Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Forward (+)

7555586 .. 7558064

Gene Structure 2479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAATCAGGCTCAGGAGCTCCACCTTCACCTTCACCGACTGATCCTGGGCTTGATTTCAATGCTTTTGATTTCTCCGGCATGGCTGGGATCCTCAATGATCCAAGTATCAAGGAATTGGCTGAGCAAATAGCTAAAGATCCTTCATTTAACCAGTTAGCTGAGCAGCTTCAGAGATCTGTGCCAACCGGATCTCATGAAGGAGGTCTACCTAACTTTGATCCACAACAGTATATGCAGACAATGCAGCAGGTTATGGAGAATCCTGAGTTTAGAACAATGGCTGAGCGTCTTGGTAACGCTTTGGTGCAGGATCCACAAATGTCTCCCTTTTTGGAGGCTCTTGGTAACCCTGCAGCATCAGAGCAGTTTGCAGAGCGTATGGCGCAAATGAAAGAAGATCCTGAATTGAAACCTATACTAGCTGAGATTGATGCTGGTGGTCCTTCTGCTATGATGAAGTACTGGAATGATAAAGATGTGTTGGCAAAGCTGGGTGAAGCAATGGGTATAGCTGTTGGAGCAGACCAGACTGTTGCAGCTGAACCTGAAGAGGCCGAAGAAGGGGAAGAGGAAGAGTCTATTGTTCACCAGACCGCTAGTCTTGGTGATGTCGAGGGTTTGAAAGCTGCCTTGGCATCTGGTGGGAACAAAGATGAAGAAGACTCTGAAGGAAGGACTGCTTTGCATTTTGCATGTGGATACGGCGAGGTGAGATGTGCTCAGGTTCTTCTGGATGCTGGAGCAAATGCAAATGCGATTGACAAAAACAAGAACACACCATTGCACTATGCTGCTGGTTATGGAAGGAAAGAGTGTGTAAGCCTCCTCCTAGAGAATGGTGCTGCAGTAACTCAGCAAAACATGGACAATAAAAATCCCATTGATGTGGCCAGGCTAAACAATCAGCTAGATGTGGTGAAACTACTTGAGAAGGACGCTTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

344

Amino Acids

36.9

Weight (kDa)

