGWCCY 1 cut(s) 624
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
RseI CAYNNNNRTG 2 cut(s) 663, 741
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 3 cut(s) 300, 954, 1027
Sau96I GGNCC 5 cut(s) 234, 445, 526, 624, 651
SchI GAGTC 2 cut(s) 569, 842
ScrFI CCNGG 7 cut(s) 251, 287, 443, 543, 632, 1053, 1058
SduI GDGCHC 3 cut(s) 465, 843, 897
SinI GGWCC 3 cut(s) 445, 526, 624
SmiMI CAYNNNNRTG 2 cut(s) 663, 741
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 2 cut(s) 684, 970
SseBI AGGCCT 3 cut(s) 561, 635, 1056
SspMI CTAG 3 cut(s) 498, 549, 756
SstI GAGCTC 1 cut(s) 465
StuI AGGCCT 3 cut(s) 561, 635, 1056
StyD4I CCNGG 7 cut(s) 249, 285, 441, 541, 630, 1051, 1056
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 740
TaiI ACGT 3 cut(s) 105, 996, 1049
TaqI TCGA 4 cut(s) 18, 208, 565, 872
TasI AATT 2 cut(s) 684, 970
TauI GCSGC 7 cut(s) 262, 293, 327, 436, 494, 522, 585
TfiI GAWTC 2 cut(s) 396, 508
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 4 cut(s) 392, 834, 851, 939
TseI GCWGC 3 cut(s) 315, 369, 1001
TspDTI ATGAA 2 cut(s) 132, 710
TspGWI ACGGA 2 cut(s) 103, 539
TspRI CASTG 4 cut(s) 392, 834, 851, 939
Van91I CCANNNNNTGG 1 cut(s) 637
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 3 cut(s) 445, 526, 624
XceI RCATGY 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 1043
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 3 cut(s) 498, 549, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.