FvH4_2g16630

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
14499661 .. 14501146
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16630.t1

Sequence Viewer

Length: 1212 bp
ATGAACAACAATCCCGACGACCACCTCGATTTTCGACCCCCAACTCCACCCCCTCCCACAACGCCGCCGCCACCCCCACCAACTCAACCCCACCACCACCCAAACGTTGTCGTTTCCAACCCTACCCTTACCCCCACCCCCGCCGCATTCGCCTCTTCATCTTCTACTTCTCTCACCATCGCAGACAGCAATGCCCCACAACAACAGCGAAAGAAGCGCTCCCGACTGACGAGACCCGAGGACGCAGATGATGACAACCCGGCCAACAAGCGGCCCAAGCCCGCAAAGAAACCCGACCCGTCTGCGCCCAAGATCACCACGCCGTGCACCGAGTGCGGCCGCACATTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGCCACCCTGAACGACACTGGCGCGGCATCCAACCCCCGCCGGATTTCCAACGTGCTGGTTCGTCTTCGTCGAACCCGGTTCATAATCCCGAGTTGGAGCTCTCCATGAGTGAAGACGACCACGACGCCGCCTCTAGCTTGTTGATTCTCGCCGGCGGAACCGACCAGACACAGACACAGACACAACTCCTTCCTGGTACTAGTGGTTGTCGGGAAAACGACACTGGCGGCTGTCGTTTCGAGTGTTCGAGTTGCAAGAAAGTGTTTGGTTCCCACCAGGCCTTGGGTGGCCACAGGGCGAGTCACAAGAATGTGAAGGGTTGCTTCGCGATAACGAAGAATGATGTGGATGTTGATGAAGAGCATCATCATCATGATGGTCATGATCAGCATGGCAATGTGGTAGTGGCAGCTGGGCGTAGCTATGGCGTTGAGGGGAGCAATGTTGTTGAGAGCATGGAGGAGAATAGTAGGATGGTTACGGCGGTGGAGTCGGGGCATCAGTGTAGCATTTGTTGGAGGGTGTTTTCGAGCGGGCAAGCTTTGGGAGGGCACAAGAGGTGTCATTGGGAGAGAGGAGAAGAGGCATCAGTGGTGATGACACAATTTGGGATGAGCAGTAGTACCGTTAATTCTGGTGGGCTGGACTTGAACTTGCCTCCTTCTGCTTCTGCTTCTGTTGCTCCTTCTCTTTCTGCTTCCGCTGCTCCTGCTGCTTCTGCTTCTGCTGCTCCTGCTGCTGCTGCTGCTTCTGCTCCTGCAAGTGAAGATGATCAATGCTCGTCGTATTCTTCGCCCGGCCTGGGTTTGGATTTGAGGTTGGGTCTTTGA

Protein Analysis

404

Amino Acids

42.7

Weight (kDa)

