Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

44676899 .. 44681313

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG256300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCCTTTTCCATTCCCTGAAGCTGGAGGTGCAGGTCCCAATCCTTTTGATTTCTCTGCCATGACCGGCTTGCTTAATGATCCAAGTATCAAGGAACTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCAGAGCAACTTCAGAAAACTTTTCAAGGTGCACCAGTTGACGAAGGTGTCCCTCAGTTTGATAGTCAACAGTACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTATGACCATGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCCATCCATGAATACAATGCTTGAGAGTATCGCAAATCCATCAAACAAAGATCAGCTGGAGGAGCGTATGGCACGCATCAAAGATGATCCTTCTTTGAAGCCTATTTTAGAAGAGATAGAGACTGGGGGTCCTGCTGCCATGATGAGATACTGGAATGATAAAGACGTGTTGCAGAAGTTGGGAGAAGCAATGGGTCTTCCAGTTGGGACTGATGGATCCCCTTCTGAAGTTTCAGGAGAAAAGCCCTGGTCACCAGAGGAAGCAGAAGATGCTGGAGCTGAGGATGAACCCATTGTTCATCACACTGCCAGTGTTGGTGATGTGGAGGGTTTGAAAAATGCGCTTTCTACTGGTGCTGACAAAGATGAGGAAGATTCCGAAGGAAGGACAGCATTGCATTTTGCTTGCGGATATGGCGAGGCGAAGTGTGCTCAGGTGCTTCTAGAGGCTGGAGCAAAAGTGGATGCCTTAGATAAGAATAAAAACACTGCGCTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGTGTGGCCCTTCTATTGGAAAATGGCGCAGCTGTCACACTCGCAAACATGGATGGAAAGACCCCGATTGACGTTGCCAAGCTGAACAACCAAAATGATGTACTTAAGTTGCTCGAGAAGGATGCCTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

317

Amino Acids

34.25

Weight (kDa)

