Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Forward (+)

24074487 .. 24077587

Gene Structure 3101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTTCCGCGCAGAAGGATTCGCCTGCTGATGCAAAGACAGTTCCCAAAGAGGAGAAAACTTCCAAATCTGAAACATCTTCTGGGGAGTCACAGGCACCACAAGCAGCACCAGGAGGCTTCCCGTTTCCAGCAGGAGCAGGAGGGATGCCTTTTCCATTCCCTGAAGCTGGAGGTGCTGGTCCCAATCCTTTTGATTTCTCTGCCATGACCGGCTTGCTTAATGATCCAAGTATCAAGGAACTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCAGAGCAACTTCAGAAAACTTTTCAAGGTGCACCAGTTGATGAAGGTGTCCCTCAGTTTGATAGTCAACAGTACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTATGACCATGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCCATCCATGAATACAATGCTTGAGAGTTTCACAAATCCATCAAACAAAGATCAGCTGGAGGAGCGTATGGCACGCATCAAAGATGATCCTTCTTTGAAGCCTATTTTAGAAGAGATAGAGACTGGGGGTCCTGCTGCCATGATGAGATACTGGAATGATAAAGACGTGTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGGCTGATGGAGCCCCTTCTGAAGTTTCAGGAGAAAAGCCCTGGTCACCAGAGGAAGCAGAAGATGCTGGAGCTGAGGATGAACCCATTGTTCATCACACTGCCAGTGTTGGTGATGTGGAGGGTTTGAAAAATGCGCTTGCTGCTGGTGCTGACAAAGATGAGGAAGATTCCGAAGGAAGGACAGCATTGCATTTTGCTTGCGGATATGGCGAGGCGAAGTGTGCTCAGGTGCTTCTAGAGGCTGGAGCAAAAGTGGATGCCTTGGATAAGAATAAAAACACTGCGCTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGTGTGGCCCTTCTATTGGAAAATGGCGCAGCTGTCACACTCGCAAACATGGATGGAAAGACCCCGATTGACGTTGCCAAGCTGAACAACCAAAACGAGTTGGGAAGCAATCCTGCTTGGATCAGCTTGAGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

368

Amino Acids

39.05

Weight (kDa)

