Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013225

Physical Location & Seq

Genomic Coordinates Reverse (-)

16787280 .. 16788283

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAACAACAATCATTCCTATGATGATCGCAGTTTTCACATTCCACTTCATCCTTCTAACACAAGCAACCCTAATCCAAATCTCCAGTTTGCTTTATCTTCAAGCTACGATCACAGTCCTAAGAAGAAACGCACCAAAACCGTTGCTTCATCCTCTAGTTCTTCACCAAAATCCGCGTCAAAACCAAAATACACCAAAAAACCAGACCCAAATGCCCCCAAAATCACACGTCCATGTACTGAATGTGGCAGAAAGTTTTGGTCTTGGAAGGCTCTCTTTGGTCACATGAGATGTCACCCTGAGCGTCAATGGCGTGGCATTAATCCTCCTCCTAACTACCGTGTGCCCACCGCGGCTTCTTCAAAACAGTTAAACCAGATATTACCAAATTGGGTCTCATTTATGTCCGAGGAAGACCATGAAGTCGCTTCTTGTCTCTTAATGCTGTCTAATGGTACACCATCATCATCGAGTATTGAACGGTTCGAGTGTGGAGGATGTAAGAAAGTGTTTGGATCACATCAGGCTTTAGGAGGACACAGAGCGAGTCATAAAAACGTTAAAGGCTGTTTCGCTATCACAAACGTAACCGATGATCCTATGACGGTTTCTACTTCTAGTGGGCATGATCATCAGGGAAAAATCCTTACGTTTTCAGGGCATCATAAGTGTAATATCTGTTTTAGAGTGTTCTCGAGTGGTCAAGCTTTAGGAGGTCACATGAGATGTCATTGGGAAAAGGAGGAGGAGCCGATGATCAGTGGTGCTTTGGATTTGAATGTTCCTCCAACAATACAGGATCTTTCTACTTCGGACACATCAGGGTGTTGTTTAGATCTTAGGTTAGGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

284

Amino Acids

31.36

Weight (kDa)