4.39

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	120 - 163	9.4e-09	STI1/HOP, DP domain
Ank_KRIT1	PF24521	196 - 306	4.9e-06	KRIT1 ankyrin-repeats domain
Ank_2	PF12796	198 - 287	9e-19	Ankyrin repeats (3 copies)
Ank	PF00023	226 - 257	1.6e-06	Ankyrin repeat
Ank_4	PF13637	240 - 279	8.9e-08	Ankyrin repeats (many copies)
Ank_5	PF13857	245 - 299	3.2e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	253 - 312	3.7e-10	Ankyrin repeats (3 copies)
Ank	PF00023	258 - 289	1.9e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	23
AciI	CCGC	1 cut(s)	702
AclWI	GGATC	7 cut(s)	74, 113, 287, 300, 374, 504, 517
AcuI	CTGAAG	3 cut(s)	39, 134, 540
AfaI	GTAC	2 cut(s)	212, 921
AfiI	CCNNNNNNNGG	3 cut(s)	23, 678, 835
AflII	CTTAAG	1 cut(s)	923
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	4 cut(s)	130, 164, 391, 628
AhdI	GACNNNNNGTC	1 cut(s)	420
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	6 cut(s)	23, 101, 349, 572, 851, 901
AluI	AGCT	6 cut(s)	23, 101, 349, 572, 851, 901
Alw21I	GWGCWC	2 cut(s)	172, 727
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	7 cut(s)	74, 113, 287, 300, 374, 504, 517
Ama87I	CYCGRG	1 cut(s)	932
AoxI	GGCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	428, 797, 848
AspLEI	GCGC	4 cut(s)	270, 637, 787, 848
AspS9I	GGNCC	3 cut(s)	35, 422, 826
AsuHPI	GGTGA	2 cut(s)	537, 623
AvaI	CYCGRG	1 cut(s)	932
AvaII	GGWCC	2 cut(s)	35, 422
BaeGI	GKGCMC	1 cut(s)	172
BamHI	GGATCC	2 cut(s)	292, 509
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	2 cut(s)	172, 727
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	415, 809, 860
BccI	CCATC	5 cut(s)	130, 304, 340, 500, 866
BcgI	CGANNNNNNTGC	1 cut(s)	923
BciT130I	CCWGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	3 cut(s)	98, 737, 952
BfoI	RGCGCY	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	923
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	3 cut(s)	429, 798, 849
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	3 cut(s)	430, 799, 850
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	2 cut(s)	35, 422
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	932
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	3 cut(s)	35, 422, 826
BmiI	GGNNCC	4 cut(s)	37, 294, 423, 511
BmrFI	CCNGG	1 cut(s)	541
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	5 cut(s)	276, 378, 553, 748, 931
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	4 cut(s)	45, 371, 588, 765
Bpu10I	CCTNAGC	2 cut(s)	573, 726
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	3 cut(s)	258, 271, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 678, 835
Bse118I	RCCGGY	2 cut(s)	65, 800
Bse1I	ACTGG	6 cut(s)	173, 421, 449, 494, 603, 649
Bse3DI	GCAATG	2 cut(s)	489, 686
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	258, 271, 539
BseGI	GGATG	5 cut(s)	296, 583, 763, 877, 946
BseLI	CCNNNNNNNGG	3 cut(s)	23, 678, 835
BseMI	GCAATG	2 cut(s)	489, 686
BseMII	CTCAG	5 cut(s)	206, 255, 260, 564, 740
BseNI	ACTGG	6 cut(s)	173, 421, 449, 494, 603, 649
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	415, 809, 860
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	2 cut(s)	172, 727
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	2 cut(s)	66, 801
BslFI	GGGAC	3 cut(s)	21, 173, 514
BslI	CCNNNNNNNGG	3 cut(s)	23, 678, 835
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	3 cut(s)	21, 173, 514
BsnI	GGCC	1 cut(s)	827
BsoBI	CYCGRG	1 cut(s)	932
Bsp1286I	GDGCHC	2 cut(s)	172, 727
Bsp143I	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	702
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	5 cut(s)	205, 256, 259, 565, 739
BspLI	GGNNCC	4 cut(s)	37, 294, 423, 511
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	7 cut(s)	74, 113, 287, 300, 374, 504, 517
BspTI	CTTAAG	1 cut(s)	923
BsrDI	GCAATG	2 cut(s)	489, 686
BsrFI	RCCGGY	2 cut(s)	65, 800
BsrI	ACTGG	6 cut(s)	173, 421, 449, 494, 603, 649
BssAI	RCCGGY	2 cut(s)	65, 800
BssECI	CCNNGG	3 cut(s)	258, 271, 539
BssMI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	923
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	71, 367, 700
BstDEI	CTNAG	6 cut(s)	192, 246, 264, 573, 726, 763
BstDSI	CCRYGG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	543
BstF5I	GGATG	5 cut(s)	296, 583, 763, 877, 946
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	4 cut(s)	270, 637, 787, 848
BstKTI	GATC	6 cut(s)	82, 121, 295, 346, 382, 512
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 355, 563, 708, 722
BstNI	CCWGG	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	415, 809, 860
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	3 cut(s)	118, 292, 509
BstYI	RGATCY	3 cut(s)	118, 292, 509
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	5 cut(s)	296, 583, 763, 877, 946
BtsI	GCAGTG	2 cut(s)	597, 780
