FvH4_2g17270

Ankyrin repeat domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
14933483 .. 14937353
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17270.t1

Sequence Viewer

Length: 1101 bp
ATGGCTTCTGCTCAGAAGGATTCGCCTGCTGATGCAAAGACAGTTCCCAAGGAAGAGAAGACTTCCAAATCTGAGACATCTTCTGGGGAGTCGCCGGCACCACAAGCAGCGCCGGGAGGGTTCCCGTTTCCAGCAGGAGCAGGAGGAATGCCTTTTCCGTTCCCGGAAGCTGGAGGCGCTGGTCCCAATCCTTTTGATTTCTCGGCCATGACTGGCTTGCTGAATGATCCAAGTATCAAGGAACTAGCTGAACAGATAGCGAAAGACCCCTCATTCACCCAGATGGCAGAGCAACTTCAGAAAACTTTTCAAGGTGCCCCAGCTGATGAGGGTGTCCCTCAGTTTGATAGTCAACAATACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTATGAACATGGCTGAGCGCCTTGGTAGTGCTTTGATGCAGGATCCATCCATGAATTCAATGCTTGAGAGTTTCACGAATCCATCAAACAAAGATCAGCTTGAGGAGCGTATGGCACGCATTAAAGAAGATCCTTCTTTGAAGCCTATTTTAGAAGAGATAGAGACTGGGGGTCCTGCTGCCATGATGAGATACTGGAATGATAAAGATGTTTTACAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGCCTGATGGAGCACCTTCTGAAGTTTCAGGGGATAAGCCCTGGTCACCTGAAGAAGCAGAAGATGCTGGAGCTGAGGATGAACCCATAGTTCATCACACTGCTAGTGTTGGTGATGTGGAGGGTTTGAAAAATGCGCTAGCTGCTGGTGCTGACAAAGATGAGGAAGATTCAGAAGGAAGGACAGCATTGCATTTTGCTTGCGGCTATGGCGAGGCAAAGTGTGCTCAGGTGCTTCTAGAGGCTGGAGCAAAAGTGGATGCCTTGGATAAGAATAAAAACACTGCACTTCATTATGCAGCTGGTTATGGCAGGAAGGAATGTGTGGCCCTTCTATTGGAAAACGGCGCAGCTGTCACACTTGCAAACATGGATGGGAAGACCCCCATTGACGTCGCCAAGCTCAACAACCAAAACGATGTACTTAAGTTGCTCGAGAAGGATGCTTTCCTCTAG

Protein Analysis

367

Amino Acids

38.9

Weight (kDa)

