Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

18295298 .. 18299531

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G184200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTTCTGCGCAAAAGGATTTGCCTGCGGCTGGTGAAAAGCCAGTTTCAACAGAGAACAAAAGCTCCAAATCTGAAACAGAGGTCAAAAGTCCTAAGTCTGAAACTTCCTCTGGAGATTCACAGTCAGGACAAACAAGAGCCGCCCCTTTCCAACTTCCAGAAGCCGGATTTGCTGCTCCCAATCCTTTTGATTTCTCTGCCATGACTGGCTTGCTGAATGATCCAAGCATTAAGGAACTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCAGACCAACTTCAGAAAACTTTTCAAGGTGCAACAATTGATGAGGGTGTCCCTCAGTTTGATAGCCAACAATATTATTCCACCATGCAACAGGTTATGCAGAATCCTCAATTCATGACCATGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCCATCTATGAATACCATGCTCGAGAGTTTTGCAAATCCAACAAACAAAGATCAGCTTGAAGAACGTATGTCACGTATCAAAGAAGATCCTTCTTTGAAGCCTATTTTAGAAGAGATAGAGACTGGTGGTCCAGCTGCCATGATGAGATACTGGAATGATAAAGAGGTTTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTCCAGGAGATGCAGCTACTTCTGCTGACAATTCTGGACCAGAAGAAGTAGAAGATGCTGGAAATGAGGATGAATCAATTGTTCATCACACTGCGAGTGTTGGTGATGTGGAGGGTTTGAAAAGTGCCCTAGCCTCTGGTGCTGACAAGGATGAGGAAGATTCAGAAGGAAGGACAGCACTGCATTTTGCTTGTGGATATGGTGAGGTGAAGTGTGCTCAAGTACTTCTTGAGGCTGGAGCAAGAGTGGATGCTCTGGATAAGAACAAGAACACGGCGCTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGTGTGGCTCTTCTATTAGAGAATGGCGCTGCTGTCACTCTCCAGAACATGGATGGAAAGACTCCAATCGACGTTGCGAAGCTGAACAGCCAAAACGATGTGCTAAAGTTGCTCGAGAAGGATGCCTTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

362

Amino Acids

38.82

Weight (kDa)