BtsIMutI	CAGTG	3 cut(s)	597, 610, 780
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	3 cut(s)	71, 367, 700
CfoI	GCGC	4 cut(s)	270, 637, 787, 848
Cfr10I	RCCGGY	2 cut(s)	65, 800
Cfr13I	GGNCC	3 cut(s)	35, 422, 826
Csp6I	GTAC	2 cut(s)	211, 920
CviAII	CATG	6 cut(s)	61, 223, 259, 301, 433, 868
CviQI	GTAC	2 cut(s)	211, 920
DdeI	CTNAG	6 cut(s)	192, 246, 264, 573, 726, 763
DpnI	GATC	6 cut(s)	81, 120, 294, 345, 381, 511
DpnII	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
DrdI	GACNNNNNNGTC	1 cut(s)	185
DriI	GACNNNNNGTC	1 cut(s)	420
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	35, 422
Eco57I	CTGAAG	3 cut(s)	39, 134, 540
Eco88I	CYCGRG	1 cut(s)	932
Eco91I	GGTNACC	1 cut(s)	543
EcoO109I	RGGNCCY	2 cut(s)	35, 422
EcoO65I	GGTNACC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	6 cut(s)	64, 226, 262, 304, 436, 871
FalI	AAGNNNNNCTT	1 cut(s)	929
FaqI	GGGAC	3 cut(s)	21, 173, 514
FatI	CATG	6 cut(s)	60, 222, 258, 300, 432, 867
Fnu4HI	GCNGC	3 cut(s)	429, 798, 849
FokI	GGATG	4 cut(s)	283, 590, 770, 884
Fsp4HI	GCNGC	3 cut(s)	429, 798, 849
FspBI	CTAG	3 cut(s)	98, 737, 952
GlaI	GCGC	4 cut(s)	269, 636, 786, 847
GluI	GCNGC	3 cut(s)	429, 798, 849
GsuI	CTGGAG	4 cut(s)	45, 371, 588, 765
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	2 cut(s)	66, 801
HhaI	GCGC	4 cut(s)	270, 637, 787, 848
Hin1II	CATG	6 cut(s)	64, 226, 262, 304, 436, 871
Hin6I	GCGC	4 cut(s)	268, 635, 785, 846
HinP1I	GCGC	4 cut(s)	268, 635, 785, 846
HincII	GTYRAC	2 cut(s)	178, 206
HindII	GTYRAC	2 cut(s)	178, 206
HinfI	GANTC	2 cut(s)	241, 668
HpaII	CCGG	2 cut(s)	66, 801
HphI	GGTGA	2 cut(s)	537, 623
Hpy166II	GTNNAC	3 cut(s)	170, 178, 206
Hpy188I	TCNGA	3 cut(s)	153, 520, 673
Hpy188III	TCNNGA	3 cut(s)	528, 737, 934
Hpy8I	GTNNAC	3 cut(s)	170, 178, 206
HpyAV	CCTTC	9 cut(s)	132, 176, 393, 525, 668, 672, 808, 839, 931
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	2 cut(s)	459, 891
HpyCH4V	TGCA	9 cut(s)	32, 170, 226, 238, 281, 289, 466, 691, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 355, 563, 708, 722
HpyF3I	CTNAG	6 cut(s)	192, 246, 264, 573, 726, 763
HpySE526I	ACGT	2 cut(s)	459, 891
Hsp92II	CATG	6 cut(s)	64, 226, 262, 304, 436, 871
HspAI	GCGC	4 cut(s)	268, 635, 785, 846
Kzo9I	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
LmnI	GCTCC	3 cut(s)	355, 569, 746
Lsp1109I	GCAGC	3 cut(s)	415, 809, 860
LweI	GCATC	5 cut(s)	276, 378, 553, 748, 931
MaeI	CTAG	3 cut(s)	98, 737, 952
MaeII	ACGT	2 cut(s)	459, 891
MaeIII	GTNAC	2 cut(s)	543, 853
MalI	GATC	6 cut(s)	81, 120, 294, 345, 381, 511
MboI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
MboII	GAAGA	4 cut(s)	416, 482, 572, 677
MflI	RGATCY	3 cut(s)	118, 292, 509
MhlI	GDGCHC	2 cut(s)	172, 727
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	2 cut(s)	75, 924
MspA1I	CMGCKG	2 cut(s)	349, 851
MspCI	CTTAAG	1 cut(s)	923
MspI	CCGG	2 cut(s)	66, 801
MspR9I	CCNGG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	5 cut(s)	29, 355, 563, 708, 722
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
NlaIII	CATG	6 cut(s)	64, 226, 262, 304, 436, 871
NlaIV	GGNNCC	4 cut(s)	37, 294, 423, 511
NmuCI	GTSAC	2 cut(s)	543, 853
NsiI	ATGCAT	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	932
PfeI	GAWTC	2 cut(s)	241, 668
PkrI	GCNGC	3 cut(s)	430, 799, 850
PpuMI	RGGWCCY	2 cut(s)	35, 422
Psp5II	RGGWCCY	2 cut(s)	35, 422
Psp6I	CCWGG	1 cut(s)	539
PspEI	GGTNACC	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	37, 294, 423, 511
PspPI	GGNCC	3 cut(s)	35, 422, 826
PspPPI	RGGWCCY	2 cut(s)	35, 422
PsuI	RGATCY	3 cut(s)	118, 292, 509
PvuII	CAGCTG	2 cut(s)	349, 851
RsaI	GTAC	2 cut(s)	212, 921
RsaNI	GTAC	2 cut(s)	211, 920
SaqAI	TTAA	2 cut(s)	75, 924
SatI	GCNGC	3 cut(s)	429, 798, 849
Sau3AI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
Sau96I	GGNCC	3 cut(s)	35, 422, 826
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	172, 727
SfaNI	GCATC	5 cut(s)	276, 378, 553, 748, 931
Sfr274I	CTCGAG	1 cut(s)	932
SinI	GGWCC	2 cut(s)	35, 422
SlaI	CTCGAG	1 cut(s)	932
SmlI	CTYRAG	3 cut(s)	314, 923, 932
SmoI	CTYRAG	3 cut(s)	314, 923, 932
SsiI	CCGC	1 cut(s)	702
SspMI	CTAG	3 cut(s)	98, 737, 952
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	2 cut(s)	462, 894
TaqI	TCGA	1 cut(s)	933
TatI	WGTACW	2 cut(s)	210, 919
TfiI	GAWTC	2 cut(s)	241, 668
Tru1I	TTAA	2 cut(s)	75, 924
Tru9I	TTAA	2 cut(s)	75, 924
TscAI	CASTG	3 cut(s)	604, 610, 787
TseFI	GTSAC	2 cut(s)	543, 853
TseI	GCWGC	3 cut(s)	428, 797, 848
Tsp45I	GTSAC	2 cut(s)	543, 853
TspDTI	ATGAA	5 cut(s)	114, 317, 581, 594, 779
TspRI	CASTG	3 cut(s)	604, 610, 787
Vha464I	CTTAAG	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	35, 422
XbaI	TCTAGA	1 cut(s)	736
XhoI	CTCGAG	1 cut(s)	932
XspI	CTAG	3 cut(s)	98, 737, 952
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.