6.14

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 107 - 131 4.8e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 206 - 230 8.7e-10 C2H2-type zinc finger
zf-C2H2_6 PF13912 294 - 318 1.5e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 915
AccII CGCG 2 cut(s) 405, 710
AclI AACGTT 1 cut(s) 105
AcoI YGGCCR 4 cut(s) 261, 337, 370, 670
AcyI GRCGYC 1 cut(s) 507
AdeI CACNNNGTG 2 cut(s) 324, 333
AfaI GTAC 2 cut(s) 580, 1006
AfeI AGCGCT 1 cut(s) 218
AfiI CCNNNNNNNGG 4 cut(s) 270, 664, 1184, 1189
AgsI TTSAA 1 cut(s) 1033
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 3 cut(s) 574, 657, 1182
AluBI AGCT 5 cut(s) 481, 519, 794, 804, 923
AluI AGCT 5 cut(s) 481, 519, 794, 804, 923
Alw21I GWGCWC 2 cut(s) 329, 483
Alw26I GTCTC 1 cut(s) 226
Alw44I GTGCAC 1 cut(s) 325
Ama87I CYCGRG 2 cut(s) 236, 470
Aor51HI AGCGCT 1 cut(s) 218
AoxI GGCC 7 cut(s) 261, 272, 337, 370, 660, 670, 1180
ApaLI GTGCAC 1 cut(s) 325
ApeKI GCWGC 9 cut(s) 381, 791, 1085, 1094, 1109, 1118, 1121, 1124, 1127
AspLEI GCGC 4 cut(s) 219, 307, 381, 405
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 3 cut(s) 260, 458, 1179
AsuHPI GGTGA 3 cut(s) 166, 307, 988
AvaI CYCGRG 2 cut(s) 236, 470
BaeGI GKGCMC 2 cut(s) 329, 936
BalI TGGCCA 1 cut(s) 672
BanII GRGCYC 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 438, 501
Bbv12I GWGCWC 2 cut(s) 329, 483
BbvI GCAGC 9 cut(s) 368, 803, 1072, 1081, 1096, 1105, 1108, 1111, 1114
BccI CCATC 3 cut(s) 185, 752, 850
BceAI ACGGC 2 cut(s) 307, 879
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 3 cut(s) 576, 659, 1184
BclI TGATCA 2 cut(s) 766, 1153
BcnI CCSGG 3 cut(s) 260, 458, 1179
BcoDI GTCTC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 2 cut(s) 516, 582
BfoI RGCGCY 1 cut(s) 220
Bme1390I CCNGG 6 cut(s) 260, 458, 576, 659, 1179, 1184
BmeT110I CYCGRG 2 cut(s) 236, 470
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 541, 652
BmrFI CCNGG 6 cut(s) 260, 458, 576, 659, 1179, 1184
BmsI GCATC 4 cut(s) 417, 754, 889, 977
BpiI GAAGAC 2 cut(s) 438, 501
BpuMI CCSGG 3 cut(s) 260, 458, 1179
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 237, 663, 1183
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 664, 1184, 1189
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 2 cut(s) 404, 610
Bse3DI GCAATG 3 cut(s) 196, 784, 829
BseBI CCWGG 3 cut(s) 576, 659, 1184
BseDI CCNNGG 3 cut(s) 237, 663, 1183
BseGI GGATG 4 cut(s) 408, 736, 861, 999
BseLI CCNNNNNNNGG 4 cut(s) 270, 664, 1184, 1189
BseMI GCAATG 3 cut(s) 196, 784, 829
BseNI ACTGG 2 cut(s) 404, 610
BseRI GAGGAG 2 cut(s) 857, 972
BseSI GKGCMC 2 cut(s) 329, 936
BseX3I CGGCCG 1 cut(s) 337
BseXI GCAGC 9 cut(s) 368, 803, 1072, 1081, 1096, 1105, 1108, 1111, 1114
BseYI CCCAGC 1 cut(s) 794
Bsh1236I CGCG 2 cut(s) 405, 710
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 7 cut(s) 263, 274, 339, 372, 662, 672, 1182
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 2 cut(s) 329, 483
BsiHKCI CYCGRG 2 cut(s) 236, 470
BsiSI CCGG 5 cut(s) 260, 422, 458, 534, 1179
BslI CCNNNNNNNGG 4 cut(s) 270, 664, 1184, 1189
BsmAI GTCTC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 7 cut(s) 263, 274, 339, 372, 662, 672, 1182
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 2 cut(s) 236, 470
Bsp1286I GDGCHC 3 cut(s) 329, 483, 936
Bsp143I GATC 3 cut(s) 312, 766, 1153
Bsp68I TCGCGA 1 cut(s) 710
BspANI GGCC 7 cut(s) 263, 274, 339, 372, 662, 672, 1182
BspFNI CGCG 2 cut(s) 405, 710
BspHI TCATGA 2 cut(s) 754, 763
BspLI GGNNCC 2 cut(s) 541, 652
BspQI GCTCTTC 1 cut(s) 735
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 915
BsrDI GCAATG 3 cut(s) 196, 784, 829
BsrFI RCCGGY 1 cut(s) 533