4.46

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	168 - 212	1.1e-08	STI1/HOP, DP domain
Ank_KRIT1	PF24521	245 - 355	8.5e-06	KRIT1 ankyrin-repeats domain
Ank_2	PF12796	247 - 336	8.4e-19	Ankyrin repeats (3 copies)
Ank	PF00023	275 - 306	1.9e-06	Ankyrin repeat
Ank_4	PF13637	289 - 328	1.1e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	294 - 348	4e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	305 - 353	2e-07	Ankyrin repeats (3 copies)
Ank	PF00023	307 - 338	2.3e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 849
AclWI	GGATC	6 cut(s)	221, 260, 434, 447, 521, 1094
AcuI	CTGAAG	3 cut(s)	186, 281, 687
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	170, 825, 982
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	4 cut(s)	277, 311, 538, 775
AhdI	GACNNNNNGTC	1 cut(s)	567
AjiI	CACGTC	1 cut(s)	607
AjnI	CCWGG	2 cut(s)	112, 686
AluBI	AGCT	7 cut(s)	170, 248, 496, 719, 998, 1048, 1092
AluI	AGCT	7 cut(s)	170, 248, 496, 719, 998, 1048, 1092
Alw21I	GWGCWC	2 cut(s)	319, 874
Alw26I	GTCTC	1 cut(s)	554
Alw44I	GTGCAC	1 cut(s)	315
AlwI	GGATC	6 cut(s)	221, 260, 434, 447, 521, 1094
AoxI	GGCC	1 cut(s)	972
ApaLI	GTGCAC	1 cut(s)	315
ApeKI	GCWGC	5 cut(s)	107, 575, 788, 944, 995
AspLEI	GCGC	5 cut(s)	13, 417, 784, 934, 995
AspS9I	GGNCC	3 cut(s)	182, 569, 973
AsuHPI	GGTGA	2 cut(s)	684, 770
AvaII	GGWCC	2 cut(s)	182, 569
BaeGI	GKGCMC	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	661
Bbv12I	GWGCWC	2 cut(s)	319, 874
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	5 cut(s)	119, 562, 775, 956, 1007
BccI	CCATC	5 cut(s)	277, 451, 487, 647, 1013
BciT130I	CCWGG	2 cut(s)	114, 688
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	245, 884
BfoI	RGCGCY	1 cut(s)	418
BisI	GCNGC	5 cut(s)	108, 576, 789, 945, 996
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	5 cut(s)	109, 577, 790, 946, 997
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	114, 688
Bme18I	GGWCC	2 cut(s)	182, 569
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	3 cut(s)	182, 569, 973
BmiI	GGNNCC	5 cut(s)	99, 184, 441, 570, 658
BmrFI	CCNGG	2 cut(s)	114, 688
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	6 cut(s)	22, 138, 423, 525, 700, 895
BmuI	ACTGGG	1 cut(s)	573
BpmI	CTGGAG	4 cut(s)	192, 518, 735, 912
Bpu10I	CCTNAGC	2 cut(s)	720, 873
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	405, 418, 686, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	885, 915
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 825, 982
Bse118I	RCCGGY	2 cut(s)	212, 947
Bse1I	ACTGG	4 cut(s)	320, 568, 596, 750
Bse3DI	GCAATG	2 cut(s)	636, 833
BseBI	CCWGG	2 cut(s)	114, 688
BseDI	CCNNGG	4 cut(s)	405, 418, 686, 909
BseGI	GGATG	6 cut(s)	153, 443, 730, 910, 1024, 1104
BseLI	CCNNNNNNNGG	3 cut(s)	170, 825, 982
BseMI	GCAATG	2 cut(s)	636, 833
BseMII	CTCAG	5 cut(s)	353, 402, 407, 711, 887
BseNI	ACTGG	4 cut(s)	320, 568, 596, 750
BseRI	GAGGAG	2 cut(s)	68, 515
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	5 cut(s)	119, 562, 775, 956, 1007
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	974
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	319, 874
BsiSI	CCGG	2 cut(s)	213, 948
BslFI	GGGAC	2 cut(s)	168, 320
BslI	CCNNNNNNNGG	3 cut(s)	170, 825, 982