4.37

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	155 - 198	1.4e-08	STI1/HOP, DP domain
Ank_KRIT1	PF24521	222 - 331	2e-06	KRIT1 ankyrin-repeats domain
Ank_2	PF12796	225 - 316	1.2e-19	Ankyrin repeats (3 copies)
Ank	PF00023	253 - 284	5.9e-07	Ankyrin repeat
Ank_4	PF13637	264 - 306	6.1e-09	Ankyrin repeats (many copies)
Ank_5	PF13857	272 - 326	1.4e-08	Ankyrin repeats (many copies)
Ank_2	PF12796	277 - 338	4.1e-11	Ankyrin repeats (3 copies)
Ank	PF00023	285 - 316	1.4e-07	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	1 cut(s)	681
AcoI	YGGCCR	1 cut(s)	975
AcuI	CTGAAG	4 cut(s)	21, 239, 654, 774
AfaI	GTAC	2 cut(s)	76, 548
AfiI	CCNNNNNNNGG	2 cut(s)	92, 648
AgsI	TTSAA	4 cut(s)	9, 145, 496, 709
AhdI	GACNNNNNGTC	1 cut(s)	684
AjnI	CCWGG	2 cut(s)	130, 977
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
Alw21I	GWGCWC	2 cut(s)	106, 808
Alw26I	GTCTC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	639, 975
ApeKI	GCWGC	7 cut(s)	250, 331, 440, 623, 713, 878, 929
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	7 cut(s)	105, 111, 593, 665, 704, 808, 1015
AvaII	GGWCC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	977
BamHI	GGATCC	2 cut(s)	174, 397
BanII	GRGCYC	1 cut(s)	106
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	2 cut(s)	106, 808
BbvI	GCAGC	7 cut(s)	262, 343, 452, 635, 700, 865, 916
BceAI	ACGGC	1 cut(s)	805
BciT130I	CCWGG	2 cut(s)	132, 979
BciVI	GTATCC	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	4 cut(s)	506, 684, 917, 995
BfmI	CTRYAG	2 cut(s)	438, 930
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	779
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	7 cut(s)	251, 332, 441, 624, 714, 879, 930
BlpI	GCTNAGC	3 cut(s)	207, 246, 369
BlsI	GCNGC	7 cut(s)	252, 333, 442, 625, 715, 880, 931
BmcAI	AGTACT	2 cut(s)	76, 548
Bme1390I	CCNGG	2 cut(s)	132, 979
Bme18I	GGWCC	1 cut(s)	527
BmeRI	GACNNNNNGTC	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	2 cut(s)	176, 399
BmrFI	CCNGG	2 cut(s)	132, 979
BmsI	GCATC	4 cut(s)	452, 508, 731, 811
BpiI	GAAGAC	1 cut(s)	753
BplI	GAGNNNNNCTC	2 cut(s)	790, 822
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	2 cut(s)	97, 807
Bpu1102I	GCTNAGC	3 cut(s)	207, 246, 369
BpuEI	CTTGAG	1 cut(s)	1034
BsaJI	CCNNGG	3 cut(s)	57, 131, 717
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 648
Bse1I	ACTGG	2 cut(s)	238, 554
Bse3DI	GCAATG	2 cut(s)	594, 866
BseBI	CCWGG	2 cut(s)	132, 979
BseDI	CCNNGG	3 cut(s)	57, 131, 717
BseGI	GGATG	1 cut(s)	826
BseLI	CCNNNNNNNGG	2 cut(s)	92, 648
BseMI	GCAATG	2 cut(s)	594, 866
BseMII	CTCAG	9 cut(s)	27, 111, 198, 237, 342, 360, 501, 821, 953
BseNI	ACTGG	2 cut(s)	238, 554
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	7 cut(s)	262, 343, 452, 635, 700, 865, 916
BseYI	CCCAGC	2 cut(s)	170, 577
BsgI	GTGCAG	1 cut(s)	413
BshFI	GGCC	2 cut(s)	641, 977
BsiHKAI	GWGCWC	2 cut(s)	106, 808
BsiSI	CCGG	2 cut(s)	162, 273
BslI	CCNNNNNNNGG	2 cut(s)	92, 648
BsmAI	GTCTC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	641, 977
Bsp1286I	GDGCHC	2 cut(s)	106, 808
Bsp143I	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
Bsp1720I	GCTNAGC	3 cut(s)	207, 246, 369
BspACI	CCGC	1 cut(s)	681
BspANI	GGCC	2 cut(s)	641, 977
BspCNI	CTCAG	9 cut(s)	26, 110, 199, 238, 343, 361, 502, 820, 952
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	176, 399
BspMAI	CTGCAG	2 cut(s)	442, 934
BspMI	ACCTGC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	594, 866
BsrI	ACTGG	2 cut(s)	238, 554
BssECI	CCNNGG	3 cut(s)	57, 131, 717
BssMI	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
BssT1I	CCWWGG	2 cut(s)	57, 717
Bst2UI	CCWGG	2 cut(s)	132, 979
Bst4CI	ACNGT	2 cut(s)	315, 619
Bst6I	CTCTTC	4 cut(s)	57, 630, 648, 654
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstDEI	CTNAG	9 cut(s)	13, 97, 207, 246, 351, 369, 510, 807, 939
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	9 cut(s)	130, 177, 187, 226, 263, 278, 307, 400, 487
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 469, 605, 719
BstNI	CCWGG	2 cut(s)	132, 979
BstNSI	RCATGY	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	130, 977
BstSFI	CTRYAG	2 cut(s)	438, 930
BstV1I	GCAGC	7 cut(s)	262, 343, 452, 635, 700, 865, 916
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	6 cut(s)	174, 223, 260, 275, 397, 484
BstXI	CCANNNNNNTGG	1 cut(s)	973
BstYI	RGATCY	6 cut(s)	174, 223, 260, 275, 397, 484
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	2 cut(s)	641, 977
BtsCI	GGATG	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	527
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	75, 547
CviAII	CATG	4 cut(s)	166, 281, 780, 949
CviQI	GTAC	2 cut(s)	75, 547
DdeI	CTNAG	9 cut(s)	13, 97, 207, 246, 351, 369, 510, 807, 939