BsrI ACTGG 2 cut(s) 404, 610
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 3 cut(s) 237, 663, 1183
BssMI GATC 3 cut(s) 312, 766, 1153
BssNI GRCGYC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 3 cut(s) 576, 659, 1184
Bst4CI ACNGT 1 cut(s) 1009
Bst6I CTCTTC 4 cut(s) 160, 371, 735, 957
BstACI GRCGYC 1 cut(s) 507
BstAPI GCANNNNNTGC 1 cut(s) 333
BstC8I GCNNGC 4 cut(s) 282, 535, 917, 921
BstF5I GGATG 4 cut(s) 408, 736, 861, 999
BstFNI CGCG 2 cut(s) 405, 710
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 4 cut(s) 219, 307, 381, 405
BstKTI GATC 3 cut(s) 315, 769, 1156
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 312, 766, 1153
BstMCI CGRYCG 1 cut(s) 340
BstNI CCWGG 3 cut(s) 576, 659, 1184
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 6 cut(s) 258, 456, 574, 657, 1177, 1182
BstSLI GKGCMC 2 cut(s) 329, 936
BstUI CGCG 2 cut(s) 405, 710
BstV1I GCAGC 9 cut(s) 368, 803, 1072, 1081, 1096, 1105, 1108, 1111, 1114
BstV2I GAAGAC 2 cut(s) 438, 501
BstXI CCANNNNNNTGG 1 cut(s) 437
BstZI CGGCCG 1 cut(s) 337
BsuRI GGCC 7 cut(s) 263, 274, 339, 372, 662, 672, 1182
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 4 cut(s) 408, 736, 861, 999
BtsIMutI CAGTG 4 cut(s) 397, 603, 890, 978
BtuMI TCGCGA 1 cut(s) 710
Cac8I GCNNGC 4 cut(s) 282, 535, 917, 921
CciI TCATGA 2 cut(s) 754, 763
CciNI GCGGCCGC 1 cut(s) 337
CfoI GCGC 4 cut(s) 219, 307, 381, 405
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 2 cut(s) 251, 515
Csp6I GTAC 2 cut(s) 579, 1005
CviAII CATG 7 cut(s) 354, 376, 487, 755, 764, 773, 838
CviQI GTAC 2 cut(s) 579, 1005
DpnI GATC 3 cut(s) 314, 768, 1155
DpnII GATC 3 cut(s) 312, 766, 1153
DraIII CACNNNGTG 2 cut(s) 324, 333
EaeI YGGCCR 4 cut(s) 261, 337, 370, 670
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 4 cut(s) 160, 371, 735, 957
EarI CTCTTC 4 cut(s) 160, 371, 735, 957
EciI GGCGGA 1 cut(s) 552
Ecl136II GAGCTC 1 cut(s) 481
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 226
Eco47III AGCGCT 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 481
Eco88I CYCGRG 2 cut(s) 236, 470
EcoICRI GAGCTC 1 cut(s) 481
EcoRII CCWGG 3 cut(s) 574, 657, 1182
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 7 cut(s) 357, 379, 490, 758, 767, 776, 841
FaiI YATR 9 cut(s) 355, 377, 465, 488, 756, 765, 774, 807, 839
FalI AAGNNNNNCTT 4 cut(s) 350, 382, 689, 721
FatI CATG 7 cut(s) 353, 375, 486, 754, 763, 772, 837
FauI CCCGC 4 cut(s) 148, 289, 426, 908
FbaI TGATCA 2 cut(s) 766, 1153
FokI GGATG 4 cut(s) 395, 743, 868, 1006
FriOI GRGCYC 1 cut(s) 483
FspBI CTAG 2 cut(s) 516, 582
GlaI GCGC 4 cut(s) 218, 306, 380, 404
GsaI CCCAGC 1 cut(s) 798
HaeII RGCGCY 1 cut(s) 220
HaeIII GGCC 7 cut(s) 263, 274, 339, 372, 662, 672, 1182
HapII CCGG 5 cut(s) 260, 422, 458, 534, 1179
HgaI GACGC 2 cut(s) 251, 515
HhaI GCGC 4 cut(s) 219, 307, 381, 405
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 7 cut(s) 357, 379, 490, 758, 767, 776, 841
Hin6I GCGC 4 cut(s) 217, 305, 379, 403
HinP1I GCGC 4 cut(s) 217, 305, 379, 403
HindIII AAGCTT 1 cut(s) 921
HinfI GANTC 3 cut(s) 526, 682, 872
HpaII CCGG 5 cut(s) 260, 422, 458, 534, 1179
HphI GGTGA 3 cut(s) 166, 307, 988
Hpy166II GTNNAC 1 cut(s) 327
Hpy188III TCNNGA 7 cut(s) 14, 222, 470, 593, 709, 755, 764
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 4 cut(s) 20, 454, 509, 1168
HpyAV CCTTC 5 cut(s) 352, 581, 691, 1053, 1077
HpyCH4III ACNGT 1 cut(s) 1009
HpyCH4IV ACGT 2 cut(s) 105, 433
HpyCH4V TGCA 3 cut(s) 327, 636, 1142
HpySE526I ACGT 2 cut(s) 105, 433
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 7 cut(s) 357, 379, 490, 758, 767, 776, 841
HspAI GCGC 4 cut(s) 217, 305, 379, 403
KroI GCCGGC 1 cut(s) 533