4.45

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STI1-HOP_DP PF17830 168 - 212 1e-08 STI1/HOP, DP domain
Ank_KRIT1 PF24521 245 - 355 9.9e-06 KRIT1 ankyrin-repeats domain
Ank_2 PF12796 247 - 336 1e-18 Ankyrin repeats (3 copies)
Ank PF00023 275 - 306 1.9e-06 Ankyrin repeat
Ank_4 PF13637 289 - 328 1.2e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 294 - 348 4e-09 Ankyrin repeats (many copies)
Ank_2 PF12796 298 - 361 1.6e-10 Ankyrin repeats (3 copies)
Ank PF00023 307 - 338 2.3e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1041
AccB1I GGYRCC 2 cut(s) 97, 314
AciI CCGC 1 cut(s) 849
AclWI GGATC 4 cut(s) 221, 434, 447, 521
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 3 cut(s) 281, 687, 717
AcyI GRCGYC 1 cut(s) 1038
AfaI GTAC 1 cut(s) 1068
AfiI CCNNNNNNNGG 2 cut(s) 170, 982
AflII CTTAAG 1 cut(s) 1070
AgsI TTSAA 4 cut(s) 311, 456, 538, 775
AhdI GACNNNNNGTC 1 cut(s) 567
AjnI CCWGG 1 cut(s) 686
AluBI AGCT 9 cut(s) 170, 248, 323, 496, 719, 788, 947, 998, 1048
AluI AGCT 9 cut(s) 170, 248, 323, 496, 719, 788, 947, 998, 1048
Alw21I GWGCWC 2 cut(s) 661, 874
Alw26I GTCTC 2 cut(s) 68, 554
AlwI GGATC 4 cut(s) 221, 434, 447, 521
Ama87I CYCGRG 1 cut(s) 1079
AoxI GGCC 3 cut(s) 204, 647, 972
ApeKI GCWGC 5 cut(s) 107, 575, 788, 944, 995
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 5 cut(s) 112, 179, 417, 784, 995
AspS9I GGNCC 4 cut(s) 182, 569, 647, 973
AsuC2I CCSGG 2 cut(s) 114, 164
AsuHPI GGTGA 3 cut(s) 268, 684, 770
AsuNHI GCTAGC 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 1079
AvaII GGWCC 2 cut(s) 182, 569
BaeGI GKGCMC 1 cut(s) 319
BamHI GGATCC 1 cut(s) 439
BanI GGYRCC 2 cut(s) 97, 314
BbsI GAAGAC 2 cut(s) 65, 1031
Bbv12I GWGCWC 2 cut(s) 661, 874
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 5 cut(s) 119, 562, 775, 956, 1007
BccI CCATC 5 cut(s) 277, 451, 487, 647, 1013
BceAI ACGGC 1 cut(s) 1006
BcgI CGANNNNNNTGC 1 cut(s) 1070
BciT130I CCWGG 1 cut(s) 688
BcnI CCSGG 2 cut(s) 114, 164
BcoDI GTCTC 2 cut(s) 68, 554
BfaI CTAG 5 cut(s) 245, 750, 785, 884, 1099
BfoI RGCGCY 3 cut(s) 113, 180, 418
BfrI CTTAAG 1 cut(s) 1070
BisI GCNGC 6 cut(s) 108, 576, 789, 850, 945, 996
BlpI GCTNAGC 1 cut(s) 411
BlsI GCNGC 6 cut(s) 109, 577, 790, 851, 946, 997
Bme1390I CCNGG 3 cut(s) 114, 164, 688
Bme18I GGWCC 2 cut(s) 182, 569
BmeRI GACNNNNNGTC 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 1079
BmgT120I GGNCC 4 cut(s) 182, 569, 647, 973
BmiI GGNNCC 6 cut(s) 99, 122, 184, 316, 441, 570
BmrFI CCNGG 3 cut(s) 114, 164, 688
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 5 cut(s) 22, 423, 700, 895, 1078
BmtI GCTAGC 1 cut(s) 788
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 2 cut(s) 65, 1031
BpmI CTGGAG 3 cut(s) 192, 735, 912
Bpu10I CCTNAGC 2 cut(s) 720, 873
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 482, 518
BpuMI CCSGG 2 cut(s) 114, 164
BsaHI GRCGYC 1 cut(s) 1038
BsaJI CCNNGG 4 cut(s) 48, 418, 686, 909
BsaXI ACNNNNNCTCC 2 cut(s) 885, 915
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 982
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 217, 568, 596
Bse3DI GCAATG 2 cut(s) 636, 833
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 4 cut(s) 48, 418, 686, 909
BseGI GGATG 5 cut(s) 443, 730, 910, 1024, 1093
BseLI CCNNNNNNNGG 2 cut(s) 170, 982
BseMI GCAATG 2 cut(s) 636, 833
BseMII CTCAG 7 cut(s) 26, 63, 353, 402, 407, 711, 887
BseNI ACTGG 3 cut(s) 217, 568, 596
BseRI GAGGAG 1 cut(s) 515
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 5 cut(s) 119, 562, 775, 956, 1007
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 3 cut(s) 206, 649, 974
BshNI GGYRCC 2 cut(s) 97, 314
BsiHKAI GWGCWC 2 cut(s) 661, 874
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 3 cut(s) 95, 113, 164
BslFI GGGAC 2 cut(s) 168, 320
BslI CCNNNNNNNGG 2 cut(s) 170, 982
