Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Reverse (-)

26290419 .. 26291546

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1134500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAACAACTCTCCCGACATCGATTTCCGATTCCCCATATCCCCTCCAACCCACCAAGACGCCGTCGTTCCCGCCGCTCTCGCCACCACCACTGCCTACTTGGCTTCATCTTCTTCCACTTGTTTCACTGCAGACGATAAAACCCACCACAATCGCAGGAAGAAACGCTCCAAGCTGATCAGGCTCGACAACCAGGCTGCTCCGAACAAGGTTTTGAGGCCCAAGTATGCGACAAAACCCGACCCATCTGCCCCAAAGATCACGAAACCCTGCACTGAGTGCGGCAAGACGTTCTGGTCATGGAAGGCTTTGTTCGGGCACATGCGGTGCCACCCCGAGCGCCAGTGGAGGGGCATTGACCCACCGCCAAATCTGCGGGTGCCCGCTTCACCCAACATCACGTTGAGCAAGTTGGGATTGGCCATGGGTGAAGAGGACCACGAGGCCGCCTCGAGTTTGCTAATGCTTTCCAGTGGGATTATTTCTGGGACAAGTAATGAGATCATCGTTACTACCGCCGCTACTCAGAGTGTGAGTAATAATAGTAATCTCCAAGGTATACAGGAGGTGTTTGATGGTGGTAATAGTAACAATAGTGGTAGGTTTGAGTGCTCGAGTTGTAAGAAAGTGTTTGCGTCCCACCAGGCGTTGGGGGGCCACAGGGCAAGCCACAAGAATGTGAAGGGCTGTTTTGCAATTACAAGGAGTGATGGAGAGGTTGATCAGGATCATCATCACCACAATGAAGATGGTGATGGTGATGGTGATGGTGATGATGATGTGATGGATGAGGATCACATGGAGTTGGTGGGATCATCAGCAGGGCACAAGTGCACTGTTTGTTGGAGGGTATTTTCAAGTGGGCAGGCATTGGGAGGGCACATGAGGTGTCACTGGGAAAAGGGGGAGGAGACCCAATTAGAGTTAGGGTTAGGGTTCAACCTGCAGCAGCCTTATGGAACTTCAAAGGAATTGTTATTAGGTCAAAATTCTGGTGGTAGTGGTGGTGGGCTGGACTTGAATTTGCCTGCTGCTGCTGCTTCTACTTCTCACACTGCAGATGATCAGTACTGCTCCTCTTCTTACTCTTTTTCTGGACTCACTTTGGATTTAAGGTTGGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

376

Amino Acids

40.36

Weight (kDa)