4.48

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	1000
AciI	CCGC	2 cut(s)	29, 144
AclWI	GGATC	5 cut(s)	218, 257, 431, 444, 518
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	864
AfiI	CCNNNNNNNGG	3 cut(s)	32, 167, 1000
AgsI	TTSAA	6 cut(s)	51, 274, 308, 497, 535, 760
AhdI	GACNNNNNGTC	1 cut(s)	564
AjnI	CCWGG	1 cut(s)	643
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	6 cut(s)	66, 245, 493, 572, 656, 1033
AluI	AGCT	6 cut(s)	66, 245, 493, 572, 656, 1033
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	5 cut(s)	218, 257, 431, 444, 518
Ama87I	CYCGRG	2 cut(s)	458, 1064
ApeKI	GCWGC	5 cut(s)	176, 572, 653, 929, 980
AspLEI	GCGC	4 cut(s)	13, 414, 919, 980
AspS9I	GGNCC	2 cut(s)	566, 677
AsuHPI	GGTGA	4 cut(s)	47, 755, 854, 859
AvaI	CYCGRG	2 cut(s)	458, 1064
AvaII	GGWCC	2 cut(s)	566, 677
BaeGI	GKGCMC	1 cut(s)	769
BamHI	GGATCC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	5 cut(s)	163, 559, 665, 941, 967
BccI	CCATC	3 cut(s)	274, 448, 998
BceAI	ACGGC	1 cut(s)	930
BcgI	CGANNNNNNTGC	3 cut(s)	449, 483, 1055
BciT130I	CCWGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	242, 770
BfoI	RGCGCY	3 cut(s)	415, 920, 981
BisI	GCNGC	7 cut(s)	30, 144, 177, 573, 654, 930, 981
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	7 cut(s)	31, 145, 178, 574, 655, 931, 982
BmcAI	AGTACT	1 cut(s)	864
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	2 cut(s)	566, 677
BmeRI	GACNNNNNGTC	1 cut(s)	564
BmeT110I	CYCGRG	2 cut(s)	458, 1064
BmgT120I	GGNCC	2 cut(s)	566, 677
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	5 cut(s)	420, 640, 685, 880, 1063
BpmI	CTGGAG	3 cut(s)	135, 897, 977
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	843, 890
BsaAI	YACGTR	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	402, 415
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 870, 900
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 167, 1000
Bse118I	RCCGGY	1 cut(s)	932
Bse1I	ACTGG	4 cut(s)	44, 214, 565, 593
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	402, 415
BseGI	GGATG	5 cut(s)	715, 796, 895, 1009, 1078
BseLI	CCNNNNNNNGG	3 cut(s)	32, 167, 1000
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	2 cut(s)	350, 399
BseNI	ACTGG	4 cut(s)	44, 214, 565, 593
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	5 cut(s)	163, 559, 665, 941, 967
BsiHKAI	GWGCWC	1 cut(s)	859
BsiHKCI	CYCGRG	2 cut(s)	458, 1064
BsiSI	CCGG	2 cut(s)	168, 933
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	32, 167, 1000
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	317
BsoBI	CYCGRG	2 cut(s)	458, 1064
Bsp1286I	GDGCHC	2 cut(s)	769, 859
Bsp143I	GATC	5 cut(s)	223, 262, 436, 487, 523
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	29, 144
BspCNI	CTCAG	2 cut(s)	349, 400
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	5 cut(s)	218, 257, 431, 444, 518
BspQI	GCTCTTC	1 cut(s)	966
BsrDI	GCAATG	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	932
BsrI	ACTGG	4 cut(s)	44, 214, 565, 593
BssAI	RCCGGY	1 cut(s)	932
BssECI	CCNNGG	2 cut(s)	402, 415
BssMI	GATC	5 cut(s)	223, 262, 436, 487, 523
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	543, 966
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	27, 215
BstDEI	CTNAG	3 cut(s)	96, 336, 408
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	5 cut(s)	715, 796, 895, 1009, 1078
BstH2I	RGCGCY	3 cut(s)	415, 920, 981
BstHHI	GCGC	4 cut(s)	13, 414, 919, 980
BstKTI	GATC	5 cut(s)	226, 265, 439, 490, 526
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	5 cut(s)	223, 262, 436, 487, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 662, 779, 1060
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	5 cut(s)	163, 559, 665, 941, 967
BstX2I	RGATCY	3 cut(s)	262, 436, 523
BstYI	RGATCY	3 cut(s)	262, 436, 523
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	5 cut(s)	715, 796, 895, 1009, 1078
BtsI	GCAGTG	2 cut(s)	729, 818
BtsIMutI	CAGTG	2 cut(s)	729, 818
Cac8I	GCNNGC	2 cut(s)	27, 215
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	4 cut(s)	13, 414, 919, 980
Cfr10I	RCCGGY	1 cut(s)	932
Cfr13I	GGNCC	2 cut(s)	566, 677
Csp6I	GTAC	1 cut(s)	863
CviAII	CATG	7 cut(s)	205, 367, 397, 403, 454, 577, 1000
CviQI	GTAC	1 cut(s)	863
DdeI	CTNAG	3 cut(s)	96, 336, 408
DpnI	GATC	5 cut(s)	225, 264, 438, 489, 525
DpnII	GATC	5 cut(s)	223, 262, 436, 487, 523
DriI	GACNNNNNGTC	1 cut(s)	564
Eam1104I	CTCTTC	2 cut(s)	543, 966
Eam1105I	GACNNNNNGTC	1 cut(s)	564
EarI	CTCTTC	2 cut(s)	543, 966
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	566, 677
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	458, 1064
