Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

18186623 .. 18188836

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14610.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACTGGCTTGCTGAATGATCCTAGCATTAAGGAACTAGCTGAACAGATATCAAAAGATCCTTCATTCAATCAGATGGCAGACCAACTTCAGAAAACTTTTGAAGGTGTGTCAGTTGATGAAGGTGTCCCTCAGTTTGATAGCCAACAATACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTCATGACCATGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCGATCTATGAATACAATGCTTGAGAGTTTCGCCAATCCATCAAACAAAGATCAGCTTGAGGAACGCATGTCACGTATCAAAGAAGATCCTTCTTTGAAGCCTATTTTGGAAGAAATAGAAACTGGTGGTCCAGCTGCTATGATGAGATACTGGAACGATAAAGATGTTTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGGATGCAGCTACTTCTGCTGAACCACCAGAAGAAGCTGAAGATGCTGGAAATGAAGATGAATCAATTGTTCATCAAACTGCTAGTGTTGGTGATGTGGAGGGTTTGAAAGCTGCCCTAGCCTCTGGTGCTGACAAGGATGAGGAAGATTCAGAAGGGAGGACAGCATTACATTTTGCATGTGGATATGGTGAGGTGAAGTGTGCTCAAGTTCTTCTCGAGGCTGGAGCAAGAGTTGATGCTCTTGATAAGAACAAAAACACCGCACTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGCGTGGCACTTCTACTTGAGAATGGCGCAGCTGTCACTCTCCAGAACATGGATGGCAAGACTCCGATCGACGTTGCCAAGCTGAACAACCAAAACGACGTACTAAAGTTGCTCGAGAAGGACGCCTTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

291

Amino Acids

31.6

Weight (kDa)