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	168, 320
BsnI	GGCC	1 cut(s)	974
Bsp1286I	GDGCHC	3 cut(s)	319, 661, 874
Bsp143I	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	405
BspACI	CCGC	2 cut(s)	9, 849
BspANI	GGCC	1 cut(s)	974
BspCNI	CTCAG	5 cut(s)	352, 403, 406, 712, 886
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	5 cut(s)	99, 184, 441, 570, 658
BspPI	GGATC	6 cut(s)	221, 260, 434, 447, 521, 1094
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	636, 833
BsrFI	RCCGGY	2 cut(s)	212, 947
BsrI	ACTGG	4 cut(s)	320, 568, 596, 750
BssAI	RCCGGY	2 cut(s)	212, 947
BssECI	CCNNGG	4 cut(s)	405, 418, 686, 909
BssMI	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
BssT1I	CCWWGG	2 cut(s)	405, 909
Bst2UI	CCWGG	2 cut(s)	114, 688
Bst4CI	ACNGT	2 cut(s)	43, 357
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstC8I	GCNNGC	5 cut(s)	27, 218, 514, 786, 847
BstDEI	CTNAG	5 cut(s)	339, 393, 411, 720, 873
BstDSI	CCRYGG	1 cut(s)	405
BstEII	GGTNACC	1 cut(s)	690
BstF5I	GGATG	6 cut(s)	153, 443, 730, 910, 1024, 1104
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	5 cut(s)	13, 417, 784, 934, 995
BstKTI	GATC	6 cut(s)	229, 268, 442, 493, 529, 1089
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
BstNI	CCWGG	2 cut(s)	114, 688
BstPI	GGTNACC	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	112, 686
BstSLI	GKGCMC	1 cut(s)	319
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	5 cut(s)	119, 562, 775, 956, 1007
BstX2I	RGATCY	2 cut(s)	265, 439
BstYI	RGATCY	2 cut(s)	265, 439
BsuRI	GGCC	1 cut(s)	974
BtgI	CCRYGG	1 cut(s)	405
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	6 cut(s)	153, 443, 730, 910, 1024, 1104
BtsI	GCAGTG	2 cut(s)	744, 927
BtsIMutI	CAGTG	3 cut(s)	744, 757, 927
Cac8I	GCNNGC	5 cut(s)	27, 218, 514, 786, 847
CfoI	GCGC	5 cut(s)	13, 417, 784, 934, 995
Cfr10I	RCCGGY	2 cut(s)	212, 947
Cfr13I	GGNCC	3 cut(s)	182, 569, 973
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	6 cut(s)	208, 370, 406, 448, 580, 1015
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	5 cut(s)	339, 393, 411, 720, 873
DpnI	GATC	6 cut(s)	228, 267, 441, 492, 528, 1088
DpnII	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
DriI	GACNNNNNGTC	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	546
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	405, 909
Eco24I	GRGCYC	1 cut(s)	661
Eco47I	GGWCC	2 cut(s)	182, 569
Eco57I	CTGAAG	3 cut(s)	186, 281, 687
Eco91I	GGTNACC	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	569
EcoO65I	GGTNACC	1 cut(s)	690
EcoRII	CCWGG	2 cut(s)	112, 686
EcoT14I	CCWWGG	2 cut(s)	405, 909
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	661
ErhI	CCWWGG	2 cut(s)	405, 909
FaeI	CATG	6 cut(s)	211, 373, 409, 451, 583, 1018
FaqI	GGGAC	2 cut(s)	168, 320
FatI	CATG	6 cut(s)	207, 369, 405, 447, 579, 1014
Fnu4HI	GCNGC	5 cut(s)	108, 576, 789, 945, 996
FokI	GGATG	5 cut(s)	160, 430, 737, 917, 1031
FriOI	GRGCYC	1 cut(s)	661
Fsp4HI	GCNGC	5 cut(s)	108, 576, 789, 945, 996
FspBI	CTAG	2 cut(s)	245, 884
GlaI	GCGC	5 cut(s)	12, 416, 783, 933, 994
GluI	GCNGC	5 cut(s)	108, 576, 789, 945, 996
GsuI	CTGGAG	4 cut(s)	192, 518, 735, 912
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	974