BsmAI GTCTC 2 cut(s) 68, 554
BsmFI GGGAC 2 cut(s) 168, 320
BsmI GAATGC 1 cut(s) 153
BsnI GGCC 3 cut(s) 206, 649, 974
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 3 cut(s) 319, 661, 874
Bsp143I GATC 4 cut(s) 226, 439, 490, 526
Bsp1720I GCTNAGC 1 cut(s) 411
BspACI CCGC 1 cut(s) 849
BspANI GGCC 3 cut(s) 206, 649, 974
BspCNI CTCAG 7 cut(s) 25, 64, 352, 403, 406, 712, 886
BspLI GGNNCC 6 cut(s) 99, 122, 184, 316, 441, 570
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 4 cut(s) 221, 434, 447, 521
BspT107I GGYRCC 2 cut(s) 97, 314
BspTI CTTAAG 1 cut(s) 1070
BsrDI GCAATG 2 cut(s) 636, 833
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 217, 568, 596
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 48, 418, 686, 909
BssMI GATC 4 cut(s) 226, 439, 490, 526
BssNI GRCGYC 1 cut(s) 1038
BssT1I CCWWGG 3 cut(s) 48, 418, 909
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 48, 546
BstACI GRCGYC 1 cut(s) 1038
BstAFI CTTAAG 1 cut(s) 1070
BstAPI GCANNNNNTGC 2 cut(s) 710, 869
BstC8I GCNNGC 6 cut(s) 27, 96, 218, 514, 786, 847
BstDEI CTNAG 7 cut(s) 12, 72, 339, 393, 411, 720, 873
BstEII GGTNACC 1 cut(s) 690
BstF5I GGATG 5 cut(s) 443, 730, 910, 1024, 1093
BstH2I RGCGCY 3 cut(s) 113, 180, 418
BstHHI GCGC 5 cut(s) 112, 179, 417, 784, 995
BstKTI GATC 4 cut(s) 229, 442, 493, 529
BstMAI GTCTC 2 cut(s) 68, 554
BstMBI GATC 4 cut(s) 226, 439, 490, 526
BstMWI GCNNNNNNNGC 8 cut(s) 104, 176, 502, 710, 788, 794, 855, 869
BstNI CCWGG 1 cut(s) 688
BstPI GGTNACC 1 cut(s) 690
BstSCI CCNGG 3 cut(s) 112, 162, 686
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 5 cut(s) 119, 562, 775, 956, 1007
BstV2I GAAGAC 2 cut(s) 65, 1031
BstX2I RGATCY 2 cut(s) 439, 526
BstYI RGATCY 2 cut(s) 439, 526
BsuRI GGCC 3 cut(s) 206, 649, 974
BtsCI GGATG 5 cut(s) 443, 730, 910, 1024, 1093
BtsI GCAGTG 2 cut(s) 744, 927
BtsIMutI CAGTG 2 cut(s) 744, 927
Cac8I GCNNGC 6 cut(s) 27, 96, 218, 514, 786, 847
CfoI GCGC 5 cut(s) 112, 179, 417, 784, 995
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 4 cut(s) 182, 569, 647, 973
Csp6I GTAC 1 cut(s) 1067
CviAII CATG 6 cut(s) 208, 370, 406, 448, 580, 1015
CviQI GTAC 1 cut(s) 1067
DdeI CTNAG 7 cut(s) 12, 72, 339, 393, 411, 720, 873
DpnI GATC 4 cut(s) 228, 441, 492, 528
DpnII GATC 4 cut(s) 226, 439, 490, 526
DriI GACNNNNNGTC 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 48, 546
Eam1105I GACNNNNNGTC 1 cut(s) 567
EarI CTCTTC 2 cut(s) 48, 546
Eco130I CCWWGG 3 cut(s) 48, 418, 909
Eco47I GGWCC 2 cut(s) 182, 569
Eco57I CTGAAG 3 cut(s) 281, 687, 717
Eco88I CYCGRG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 690
EcoO109I RGGNCCY 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 3 cut(s) 48, 418, 909
ErhI CCWWGG 3 cut(s) 48, 418, 909
FaeI CATG 6 cut(s) 211, 373, 409, 451, 583, 1018
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FaqI GGGAC 2 cut(s) 168, 320
FatI CATG 6 cut(s) 207, 369, 405, 447, 579, 1014
Fnu4HI GCNGC 6 cut(s) 108, 576, 789, 850, 945, 996
FokI GGATG 4 cut(s) 430, 737, 917, 1031
Fsp4HI GCNGC 6 cut(s) 108, 576, 789, 850, 945, 996
FspBI CTAG 5 cut(s) 245, 750, 785, 884, 1099
GlaI GCGC 5 cut(s) 111, 178, 416, 783, 994
GluI GCNGC 6 cut(s) 108, 576, 789, 850, 945, 996
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 3 cut(s) 192, 735, 912
HaeII RGCGCY 3 cut(s) 113, 180, 418
HaeIII GGCC 3 cut(s) 206, 649, 974
HapII CCGG 3 cut(s) 95, 113, 164
HhaI GCGC 5 cut(s) 112, 179, 417, 784, 995
Hin1I GRCGYC 1 cut(s) 1038
Hin1II CATG 6 cut(s) 211, 373, 409, 451, 583, 1018
Hin6I GCGC 5 cut(s) 110, 177, 415, 782, 993
HinP1I GCGC 5 cut(s) 110, 177, 415, 782, 993
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 5 cut(s) 20, 89, 388, 475, 815
HpaII CCGG 3 cut(s) 95, 113, 164
HphI GGTGA 3 cut(s) 268, 684, 770
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 5 cut(s) 15, 73, 300, 667, 820