9.07

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	78 - 101	2.6e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	161 - 185	1e-07	C2H2-type zinc finger
zf-C2H2_6	PF13912	221 - 246	1.3e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17180 AT4G35280
fragaria_vesca	FvH4_2g16630
malus_domestica	MD05G1134500.v1.1 MD10G1139600.v1.1
prunus_persica	Prupe.8G178300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280711
rosa_laevigata	RLG00000013032
rosa_multiflora	Rmu_co8161748.1_g000001 Rmu_sc0000976.1_g000023 Rmu_sc0000976.1_g000024 Rmu_sc0013611.1_g000003
rosa_rugosa	Rorug06G0134100.1
rosa_samantha	Rh6AG246700 Rh6BG249000 Rh6CG250100 Rh6DG241700
rosa_wichuraiana	Rw6G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccII	CGCG	2 cut(s)	176, 353
AciI	CCGC	3 cut(s)	174, 351, 353
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	3 cut(s)	523, 590, 807
AfaI	GTAC	2 cut(s)	238, 457
AflIII	ACRYGT	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	102, 363, 479, 778
AjiI	CACGTC	1 cut(s)	230
AluBI	AGCT	2 cut(s)	105, 707
AluI	AGCT	2 cut(s)	105, 707
Alw26I	GTCTC	2 cut(s)	400, 440
AlwI	GGATC	3 cut(s)	523, 590, 807
Ama87I	CYCGRG	1 cut(s)	694
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AseI	ATTAAT	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	156, 287
AvaI	CYCGRG	1 cut(s)	694
BaeGI	GKGCMC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	420
BccI	CCATC	1 cut(s)	469
BclI	TGATCA	2 cut(s)	628, 756
BcoDI	GTCTC	2 cut(s)	400, 440
BfaI	CTAG	2 cut(s)	156, 618
BglII	AGATCT	1 cut(s)	835
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	694
BmgBI	CACGTC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	750
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	351, 408
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	351, 408
BseGI	GGATG	3 cut(s)	49, 149, 503
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	3 cut(s)	318, 758, 761
BseSI	GKGCMC	1 cut(s)	348
Bsh1236I	CGCG	2 cut(s)	176, 353
BsiHKCI	CYCGRG	1 cut(s)	694
BsmAI	GTCTC	2 cut(s)	400, 440
Bso31I	GGTCTC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
BspACI	CCGC	3 cut(s)	174, 351, 353
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	2 cut(s)	176, 353
BspLI	GGNNCC	1 cut(s)	750
BspPI	GGATC	3 cut(s)	523, 590, 807
BspTNI	GGTCTC	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	351, 408
BssMI	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
Bst4CI	ACNGT	6 cut(s)	116, 142, 341, 369, 483, 607
BstDEI	CTNAG	3 cut(s)	120, 300, 839
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	3 cut(s)	49, 149, 503
BstFNI	CGCG	2 cut(s)	176, 353
BstKTI	GATC	8 cut(s)	28, 112, 518, 598, 631, 759, 802, 838
BstMAI	GTCTC	2 cut(s)	400, 440
BstMBI	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	2 cut(s)	176, 353
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	799, 835
BstYI	RGATCY	2 cut(s)	799, 835
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	3 cut(s)	49, 149, 503
BtsIMutI	CAGTG	1 cut(s)	766
Cfr42I	CCGCGG	1 cut(s)	354
CseI	GACGC	2 cut(s)	165, 293
Csp6I	GTAC	2 cut(s)	237, 456
CviAII	CATG	5 cut(s)	234, 286, 419, 626, 721
CviJI	RGCY	7 cut(s)	105, 272, 356, 527, 567, 707, 751
CviKI_1	RGCY	7 cut(s)	105, 272, 356, 527, 567, 707, 751
CviQI	GTAC	2 cut(s)	237, 456
DdeI	CTNAG	3 cut(s)	120, 300, 839
DpnI	GATC	8 cut(s)	27, 111, 517, 597, 630, 758, 801, 837
DpnII	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	694
FaeI	CATG	5 cut(s)	237, 289, 422, 629, 724
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	5 cut(s)	233, 285, 418, 625, 720
FbaI	TGATCA	2 cut(s)	628, 756
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	3 cut(s)	36, 136, 510
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	156, 618
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	68
HgaI	GACGC	2 cut(s)	165, 293
Hin1II	CATG	5 cut(s)	237, 289, 422, 629, 724
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	2 cut(s)	547, 849
HphI	GGTGA	2 cut(s)	156, 287
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	2 cut(s)	409, 814
Hpy188III	TCNNGA	1 cut(s)	694
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	63, 262
HpyCH4III	ACNGT	6 cut(s)	116, 142, 341, 369, 483, 607
HpyCH4IV	ACGT	4 cut(s)	229, 558, 585, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	3 cut(s)	120, 300, 839
HpySE526I	ACGT	4 cut(s)	229, 558, 585, 650
Hsp92II	CATG	5 cut(s)	237, 289, 422, 629, 724
Ksp22I	TGATCA	2 cut(s)	628, 756
KspI	CCGCGG	1 cut(s)	354
Kzo9I	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
LmnI	GCTCC	1 cut(s)	748
LpnPI	CCDG	9 cut(s)	98, 216, 312, 389, 509, 620, 642, 782, 807
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	156, 618
MaeII	ACGT	4 cut(s)	229, 558, 585, 650
MaeIII	GTNAC	4 cut(s)	281, 293, 586, 716
MalI	GATC	8 cut(s)	27, 111, 517, 597, 630, 758, 801, 837
MboI	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
MboII	GAAGA	5 cut(s)	90, 136, 153, 351, 425
MflI	RGATCY	2 cut(s)	799, 835
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	388
MlyI	GAGTC	2 cut(s)	556, 843
MmeI	TCCRAC	1 cut(s)	812
MseI	TTAA	4 cut(s)	321, 371, 440, 561
MslI	CAYNNNNRTG	3 cut(s)	18, 232, 823
MspA1I	CMGCKG	1 cut(s)	353
MvnI	CGCG	2 cut(s)	176, 353
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
NlaIII	CATG	5 cut(s)	237, 289, 422, 629, 724
NlaIV	GGNNCC	1 cut(s)	750
NmuCI	GTSAC	3 cut(s)	281, 293, 716
PaeR7I	CTCGAG	1 cut(s)	694
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	2 cut(s)	555, 843
PpsI	GAGTC	2 cut(s)	555, 843
PshBI	ATTAAT	1 cut(s)	321
Psp1406I	AACGTT	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	750
PsuI	RGATCY	2 cut(s)	799, 835
RsaI	GTAC	2 cut(s)	238, 457
RsaNI	GTAC	2 cut(s)	237, 456
RseI	CAYNNNNRTG	3 cut(s)	18, 232, 823
SacII	CCGCGG	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	321, 371, 440, 561
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	8 cut(s)	25, 109, 515, 595, 628, 756, 799, 835
SchI	GAGTC	2 cut(s)	556, 843
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	107, 232, 561, 588, 653, 709, 718, 845
SfaNI	GCATC	1 cut(s)	670
Sfr274I	CTCGAG	1 cut(s)	694
Sfr303I	CCGCGG	1 cut(s)	354
SgrBI	CCGCGG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	694
SmiMI	CAYNNNNRTG	3 cut(s)	18, 232, 823
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	3 cut(s)	174, 351, 353
SspMI	CTAG	2 cut(s)	156, 618
TaaI	ACNGT	6 cut(s)	116, 142, 341, 369, 483, 607
TaiI	ACGT	4 cut(s)	232, 561, 588, 653
TaqI	TCGA	3 cut(s)	470, 486, 695
TasI	AATT	1 cut(s)	388
TatI	WGTACW	1 cut(s)	236
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	4 cut(s)	321, 371, 440, 561
Tru9I	TTAA	4 cut(s)	321, 371, 440, 561
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	3 cut(s)	281, 293, 716
Tsp45I	GTSAC	3 cut(s)	281, 293, 716
TspDTI	ATGAA	4 cut(s)	17, 38, 138, 435
TspRI	CASTG	1 cut(s)	766
VspI	ATTAAT	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	694
XspI	CTAG	2 cut(s)	156, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.