6.12

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	91 - 113	2.3e-07	C2H2-type zinc finger
zf-C2H2_6	PF13912	201 - 225	1.2e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	276 - 300	2.3e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	295
Acc36I	ACCTGC	1 cut(s)	951
AccB1I	GGYRCC	2 cut(s)	327, 379
AccB7I	CCANNNNNTGG	1 cut(s)	649
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	559
AclWI	GGATC	3 cut(s)	735, 801, 820
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	988, 1021
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	1070
AfiI	CCNNNNNNNGG	2 cut(s)	349, 649
AgsI	TTSAA	4 cut(s)	858, 940, 966, 1021
AjnI	CCWGG	2 cut(s)	192, 642
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw21I	GWGCWC	2 cut(s)	614, 836
Alw26I	GTCTC	1 cut(s)	905
Alw44I	GTGCAC	1 cut(s)	832
AlwI	GGATC	3 cut(s)	735, 801, 820
Ama87I	CYCGRG	3 cut(s)	335, 451, 613
AoxI	GGCC	4 cut(s)	218, 420, 444, 655
ApaLI	GTGCAC	1 cut(s)	832
ApeKI	GCWGC	6 cut(s)	197, 946, 949, 1031, 1034, 1037
ApoI	RAATTY	2 cut(s)	988, 1021
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	3 cut(s)	219, 436, 655
AsuHPI	GGTGA	7 cut(s)	381, 440, 728, 764, 770, 776, 782
AvaI	CYCGRG	3 cut(s)	335, 451, 613
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	5 cut(s)	321, 384, 828, 836, 882
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	2 cut(s)	327, 379
BauI	CACGAG	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	614, 836
BbvI	GCAGC	6 cut(s)	184, 958, 961, 1018, 1021, 1024
BccI	CCATC	8 cut(s)	253, 569, 704, 743, 749, 755, 761, 778
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	2 cut(s)	194, 644
BclI	TGATCA	3 cut(s)	177, 721, 1063
BcoDI	GTCTC	1 cut(s)	905
BfmI	CTRYAG	3 cut(s)	129, 944, 1056
BfoI	RGCGCY	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	951
BglI	GCCNNNNNGGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	1070
Bme1390I	CCNGG	2 cut(s)	194, 644
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	3 cut(s)	335, 451, 613
BmgT120I	GGNCC	3 cut(s)	219, 436, 655
BmiI	GGNNCC	3 cut(s)	329, 381, 656
BmrFI	CCNGG	2 cut(s)	194, 644
BmrI	ACTGGG	1 cut(s)	904
BmuI	ACTGGG	1 cut(s)	904
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	3 cut(s)	726, 732, 792
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	423, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 649
Bse1I	ACTGG	3 cut(s)	343, 471, 899
Bse8I	GATNNNNATC	3 cut(s)	726, 732, 792
BseBI	CCWGG	2 cut(s)	194, 644
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	423, 553
BseGI	GGATG	1 cut(s)	793
BseJI	GATNNNNATC	3 cut(s)	726, 732, 792
BseLI	CCNNNNNNNGG	2 cut(s)	349, 649
BseMII	CTCAG	2 cut(s)	267, 539
BseNI	ACTGG	3 cut(s)	343, 471, 899
BseRI	GAGGAG	2 cut(s)	923, 1066
BseSI	GKGCMC	5 cut(s)	321, 384, 828, 836, 882
BseXI	GCAGC	6 cut(s)	184, 958, 961, 1018, 1021, 1024
BsgI	GTGCAG	1 cut(s)	256
BshFI	GGCC	4 cut(s)	220, 422, 446, 657
BshNI	GGYRCC	2 cut(s)	327, 379
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	2 cut(s)	614, 836
BsiHKCI	CYCGRG	3 cut(s)	335, 451, 613
BslFI	GGGAC	2 cut(s)	502, 622
BslI	CCNNNNNNNGG	2 cut(s)	349, 649
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	2 cut(s)	502, 622
BsnI	GGCC	4 cut(s)	220, 422, 446, 657
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	3 cut(s)	335, 451, 613
Bsp1286I	GDGCHC	6 cut(s)	321, 384, 614, 828, 836, 882
