Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Forward (+)

16839526 .. 16842173

Gene Structure 2648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTTCCAATTCGGAGAAAAATCCTCTTCTTTCAGATGAGAAACCCAAATCGACGGAGGAGAATAAGAGTTCTAAGCCGGAATCAGCTTCTGGGAGTTCAACTTCATCAGCTATGCCTGGCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTAACCAATTGGCTGAGCAGCTTCAGAGATCTATTCCTAACGCTGGCCAGGAAGGTGGTTTCCCTAACTTTGATCCTCAACAGTATGTCAATACAATGCAACAGGTTATGCATAACCCTGAGTTTAAGACAATGGCCGAGAAACTTGGTACCGCCTTAGTTCAGGATCCACAAATGTCTCCTTTTTTGGATGCTTTCTCGAATCCTGAAACAGCAGAACACTTTACTGAGCGTATGGCGCGGATGAAAGAAGATCCAGAGTTGAAACCTATACTAGATGAGATTGATGCTGGTGGTCCTTCTGCCATGATGAAGTACTGGAATGATCCAGAAGTGCTGAAAAAGCTGGGTGAAGCAATGGGTATGCCTGTTGCTGGCTTACCAGACCAGACTGTTTCAGCTGAACCTGAGGTAGCAGAAGAAGGTGAAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCTGAAGGAAGGACAGCATTGCATTTTGCTTGTGGATACGGCGAGTTGAAATGTGCTCAAGTTCTTATCGATGCTGGAGCAAGTGTTAATGCGGTTGACAAAAACAAGAACACACCTCTGCATTATGCTGCTGGTTACGGGAGGAAAGAGTGTGTAAGCCTTCTCCTGGAGAATGGTGCTGCAGTCACTCTGCAAAACCTAGACGAGAAGACGCCAATTGATGTAGCGAAGCTCAACAGCCAGCTGGAGGTGGTGAAGCTGCTTGAGAAGGATGCTTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

342

Amino Acids

36.98

Weight (kDa)