4.4

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	787
AciI	CCGC	1 cut(s)	702
AclWI	GGATC	4 cut(s)	14, 53, 240, 314
AcuI	CTGAAG	2 cut(s)	74, 498
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	1 cut(s)	787
AgsI	TTSAA	4 cut(s)	70, 104, 331, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	8 cut(s)	41, 289, 368, 449, 476, 551, 770, 820
AluI	AGCT	8 cut(s)	41, 289, 368, 449, 476, 551, 770, 820
Alw21I	GWGCWC	1 cut(s)	646
AlwI	GGATC	4 cut(s)	14, 53, 240, 314
Ama87I	CYCGRG	2 cut(s)	656, 851
ApeKI	GCWGC	5 cut(s)	368, 446, 551, 716, 767
AspLEI	GCGC	2 cut(s)	210, 767
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	542, 641, 646
AvaI	CYCGRG	2 cut(s)	656, 851
AvaII	GGWCC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	5 cut(s)	355, 458, 538, 728, 779
BccI	CCATC	3 cut(s)	70, 280, 785
BfaI	CTAG	4 cut(s)	24, 38, 522, 557
BfoI	RGCGCY	1 cut(s)	211
BisI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	370, 448, 553, 718, 769
Bme18I	GGWCC	1 cut(s)	362
BmeT110I	CYCGRG	2 cut(s)	656, 851
BmgT120I	GGNCC	1 cut(s)	362
BmsI	GCATC	4 cut(s)	216, 433, 472, 667
BpmI	CTGGAG	2 cut(s)	684, 764
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	4 cut(s)	275, 311, 630, 776
Bsa29I	ATCGAT	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	198, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	3 cut(s)	10, 361, 389
Bse3DI	GCAATG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	198, 211
BseGI	GGATG	3 cut(s)	448, 583, 796
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	146, 195, 200
BseNI	ACTGG	3 cut(s)	10, 361, 389
BseXI	GCAGC	5 cut(s)	355, 458, 538, 728, 779
Bsh1285I	CGRYCG	1 cut(s)	807
BshVI	ATCGAT	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	807
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	2 cut(s)	656, 851
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	743
BsoBI	CYCGRG	2 cut(s)	656, 851
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
Bsp1720I	GCTNAGC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	145, 196, 199
BspDI	ATCGAT	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	192
BspPI	GGATC	4 cut(s)	14, 53, 240, 314
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	3 cut(s)	10, 361, 389
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	2 cut(s)	198, 211
BssMI	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
BssNI	GRCGYC	1 cut(s)	861
BssT1I	CCWWGG	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	861
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	132, 186, 204
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	448, 583, 796
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	210, 767
BstKTI	GATC	7 cut(s)	22, 61, 235, 239, 286, 322, 807
BstMBI	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
BstMCI	CGRYCG	1 cut(s)	807
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 482, 557, 566
BstNSI	RCATGY	2 cut(s)	304, 621
BstV1I	GCAGC	5 cut(s)	355, 458, 538, 728, 779
BstX2I	RGATCY	2 cut(s)	58, 319
BstYI	RGATCY	2 cut(s)	58, 319
Bsu15I	ATCGAT	1 cut(s)	235
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	448, 583, 796
Cac8I	GCNNGC	1 cut(s)	11
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	210, 767
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	6 cut(s)	163, 193, 199, 301, 618, 787
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	3 cut(s)	132, 186, 204
DpnI	GATC	7 cut(s)	21, 60, 234, 238, 285, 321, 806
DpnII	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
Eco130I	CCWWGG	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	74, 498
Eco88I	CYCGRG	2 cut(s)	656, 851
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	6 cut(s)	166, 196, 202, 304, 621, 790
FalI	AAGNNNNNCTT	3 cut(s)	273, 305, 848
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	6 cut(s)	162, 192, 198, 300, 617, 786
Fnu4HI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
FokI	GGATG	3 cut(s)	455, 590, 803
Fsp4HI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
FspBI	CTAG	4 cut(s)	24, 38, 522, 557
GlaI	GCGC	2 cut(s)	209, 766
GluI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
GsuI	CTGGAG	2 cut(s)	684, 764
HaeII	RGCGCY	1 cut(s)	211
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	2 cut(s)	210, 767
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	6 cut(s)	166, 196, 202, 304, 621, 790
Hin6I	GCGC	2 cut(s)	208, 765
HinP1I	GCGC	2 cut(s)	208, 765
HinfI	GANTC	4 cut(s)	181, 500, 587, 799
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	3 cut(s)	542, 641, 646
Hpy188I	TCNGA	4 cut(s)	75, 93, 592, 804
Hpy188III	TCNNGA	5 cut(s)	193, 656, 683, 781, 853
Hpy99I	CGWCG	2 cut(s)	812, 839
HpyAV	CCTTC	7 cut(s)	72, 98, 116, 333, 587, 727, 850
HpyCH4IV	ACGT	3 cut(s)	307, 810, 837
HpyCH4V	TGCA	9 cut(s)	166, 178, 221, 229, 406, 434, 446, 617, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 482, 557, 566
HpyF3I	CTNAG	3 cut(s)	132, 186, 204
HpySE526I	ACGT	3 cut(s)	307, 810, 837
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	6 cut(s)	166, 196, 202, 304, 621, 790
HspAI	GCGC	2 cut(s)	208, 765
Kzo9I	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	5 cut(s)	355, 458, 538, 728, 779
LweI	GCATC	4 cut(s)	216, 433, 472, 667
MaeI	CTAG	4 cut(s)	24, 38, 522, 557
MaeII	ACGT	3 cut(s)	307, 810, 837
MaeIII	GTNAC	2 cut(s)	303, 772
MalI	GATC	7 cut(s)	21, 60, 234, 238, 285, 321, 806
MboI	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
MboII	GAAGA	7 cut(s)	329, 356, 482, 491, 506, 596, 644
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	2 cut(s)	58, 319
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	793
Mph1103I	ATGCAT	1 cut(s)	223
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	368, 770
MspI	CCGG	1 cut(s)	720
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	743
MwoI	GCNNNNNNNGC	4 cut(s)	455, 482, 557, 566
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
NlaIII	CATG	6 cut(s)	166, 196, 202, 304, 621, 790
NmuCI	GTSAC	2 cut(s)	303, 772
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	2 cut(s)	304, 621
PaeR7I	CTCGAG	2 cut(s)	656, 851
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	181, 500, 587
PflMI	CCANNNNNTGG	1 cut(s)	787
PkrI	GCNGC	5 cut(s)	370, 448, 553, 718, 769
Ple19I	CGATCG	1 cut(s)	807
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
Ppu21I	YACGTR	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	362
PsuI	RGATCY	2 cut(s)	58, 319
PvuI	CGATCG	1 cut(s)	807
PvuII	CAGCTG	2 cut(s)	368, 770
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	5 cut(s)	369, 447, 552, 717, 768
Sau3AI	GATC	7 cut(s)	19, 58, 232, 236, 283, 319, 804
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	1 cut(s)	793
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	4 cut(s)	216, 433, 472, 667
Sfr274I	CTCGAG	2 cut(s)	656, 851
SinI	GGWCC	1 cut(s)	362
SlaI	CTCGAG	2 cut(s)	656, 851
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	6 cut(s)	254, 290, 645, 656, 755, 851
SmoI	CTYRAG	6 cut(s)	254, 290, 645, 656, 755, 851
Sse9I	AATT	1 cut(s)	504
SsiI	CCGC	1 cut(s)	702
SspMI	CTAG	4 cut(s)	24, 38, 522, 557
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	3 cut(s)	310, 813, 840
TaqI	TCGA	4 cut(s)	235, 657, 807, 852
TasI	AATT	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	181, 500, 587
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	2 cut(s)	303, 772
TseI	GCWGC	5 cut(s)	368, 446, 551, 716, 767
Tsp45I	GTSAC	2 cut(s)	303, 772
TspDTI	ATGAA	8 cut(s)	54, 135, 181, 257, 500, 507, 513, 698
Van91I	CCANNNNNTGG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	2 cut(s)	304, 621
XcmI	CCANNNNNNNNNTGG	1 cut(s)	788
XhoI	CTCGAG	2 cut(s)	656, 851
XspI	CTAG	4 cut(s)	24, 38, 522, 557
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.