Bsp143I	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
Bsp19I	CCATGG	1 cut(s)	423
BspANI	GGCC	4 cut(s)	220, 422, 446, 657
BspCNI	CTCAG	2 cut(s)	268, 538
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	329, 381, 656
BspMAI	CTGCAG	3 cut(s)	133, 948, 1060
BspMI	ACCTGC	1 cut(s)	951
BspPI	GGATC	3 cut(s)	735, 801, 820
BspT107I	GGYRCC	2 cut(s)	327, 379
BspTNI	GGTCTC	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	343, 471, 899
BssECI	CCNNGG	2 cut(s)	423, 553
BssMI	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
BssNAI	GTATAC	1 cut(s)	560
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	423, 553
Bst1107I	GTATAC	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	194, 644
Bst4CI	ACNGT	1 cut(s)	838
Bst6I	CTCTTC	2 cut(s)	426, 1084
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	4 cut(s)	384, 667, 867, 1029
BstDEI	CTNAG	2 cut(s)	276, 525
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	793
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	8 cut(s)	180, 261, 504, 724, 730, 796, 815, 1066
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 101, 181, 279, 373, 1037
BstNI	CCWGG	2 cut(s)	194, 644
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	192, 642
BstSFI	CTRYAG	3 cut(s)	129, 944, 1056
BstSLI	GKGCMC	5 cut(s)	321, 384, 828, 836, 882
BstV1I	GCAGC	6 cut(s)	184, 958, 961, 1018, 1021, 1024
BstZ17I	GTATAC	1 cut(s)	560
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	220, 422, 446, 657
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	793
BtsI	GCAGTG	3 cut(s)	90, 126, 1053
BtsIMutI	CAGTG	8 cut(s)	90, 126, 273, 350, 478, 834, 892, 1053
BveI	ACCTGC	1 cut(s)	951
Cac8I	GCNNGC	4 cut(s)	384, 667, 867, 1029
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	3 cut(s)	219, 436, 655
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	2 cut(s)	68, 624
Csp6I	GTAC	1 cut(s)	1069
CviAII	CATG	5 cut(s)	300, 322, 424, 799, 883
CviQI	GTAC	1 cut(s)	1069
DdeI	CTNAG	2 cut(s)	276, 525
DpnI	GATC	8 cut(s)	179, 260, 503, 723, 729, 795, 814, 1065
DpnII	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
DraIII	CACNNNGTG	1 cut(s)	279
DrdI	GACNNNNNNGTC	1 cut(s)	295
DseDI	GACNNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	426, 1084
EarI	CTCTTC	2 cut(s)	426, 1084
Eco130I	CCWWGG	2 cut(s)	423, 553
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	436
Eco88I	CYCGRG	3 cut(s)	335, 451, 613
EcoRII	CCWGG	2 cut(s)	192, 642
EcoT14I	CCWWGG	2 cut(s)	423, 553
ErhI	CCWWGG	2 cut(s)	423, 553
FaeI	CATG	5 cut(s)	303, 325, 427, 802, 886
FaiI	YATR	9 cut(s)	38, 228, 301, 323, 425, 560, 800, 884, 957
FaqI	GGGAC	2 cut(s)	502, 622
FatI	CATG	5 cut(s)	299, 321, 423, 798, 882
FauI	CCCGC	3 cut(s)	79, 369, 391
FbaI	TGATCA	3 cut(s)	177, 721, 1063
FblI	GTMKAC	1 cut(s)	559
FokI	GGATG	1 cut(s)	800
GlaI	GCGC	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	4 cut(s)	220, 422, 446, 657
HgaI	GACGC	2 cut(s)	68, 624
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	303, 325, 427, 802, 886
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	30, 1098
HphI	GGTGA	7 cut(s)	381, 440, 728, 764, 770, 776, 782
Hpy166II	GTNNAC	2 cut(s)	560, 834
Hpy188I	TCNGA	3 cut(s)	29, 204, 528
Hpy188III	TCNNGA	4 cut(s)	14, 262, 725, 1095
Hpy8I	GTNNAC	2 cut(s)	560, 834
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	298, 676
HpyCH4III	ACNGT	1 cut(s)	838
HpyCH4IV	ACGT	2 cut(s)	290, 401