4.49

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	151 - 194	1.1e-09	STI1/HOP, DP domain
Ank_2	PF12796	214 - 281	1e-08	Ankyrin repeats (3 copies)
Ank_KRIT1	PF24521	220 - 329	9e-06	KRIT1 ankyrin-repeats domain
Ank_2	PF12796	223 - 313	1.2e-19	Ankyrin repeats (3 copies)
Ank	PF00023	251 - 282	1.4e-07	Ankyrin repeat
Ank_4	PF13637	255 - 304	3e-12	Ankyrin repeats (many copies)
Ank_5	PF13857	270 - 324	7.4e-10	Ankyrin repeats (many copies)
Ank_2	PF12796	275 - 336	8.8e-11	Ankyrin repeats (3 copies)
Ank	PF00023	283 - 314	1.5e-07	Ankyrin repeat
Ank_4	PF13637	288 - 336	2.8e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	1 cut(s)	460
AciI	CCGC	3 cut(s)	372, 460, 836
AclWI	GGATC	7 cut(s)	167, 206, 287, 380, 393, 467, 539
AcoI	YGGCCR	2 cut(s)	265, 354
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	227, 768
AcyI	GRCGYC	1 cut(s)	956
AfaI	GTAC	2 cut(s)	370, 536
AfiI	CCNNNNNNNGG	4 cut(s)	263, 593, 910, 991
AgsI	TTSAA	6 cut(s)	102, 127, 133, 484, 703, 793
AjnI	CCWGG	3 cut(s)	118, 267, 909
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
Alw21I	GWGCWC	1 cut(s)	802
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	7 cut(s)	167, 206, 287, 380, 393, 467, 539
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	265, 354
ApeKI	GCWGC	5 cut(s)	238, 707, 872, 923, 1003
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
Asp718I	GGTACC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	5 cut(s)	581, 656, 659, 698, 1009
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	959
Bbv12I	GWGCWC	1 cut(s)	802
BbvI	GCAGC	5 cut(s)	250, 694, 859, 910, 990
BceAI	ACGGC	1 cut(s)	799
BciT130I	CCWGG	3 cut(s)	120, 269, 911
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	4 cut(s)	159, 177, 494, 944
BfmI	CTRYAG	1 cut(s)	924
BfuI	GTATCC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	5 cut(s)	239, 708, 873, 924, 1004
BlpI	GCTNAGC	2 cut(s)	195, 234
BlsI	GCNGC	5 cut(s)	240, 709, 874, 925, 1005
BmcAI	AGTACT	1 cut(s)	536
Bme1390I	CCNGG	3 cut(s)	120, 269, 911
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	370, 387
BmrFI	CCNGG	3 cut(s)	120, 269, 911
BmsI	GCATC	6 cut(s)	189, 400, 496, 725, 805, 1006
BpiI	GAAGAC	1 cut(s)	959
BpmI	CTGGAG	3 cut(s)	840, 932, 1010
Bpu1102I	GCTNAGC	2 cut(s)	195, 234
BpuEI	CTTGAG	2 cut(s)	786, 1028
Bsa29I	ATCGAT	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	711
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 593, 910, 991
Bse1I	ACTGG	2 cut(s)	542, 678
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	2 cut(s)	582, 761
BseBI	CCWGG	3 cut(s)	120, 269, 911
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	1 cut(s)	711
BseGI	GGATG	3 cut(s)	415, 468, 1021
BseLI	CCNNNNNNNGG	4 cut(s)	263, 593, 910, 991
BseMI	GCAATG	2 cut(s)	582, 761
BseMII	CTCAG	5 cut(s)	186, 225, 330, 438, 618
BseNI	ACTGG	2 cut(s)	542, 678
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	5 cut(s)	250, 694, 859, 910, 990
BseYI	CCCAGC	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	2 cut(s)	267, 356
BshNI	GGYRCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	263, 593, 910, 991
BsmAI	GTCTC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	267, 356
Bsp1286I	GDGCHC	1 cut(s)	802
Bsp143I	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
Bsp1720I	GCTNAGC	2 cut(s)	195, 234
BspACI	CCGC	3 cut(s)	372, 460, 836
BspANI	GGCC	2 cut(s)	267, 356
BspCNI	CTCAG	5 cut(s)	187, 226, 331, 439, 619
BspDI	ATCGAT	1 cut(s)	813
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	370, 387
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	7 cut(s)	167, 206, 287, 380, 393, 467, 539
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	582, 761
BsrI	ACTGG	2 cut(s)	542, 678
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
BssNI	GRCGYC	1 cut(s)	956
BssT1I	CCWWGG	1 cut(s)	711
Bst2UI	CCWGG	3 cut(s)	120, 269, 911
Bst4CI	ACNGT	2 cut(s)	303, 613
Bst6I	CTCTTC	2 cut(s)	33, 648
BstACI	GRCGYC	1 cut(s)	956
BstC8I	GCNNGC	3 cut(s)	265, 595, 986
BstDEI	CTNAG	7 cut(s)	75, 195, 234, 339, 376, 447, 627
BstF5I	GGATG	3 cut(s)	415, 468, 1021
BstFNI	CGCG	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	7 cut(s)	175, 214, 251, 295, 388, 475, 547
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	457, 562, 713
BstNI	CCWGG	3 cut(s)	120, 269, 911
BstSCI	CCNGG	3 cut(s)	118, 267, 909
BstSFI	CTRYAG	1 cut(s)	924
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	5 cut(s)	250, 694, 859, 910, 990
BstV2I	GAAGAC	1 cut(s)	959
BstX2I	RGATCY	4 cut(s)	211, 248, 385, 472
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	4 cut(s)	211, 248, 385, 472
Bsu15I	ATCGAT	1 cut(s)	813
Bsu36I	CCTNAGG	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	267, 356
BsuTUI	ATCGAT	1 cut(s)	813
BtsCI	GGATG	3 cut(s)	415, 468, 1021
Cac8I	GCNNGC	3 cut(s)	265, 595, 986
CaiI	CAGNNNCTG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	515