DpnI	GATC	9 cut(s)	129, 176, 186, 225, 262, 277, 306, 399, 486
DpnII	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
DriI	GACNNNNNGTC	1 cut(s)	684
EaeI	YGGCCR	1 cut(s)	975
Eam1104I	CTCTTC	4 cut(s)	57, 630, 648, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	684
EarI	CTCTTC	4 cut(s)	57, 630, 648, 654
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	57, 717
Eco24I	GRGCYC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	4 cut(s)	21, 239, 654, 774
Eco91I	GGTNACC	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	130, 977
EcoT14I	CCWWGG	2 cut(s)	57, 717
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	57, 717
FaeI	CATG	4 cut(s)	169, 284, 783, 952
FalI	AAGNNNNNCTT	2 cut(s)	751, 783
FatI	CATG	4 cut(s)	165, 280, 779, 948
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	7 cut(s)	251, 332, 441, 624, 714, 879, 930
FokI	GGATG	1 cut(s)	833
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	7 cut(s)	251, 332, 441, 624, 714, 879, 930
FspBI	CTAG	4 cut(s)	506, 684, 917, 995
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	7 cut(s)	251, 332, 441, 624, 714, 879, 930
GsaI	CCCAGC	2 cut(s)	174, 581
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	2 cut(s)	641, 977
HapII	CCGG	2 cut(s)	162, 273
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	4 cut(s)	169, 284, 783, 952
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	4 cut(s)	89, 346, 662, 749
HpaII	CCGG	2 cut(s)	162, 273
HphI	GGTGA	7 cut(s)	105, 111, 593, 665, 704, 808, 1015
Hpy166II	GTNNAC	2 cut(s)	293, 673
Hpy188I	TCNGA	6 cut(s)	16, 40, 258, 448, 754, 1034
Hpy188III	TCNNGA	5 cut(s)	99, 281, 350, 488, 818
Hpy8I	GTNNAC	2 cut(s)	293, 673
HpyCH4III	ACNGT	2 cut(s)	315, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 469, 605, 719
HpyF3I	CTNAG	9 cut(s)	13, 97, 207, 246, 351, 369, 510, 807, 939
Hsp92II	CATG	4 cut(s)	169, 284, 783, 952
HspAI	GCGC	1 cut(s)	470
Kzo9I	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
LmnI	GCTCC	4 cut(s)	101, 109, 605, 827
Lsp1109I	GCAGC	7 cut(s)	262, 343, 452, 635, 700, 865, 916
LweI	GCATC	4 cut(s)	452, 508, 731, 811
MaeI	CTAG	4 cut(s)	506, 684, 917, 995
MaeIII	GTNAC	3 cut(s)	380, 431, 934
MalI	GATC	9 cut(s)	129, 176, 186, 225, 262, 277, 306, 399, 486
MboI	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
MboII	GAAGA	9 cut(s)	74, 494, 647, 656, 665, 671, 755, 758, 806
MflI	RGATCY	6 cut(s)	174, 223, 260, 275, 397, 484
MhlI	GDGCHC	2 cut(s)	106, 808
MlsI	TGGCCA	1 cut(s)	977
MluCI	AATT	2 cut(s)	200, 491
MluNI	TGGCCA	1 cut(s)	977
MlyI	GAGTC	2 cut(s)	671, 743
MmeI	TCCRAC	1 cut(s)	583
Mox20I	TGGCCA	1 cut(s)	977
MscI	TGGCCA	1 cut(s)	977
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	971
Msp20I	TGGCCA	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	2 cut(s)	162, 273
MspR9I	CCNGG	2 cut(s)	132, 979
MvaI	CCWGG	2 cut(s)	132, 979
MwoI	GCNNNNNNNGC	4 cut(s)	328, 469, 605, 719
NdeII	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
NlaIII	CATG	4 cut(s)	169, 284, 783, 952
NlaIV	GGNNCC	2 cut(s)	176, 399
NspI	RCATGY	1 cut(s)	783
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	89, 346
PkrI	GCNGC	7 cut(s)	252, 333, 442, 625, 715, 880, 931
PleI	GAGTC	2 cut(s)	670, 743
PpsI	GAGTC	2 cut(s)	670, 743
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	130, 977
PspEI	GGTNACC	1 cut(s)	431
PspFI	CCCAGC	2 cut(s)	170, 577
PspGI	CCWGG	2 cut(s)	130, 977
PspN4I	GGNNCC	2 cut(s)	176, 399
PspPI	GGNCC	1 cut(s)	527
PstI	CTGCAG	2 cut(s)	442, 934
PsuI	RGATCY	6 cut(s)	174, 223, 260, 275, 397, 484
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	2 cut(s)	76, 548
RsaNI	GTAC	2 cut(s)	75, 547
RseI	CAYNNNNRTG	1 cut(s)	971
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	7 cut(s)	251, 332, 441, 624, 714, 879, 930
Sau3AI	GATC	9 cut(s)	127, 174, 184, 223, 260, 275, 304, 397, 484
Sau96I	GGNCC	1 cut(s)	527
ScaI	AGTACT	2 cut(s)	76, 548
SchI	GAGTC	2 cut(s)	671, 743
ScrFI	CCNGG	2 cut(s)	132, 979
SduI	GDGCHC	2 cut(s)	106, 808
SfaNI	GCATC	4 cut(s)	452, 508, 731, 811
SfcI	CTRYAG	2 cut(s)	438, 930
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	2 cut(s)	200, 491
SsiI	CCGC	1 cut(s)	681
SspMI	CTAG	4 cut(s)	506, 684, 917, 995
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	130, 977
StyI	CCWWGG	2 cut(s)	57, 717
TaaI	ACNGT	2 cut(s)	315, 619
TaqI	TCGA	1 cut(s)	699
TasI	AATT	2 cut(s)	200, 491
TatI	WGTACW	2 cut(s)	74, 546
TfiI	GAWTC	2 cut(s)	89, 346
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	7 cut(s)	250, 331, 440, 623, 713, 878, 929
TspDTI	ATGAA	5 cut(s)	219, 297, 491, 557, 756
VpaK11BI	GGWCC	1 cut(s)	527
XceI	RCATGY	1 cut(s)	783
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	4 cut(s)	506, 684, 917, 995
ZrmI	AGTACT	2 cut(s)	76, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.