HpyCH4V	TGCA	6 cut(s)	131, 273, 695, 834, 946, 1058
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 101, 181, 279, 373, 1037
HpyF3I	CTNAG	2 cut(s)	276, 525
HpySE526I	ACGT	2 cut(s)	290, 401
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	303, 325, 427, 802, 886
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	3 cut(s)	177, 721, 1063
Kzo9I	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
LmnI	GCTCC	3 cut(s)	173, 205, 1079
Lsp1109I	GCAGC	6 cut(s)	184, 958, 961, 1018, 1021, 1024
MaeII	ACGT	2 cut(s)	290, 401
MaeIII	GTNAC	3 cut(s)	508, 587, 890
MalI	GATC	8 cut(s)	179, 260, 503, 723, 729, 795, 814, 1065
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
MboII	GAAGA	6 cut(s)	102, 105, 172, 443, 758, 1071
MhlI	GDGCHC	6 cut(s)	321, 384, 614, 828, 836, 882
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	5 cut(s)	696, 917, 971, 988, 1021
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	1092
MmeI	TCCRAC	2 cut(s)	71, 824
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	1 cut(s)	1112
MslI	CAYNNNNRTG	2 cut(s)	675, 741
Msp20I	TGGCCA	1 cut(s)	422
MspR9I	CCNGG	2 cut(s)	194, 644
MvaI	CCWGG	2 cut(s)	194, 644
MwoI	GCNNNNNNNGC	6 cut(s)	80, 101, 181, 279, 373, 1037
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
NlaIII	CATG	5 cut(s)	303, 325, 427, 802, 886
NlaIV	GGNNCC	3 cut(s)	329, 381, 656
NmuCI	GTSAC	1 cut(s)	890
NspI	RCATGY	1 cut(s)	325
PaeR7I	CTCGAG	2 cut(s)	451, 613
PfeI	GAWTC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	649
PleI	GAGTC	1 cut(s)	1092
PpsI	GAGTC	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	192, 642
PspGI	CCWGG	2 cut(s)	192, 642
PspN4I	GGNNCC	3 cut(s)	329, 381, 656
PspPI	GGNCC	3 cut(s)	219, 436, 655
PspXI	VCTCGAGB	2 cut(s)	451, 613
PstI	CTGCAG	3 cut(s)	133, 948, 1060
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	1070
RsaNI	GTAC	1 cut(s)	1069
RseI	CAYNNNNRTG	2 cut(s)	675, 741
SaqAI	TTAA	1 cut(s)	1112
Sau3AI	GATC	8 cut(s)	177, 258, 501, 721, 727, 793, 812, 1063
Sau96I	GGNCC	3 cut(s)	219, 436, 655
ScaI	AGTACT	1 cut(s)	1070
SchI	GAGTC	1 cut(s)	1092
ScrFI	CCNGG	2 cut(s)	194, 644
SduI	GDGCHC	6 cut(s)	321, 384, 614, 828, 836, 882
SfcI	CTRYAG	3 cut(s)	129, 944, 1056
Sfr274I	CTCGAG	2 cut(s)	451, 613
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	2 cut(s)	451, 613
SmiMI	CAYNNNNRTG	2 cut(s)	675, 741
SmlI	CTYRAG	2 cut(s)	451, 613
SmoI	CTYRAG	2 cut(s)	451, 613
Sse9I	AATT	5 cut(s)	696, 917, 971, 988, 1021
StyD4I	CCNGG	2 cut(s)	192, 642
StyI	CCWWGG	2 cut(s)	423, 553
TaaI	ACNGT	1 cut(s)	838
TaiI	ACGT	2 cut(s)	293, 404
TaqI	TCGA	4 cut(s)	21, 186, 452, 614
TasI	AATT	5 cut(s)	696, 917, 971, 988, 1021
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	4 cut(s)	77, 285, 449, 521
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	1112
Tru9I	TTAA	1 cut(s)	1112
TscAI	CASTG	8 cut(s)	97, 133, 280, 350, 478, 841, 899, 1060
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	6 cut(s)	197, 946, 949, 1031, 1034, 1037
Tsp45I	GTSAC	1 cut(s)	890
TspDTI	ATGAA	3 cut(s)	17, 96, 759
TspRI	CASTG	8 cut(s)	97, 133, 280, 350, 478, 841, 899, 1060
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	2 cut(s)	988, 1021
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	2 cut(s)	97, 746
XhoI	CTCGAG	2 cut(s)	451, 613
XmiI	GTMKAC	1 cut(s)	559
ZrmI	AGTACT	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.