ClaI	ATCGAT	1 cut(s)	813
CseI	GACGC	1 cut(s)	964
Csp6I	GTAC	2 cut(s)	369, 535
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	2 cut(s)	369, 535
DdeI	CTNAG	7 cut(s)	75, 195, 234, 339, 376, 447, 627
DpnI	GATC	7 cut(s)	174, 213, 250, 294, 387, 474, 546
DpnII	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
EaeI	YGGCCR	2 cut(s)	265, 354
Eam1104I	CTCTTC	2 cut(s)	33, 648
EarI	CTCTTC	2 cut(s)	33, 648
Eco130I	CCWWGG	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	227, 768
Eco81I	CCTNAGG	1 cut(s)	627
EcoRII	CCWGG	3 cut(s)	118, 267, 909
EcoT14I	CCWWGG	1 cut(s)	711
EcoT22I	ATGCAT	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	1 cut(s)	529
FatI	CATG	1 cut(s)	525
Fnu4HI	GCNGC	5 cut(s)	239, 708, 873, 924, 1004
FokI	GGATG	2 cut(s)	422, 475
Fsp4HI	GCNGC	5 cut(s)	239, 708, 873, 924, 1004
FspBI	CTAG	4 cut(s)	159, 177, 494, 944
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	5 cut(s)	239, 708, 873, 924, 1004
GsaI	CCCAGC	1 cut(s)	569
GsuI	CTGGAG	3 cut(s)	840, 932, 1010
HaeIII	GGCC	2 cut(s)	267, 356
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	964
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	956
Hin1II	CATG	1 cut(s)	529
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	4 cut(s)	83, 421, 656, 743
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	5 cut(s)	581, 656, 659, 698, 1009
Hpy166II	GTNNAC	2 cut(s)	667, 841
Hpy188I	TCNGA	5 cut(s)	16, 37, 185, 246, 748
Hpy188III	TCNNGA	5 cut(s)	383, 418, 425, 476, 548
Hpy8I	GTNNAC	2 cut(s)	667, 841
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	7 cut(s)	266, 528, 635, 743, 747, 914, 1006
HpyCH4III	ACNGT	2 cut(s)	303, 613
HpyCH4V	TGCA	6 cut(s)	319, 331, 766, 865, 926, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	457, 562, 713
HpyF3I	CTNAG	7 cut(s)	75, 195, 234, 339, 376, 447, 627
Hsp92I	GRCGYC	1 cut(s)	956
Hsp92II	CATG	1 cut(s)	529
HspAI	GCGC	1 cut(s)	458
KpnI	GGTACC	1 cut(s)	372
Kzo9I	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	5 cut(s)	250, 694, 859, 910, 990
LweI	GCATC	6 cut(s)	189, 400, 496, 725, 805, 1006
MaeI	CTAG	4 cut(s)	159, 177, 494, 944
MaeIII	GTNAC	3 cut(s)	725, 878, 928
MalI	GATC	7 cut(s)	174, 213, 250, 294, 387, 474, 546
MboI	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
MboII	GAAGA	9 cut(s)	20, 482, 650, 659, 662, 665, 749, 752, 964
MfeI	CAATTG	2 cut(s)	227, 960
MflI	RGATCY	4 cut(s)	211, 248, 385, 472
MhlI	GDGCHC	1 cut(s)	802
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	4 cut(s)	10, 127, 227, 960
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	8 cut(s)	36, 52, 306, 622, 688, 870, 879, 985
Mox20I	TGGCCA	1 cut(s)	267
Mph1103I	ATGCAT	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	3 cut(s)	222, 345, 831
Msp20I	TGGCCA	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	620, 988
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	120, 269, 911
MunI	CAATTG	2 cut(s)	227, 960
MvaI	CCWGG	3 cut(s)	120, 269, 911
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	3 cut(s)	457, 562, 713
NdeII	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	2 cut(s)	370, 387
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	928
NsiI	ATGCAT	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	83, 421, 743
PfoI	TCCNGGA	1 cut(s)	909
PkrI	GCNGC	5 cut(s)	240, 709, 874, 925, 1005
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	118, 267, 909
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	3 cut(s)	118, 267, 909
PspN4I	GGNNCC	2 cut(s)	370, 387
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	4 cut(s)	211, 248, 385, 472
PvuII	CAGCTG	2 cut(s)	620, 988
RsaI	GTAC	2 cut(s)	370, 536
RsaNI	GTAC	2 cut(s)	369, 535
SaqAI	TTAA	3 cut(s)	222, 345, 831
SatI	GCNGC	5 cut(s)	239, 708, 873, 924, 1004
Sau3AI	GATC	7 cut(s)	172, 211, 248, 292, 385, 472, 544
Sau96I	GGNCC	1 cut(s)	515
ScaI	AGTACT	1 cut(s)	536
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	3 cut(s)	120, 269, 911
SduI	GDGCHC	1 cut(s)	802
SfaNI	GCATC	6 cut(s)	189, 400, 496, 725, 805, 1006
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	801, 1007
SmoI	CTYRAG	2 cut(s)	801, 1007
Sse9I	AATT	4 cut(s)	10, 127, 227, 960
SsiI	CCGC	3 cut(s)	372, 460, 836
SspMI	CTAG	4 cut(s)	159, 177, 494, 944
StyD4I	CCNGG	3 cut(s)	118, 267, 909
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	2 cut(s)	303, 613
TaqI	TCGA	3 cut(s)	53, 419, 813
TasI	AATT	4 cut(s)	10, 127, 227, 960
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	83, 421, 743
Tru1I	TTAA	3 cut(s)	222, 345, 831
Tru9I	TTAA	3 cut(s)	222, 345, 831
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	5 cut(s)	238, 707, 872, 923, 1003
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	4 cut(s)	96, 479, 545, 750
TspGWI	ACGGA	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	4 cut(s)	159, 177, 494, 944
ZrmI	AGTACT	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.