KroNI GCCGGC 1 cut(s) 535
Ksp22I TGATCA 2 cut(s) 766, 1153
Kzo9I GATC 3 cut(s) 312, 766, 1153
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 7 cut(s) 224, 478, 819, 1069, 1093, 1117, 1141
Lsp1109I GCAGC 9 cut(s) 368, 803, 1072, 1081, 1096, 1105, 1108, 1111, 1114
LweI GCATC 4 cut(s) 417, 754, 889, 977
MaeI CTAG 2 cut(s) 516, 582
MaeII ACGT 2 cut(s) 105, 433
MaeIII GTNAC 2 cut(s) 683, 859
MalI GATC 3 cut(s) 314, 768, 1155
MbiI CCGCTC 1 cut(s) 915
MboI GATC 3 cut(s) 312, 766, 1153
MhlI GDGCHC 3 cut(s) 329, 483, 936
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 2 cut(s) 986, 1012
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 2 cut(s) 691, 881
MmeI TCCRAC 5 cut(s) 141, 436, 454, 456, 878
Mox20I TGGCCA 1 cut(s) 672
MreI CGCCGGCG 1 cut(s) 533
MroNI GCCGGC 1 cut(s) 533
MscI TGGCCA 1 cut(s) 672
MseI TTAA 1 cut(s) 1011
MslI CAYNNNNRTG 4 cut(s) 690, 753, 756, 777
Msp20I TGGCCA 1 cut(s) 672
MspA1I CMGCKG 2 cut(s) 794, 1085
MspI CCGG 5 cut(s) 260, 422, 458, 534, 1179
MspR9I CCNGG 6 cut(s) 260, 458, 576, 659, 1179, 1184
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 3 cut(s) 576, 659, 1184
MvnI CGCG 2 cut(s) 405, 710
NaeI GCCGGC 1 cut(s) 535
NciI CCSGG 3 cut(s) 260, 458, 1179
NdeII GATC 3 cut(s) 312, 766, 1153
NgoMIV GCCGGC 1 cut(s) 533
NlaIII CATG 7 cut(s) 357, 379, 490, 758, 767, 776, 841
NlaIV GGNNCC 2 cut(s) 541, 652
NmuCI GTSAC 1 cut(s) 683
NotI GCGGCCGC 1 cut(s) 337
NruI TCGCGA 1 cut(s) 710
NspI RCATGY 1 cut(s) 379
PagI TCATGA 2 cut(s) 754, 763
PceI AGGCCT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 735
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 449
PctI GAATGC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 526
PflMI CCANNNNNTGG 1 cut(s) 664
PleI GAGTC 2 cut(s) 690, 880
PpsI GAGTC 2 cut(s) 690, 880
Psp124BI GAGCTC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 105
Psp6I CCWGG 3 cut(s) 574, 657, 1182
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 3 cut(s) 574, 657, 1182
PspN4I GGNNCC 2 cut(s) 541, 652
PspPI GGNCC 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 794
RruI TCGCGA 1 cut(s) 710
RsaI GTAC 2 cut(s) 580, 1006
RsaNI GTAC 2 cut(s) 579, 1005
RseI CAYNNNNRTG 4 cut(s) 690, 753, 756, 777
SacI GAGCTC 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 1 cut(s) 1011
Sau3AI GATC 3 cut(s) 312, 766, 1153
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 691, 881
ScrFI CCNGG 6 cut(s) 260, 458, 576, 659, 1179, 1184
SduI GDGCHC 3 cut(s) 329, 483, 936
SfaNI GCATC 4 cut(s) 417, 754, 889, 977
SgrAI CRCCGGYG 1 cut(s) 533
SmiMI CAYNNNNRTG 4 cut(s) 690, 753, 756, 777
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 2 cut(s) 986, 1012
SseBI AGGCCT 1 cut(s) 662
SspMI CTAG 2 cut(s) 516, 582
SstI GAGCTC 1 cut(s) 483
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 6 cut(s) 258, 456, 574, 657, 1177, 1182
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 1009
TaiI ACGT 2 cut(s) 108, 436
TaqI TCGA 6 cut(s) 27, 34, 452, 621, 629, 911
TasI AATT 2 cut(s) 986, 1012
TauI GCSGC 9 cut(s) 67, 70, 146, 274, 339, 342, 408, 512, 612
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 1011
Tru9I TTAA 1 cut(s) 1011
TscAI CASTG 4 cut(s) 404, 610, 890, 978
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 9 cut(s) 381, 791, 1085, 1094, 1109, 1118, 1121, 1124, 1127
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 4 cut(s) 17, 147, 452, 753
TspRI CASTG 4 cut(s) 404, 610, 890, 978
Van91I CCANNNNNTGG 1 cut(s) 664
VneI GTGCAC 1 cut(s) 325
XceI RCATGY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XspI CTAG 2 cut(s) 516, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.