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	7 cut(s)	208, 370, 400, 406, 457, 580, 1003
FalI	AAGNNNNNCTT	5 cut(s)	477, 509, 852, 884, 1061
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	7 cut(s)	204, 366, 396, 402, 453, 576, 999
Fnu4HI	GCNGC	7 cut(s)	30, 144, 177, 573, 654, 930, 981
FokI	GGATG	4 cut(s)	722, 803, 902, 1016
Fsp4HI	GCNGC	7 cut(s)	30, 144, 177, 573, 654, 930, 981
FspBI	CTAG	2 cut(s)	242, 770
FspI	TGCGCA	1 cut(s)	12
GlaI	GCGC	4 cut(s)	12, 413, 918, 979
GluI	GCNGC	7 cut(s)	30, 144, 177, 573, 654, 930, 981
GsuI	CTGGAG	3 cut(s)	135, 897, 977
HaeII	RGCGCY	3 cut(s)	415, 920, 981
HapII	CCGG	2 cut(s)	168, 933
HhaI	GCGC	4 cut(s)	13, 414, 919, 980
Hin1II	CATG	7 cut(s)	208, 370, 400, 406, 457, 580, 1003
Hin6I	GCGC	4 cut(s)	11, 412, 917, 978
HinP1I	GCGC	4 cut(s)	11, 412, 917, 978
HinfI	GANTC	5 cut(s)	119, 385, 713, 800, 1012
HpaII	CCGG	2 cut(s)	168, 933
HphI	GGTGA	4 cut(s)	47, 755, 854, 859
Hpy188I	TCNGA	4 cut(s)	76, 103, 297, 805
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	6 cut(s)	276, 537, 800, 804, 940, 1063
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	3 cut(s)	502, 511, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 662, 779, 1060
HpyF3I	CTNAG	3 cut(s)	96, 336, 408
HpySE526I	ACGT	3 cut(s)	502, 511, 1023
Hsp92II	CATG	7 cut(s)	208, 370, 400, 406, 457, 580, 1003
HspAI	GCGC	4 cut(s)	11, 412, 917, 978
Kzo9I	GATC	5 cut(s)	223, 262, 436, 487, 523
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	3 cut(s)	71, 184, 878
Lsp1109I	GCAGC	5 cut(s)	163, 559, 665, 941, 967
LweI	GCATC	5 cut(s)	420, 640, 685, 880, 1063
MaeI	CTAG	2 cut(s)	242, 770
MaeII	ACGT	3 cut(s)	502, 511, 1023
MaeIII	GTNAC	2 cut(s)	507, 985
MalI	GATC	5 cut(s)	225, 264, 438, 489, 525
MboI	GATC	5 cut(s)	223, 262, 436, 487, 523
MboII	GAAGA	7 cut(s)	509, 533, 560, 695, 704, 809, 953
MfeI	CAATTG	2 cut(s)	318, 717
MflI	RGATCY	3 cut(s)	262, 436, 523
MhlI	GDGCHC	2 cut(s)	769, 859
MluCI	AATT	4 cut(s)	318, 392, 670, 717
MlyI	GAGTC	1 cut(s)	1006
MmeI	TCCRAC	2 cut(s)	178, 500
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	168, 933
MspR9I	CCNGG	1 cut(s)	645
MunI	CAATTG	2 cut(s)	318, 717
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	4 cut(s)	173, 662, 779, 1060
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	5 cut(s)	223, 262, 436, 487, 523
NlaIII	CATG	7 cut(s)	208, 370, 400, 406, 457, 580, 1003
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	2 cut(s)	507, 985
NsbI	TGCGCA	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	427
PaeR7I	CTCGAG	2 cut(s)	458, 1064
PagI	TCATGA	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	966
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PfeI	GAWTC	4 cut(s)	119, 385, 713, 800
PflMI	CCANNNNNTGG	1 cut(s)	1000
PfoI	TCCNGGA	1 cut(s)	643
PkrI	GCNGC	7 cut(s)	31, 145, 178, 574, 655, 931, 982
PleI	GAGTC	1 cut(s)	1006
PpsI	GAGTC	1 cut(s)	1006
Ppu21I	YACGTR	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	2 cut(s)	566, 677
PsuI	RGATCY	3 cut(s)	262, 436, 523
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	864
RsaNI	GTAC	1 cut(s)	863
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	7 cut(s)	30, 144, 177, 573, 654, 930, 981
Sau3AI	GATC	5 cut(s)	223, 262, 436, 487, 523
Sau96I	GGNCC	2 cut(s)	566, 677
ScaI	AGTACT	1 cut(s)	864
SchI	GAGTC	1 cut(s)	1006
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	769, 859
SfaNI	GCATC	5 cut(s)	420, 640, 685, 880, 1063
Sfr274I	CTCGAG	2 cut(s)	458, 1064
SinI	GGWCC	2 cut(s)	566, 677
SlaI	CTCGAG	2 cut(s)	458, 1064
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	4 cut(s)	458, 858, 869, 1064
SmoI	CTYRAG	4 cut(s)	458, 858, 869, 1064
Sse9I	AATT	4 cut(s)	318, 392, 670, 717
SsiI	CCGC	2 cut(s)	29, 144
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	2 cut(s)	242, 770
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	3 cut(s)	505, 514, 1026
TaqI	TCGA	3 cut(s)	459, 1020, 1065
TasI	AATT	4 cut(s)	318, 392, 670, 717
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	2 cut(s)	32, 146
TfiI	GAWTC	4 cut(s)	119, 385, 713, 800
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	736, 825
TseFI	GTSAC	2 cut(s)	507, 985
TseI	GCWGC	5 cut(s)	176, 572, 653, 929, 980
Tsp45I	GTSAC	2 cut(s)	507, 985
TspDTI	ATGAA	6 cut(s)	258, 385, 461, 713, 726, 911
TspRI	CASTG	2 cut(s)	736, 825
Van91I	CCANNNNNTGG	1 cut(s)	1000
VpaK11BI	GGWCC	2 cut(s)	566, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XhoI	CTCGAG	2 cut(s)	458, 1064
XspI	CTAG	2 cut(s)	242, 770
ZrmI	AGTACT	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.