HapII	CCGG	2 cut(s)	213, 948
HhaI	GCGC	5 cut(s)	13, 417, 784, 934, 995
Hin1II	CATG	6 cut(s)	211, 373, 409, 451, 583, 1018
Hin6I	GCGC	5 cut(s)	11, 415, 782, 932, 993
HinP1I	GCGC	5 cut(s)	11, 415, 782, 932, 993
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	4 cut(s)	20, 89, 388, 815
HpaII	CCGG	2 cut(s)	213, 948
HphI	GGTGA	2 cut(s)	684, 770
Hpy166II	GTNNAC	2 cut(s)	317, 353
Hpy188I	TCNGA	4 cut(s)	73, 300, 667, 820
Hpy188III	TCNNGA	2 cut(s)	675, 884
Hpy8I	GTNNAC	2 cut(s)	317, 353
HpyAV	CCTTC	9 cut(s)	10, 279, 323, 540, 672, 815, 819, 955, 986
HpyCH4III	ACNGT	2 cut(s)	43, 357
HpyCH4IV	ACGT	2 cut(s)	606, 1038
HpyF3I	CTNAG	5 cut(s)	339, 393, 411, 720, 873
HpySE526I	ACGT	2 cut(s)	606, 1038
Hsp92II	CATG	6 cut(s)	211, 373, 409, 451, 583, 1018
HspAI	GCGC	5 cut(s)	11, 415, 782, 932, 993
Kzo9I	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
LmnI	GCTCC	5 cut(s)	137, 502, 656, 716, 893
Lsp1109I	GCAGC	5 cut(s)	119, 562, 775, 956, 1007
LweI	GCATC	6 cut(s)	22, 138, 423, 525, 700, 895
MaeI	CTAG	2 cut(s)	245, 884
MaeII	ACGT	2 cut(s)	606, 1038
MaeIII	GTNAC	3 cut(s)	90, 690, 1000
MalI	GATC	6 cut(s)	228, 267, 441, 492, 528, 1088
MboI	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
MboII	GAAGA	4 cut(s)	72, 563, 719, 824
MflI	RGATCY	2 cut(s)	265, 439
MhlI	GDGCHC	3 cut(s)	319, 661, 874
MlyI	GAGTC	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	496, 998
MspI	CCGG	2 cut(s)	213, 948
MspR9I	CCNGG	2 cut(s)	114, 688
MvaI	CCWGG	2 cut(s)	114, 688
MvnI	CGCG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
NlaIII	CATG	6 cut(s)	211, 373, 409, 451, 583, 1018
NlaIV	GGNNCC	5 cut(s)	99, 184, 441, 570, 658
NmuCI	GTSAC	3 cut(s)	90, 690, 1000
NsiI	ATGCAT	1 cut(s)	430
PfeI	GAWTC	3 cut(s)	20, 388, 815
PkrI	GCNGC	5 cut(s)	109, 577, 790, 946, 997
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	112, 686
PspEI	GGTNACC	1 cut(s)	690
PspGI	CCWGG	2 cut(s)	112, 686
PspN4I	GGNNCC	5 cut(s)	99, 184, 441, 570, 658
PspPI	GGNCC	3 cut(s)	182, 569, 973
PspPPI	RGGWCCY	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	265, 439
PvuII	CAGCTG	2 cut(s)	496, 998
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	5 cut(s)	108, 576, 789, 945, 996
Sau3AI	GATC	6 cut(s)	226, 265, 439, 490, 526, 1086
Sau96I	GGNCC	3 cut(s)	182, 569, 973
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	114, 688
SduI	GDGCHC	3 cut(s)	319, 661, 874
SfaNI	GCATC	6 cut(s)	22, 138, 423, 525, 700, 895
SinI	GGWCC	2 cut(s)	182, 569
SmlI	CTYRAG	2 cut(s)	461, 1093
SmoI	CTYRAG	2 cut(s)	461, 1093
SsiI	CCGC	2 cut(s)	9, 849
SspMI	CTAG	2 cut(s)	245, 884
StyD4I	CCNGG	2 cut(s)	112, 686
StyI	CCWWGG	2 cut(s)	405, 909
TaaI	ACNGT	2 cut(s)	43, 357
TaiI	ACGT	2 cut(s)	609, 1041
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	20, 388, 815
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	751, 757, 934
TseFI	GTSAC	3 cut(s)	90, 690, 1000
TseI	GCWGC	5 cut(s)	107, 575, 788, 944, 995
Tsp45I	GTSAC	3 cut(s)	90, 690, 1000
TspDTI	ATGAA	6 cut(s)	261, 342, 464, 728, 741, 926
TspRI	CASTG	3 cut(s)	751, 757, 934
VneI	GTGCAC	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	182, 569
XbaI	TCTAGA	1 cut(s)	883
XspI	CTAG	2 cut(s)	245, 884
ZrmI	AGTACT	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.