Hpy188III TCNNGA 3 cut(s) 472, 884, 1081
Hpy8I GTNNAC 1 cut(s) 353
Hpy99I CGWCG 1 cut(s) 1043
HpyAV CCTTC 8 cut(s) 10, 540, 672, 815, 819, 955, 986, 1078
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 1038
HpyCH4V TGCA 9 cut(s) 35, 373, 385, 436, 641, 838, 932, 944, 1010
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 176, 502, 710, 788, 794, 855, 869
HpyF3I CTNAG 7 cut(s) 12, 72, 339, 393, 411, 720, 873
HpySE526I ACGT 1 cut(s) 1038
Hsp92I GRCGYC 1 cut(s) 1038
Hsp92II CATG 6 cut(s) 211, 373, 409, 451, 583, 1018
HspAI GCGC 5 cut(s) 110, 177, 415, 782, 993
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 4 cut(s) 226, 439, 490, 526
LmnI GCTCC 5 cut(s) 137, 502, 656, 716, 893
Lsp1109I GCAGC 5 cut(s) 119, 562, 775, 956, 1007
LweI GCATC 5 cut(s) 22, 423, 700, 895, 1078
MaeI CTAG 5 cut(s) 245, 750, 785, 884, 1099
MaeII ACGT 1 cut(s) 1038
MaeIII GTNAC 2 cut(s) 690, 1000
MalI GATC 4 cut(s) 228, 441, 492, 528
MboI GATC 4 cut(s) 226, 439, 490, 526
MboII GAAGA 9 cut(s) 65, 70, 72, 536, 563, 710, 719, 824, 1036
MflI RGATCY 2 cut(s) 439, 526
MhlI GDGCHC 3 cut(s) 319, 661, 874
MluCI AATT 1 cut(s) 451
MlyI GAGTC 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 94
MseI TTAA 2 cut(s) 519, 1071
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 3 cut(s) 323, 947, 998
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 3 cut(s) 95, 113, 164
MspR9I CCNGG 3 cut(s) 114, 164, 688
Mva1269I GAATGC 1 cut(s) 153
MvaI CCWGG 1 cut(s) 688
MwoI GCNNNNNNNGC 8 cut(s) 104, 176, 502, 710, 788, 794, 855, 869
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 2 cut(s) 114, 164
NdeII GATC 4 cut(s) 226, 439, 490, 526
NgoMIV GCCGGC 1 cut(s) 94
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 6 cut(s) 211, 373, 409, 451, 583, 1018
NlaIV GGNNCC 6 cut(s) 99, 122, 184, 316, 441, 570
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 690, 1000
PaeR7I CTCGAG 1 cut(s) 1079
PctI GAATGC 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 4 cut(s) 20, 388, 475, 815
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 6 cut(s) 109, 577, 790, 851, 946, 997
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 686
PspEI GGTNACC 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 6 cut(s) 99, 122, 184, 316, 441, 570
PspPI GGNCC 4 cut(s) 182, 569, 647, 973
PspPPI RGGWCCY 1 cut(s) 569
PsuI RGATCY 2 cut(s) 439, 526
PvuII CAGCTG 3 cut(s) 323, 947, 998
RsaI GTAC 1 cut(s) 1068
RsaNI GTAC 1 cut(s) 1067
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 519, 1071
SatI GCNGC 6 cut(s) 108, 576, 789, 850, 945, 996
Sau3AI GATC 4 cut(s) 226, 439, 490, 526
Sau96I GGNCC 4 cut(s) 182, 569, 647, 973
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 114, 164, 688
SduI GDGCHC 3 cut(s) 319, 661, 874
SfaNI GCATC 5 cut(s) 22, 423, 700, 895, 1078
Sfr274I CTCGAG 1 cut(s) 1079
SinI GGWCC 2 cut(s) 182, 569
SlaI CTCGAG 1 cut(s) 1079
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 4 cut(s) 461, 497, 1070, 1079
SmoI CTYRAG 4 cut(s) 461, 497, 1070, 1079
Sse9I AATT 1 cut(s) 451
SsiI CCGC 1 cut(s) 849
SspMI CTAG 5 cut(s) 245, 750, 785, 884, 1099
StyD4I CCNGG 3 cut(s) 112, 162, 686
StyI CCWWGG 3 cut(s) 48, 418, 909
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 1041
TaqI TCGA 1 cut(s) 1080
TasI AATT 1 cut(s) 451
TatI WGTACW 1 cut(s) 1066
TauI GCSGC 1 cut(s) 852
TfiI GAWTC 4 cut(s) 20, 388, 475, 815
Tru1I TTAA 2 cut(s) 519, 1071
Tru9I TTAA 2 cut(s) 519, 1071
TscAI CASTG 2 cut(s) 751, 934
TseFI GTSAC 2 cut(s) 690, 1000
TseI GCWGC 5 cut(s) 107, 575, 788, 944, 995
Tsp45I GTSAC 2 cut(s) 690, 1000
TspDTI ATGAA 5 cut(s) 416, 464, 728, 741, 926
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 751, 934
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 2 cut(s) 182, 569
XapI RAATTY 1 cut(s) 451
XbaI TCTAGA 1 cut(s) 883
XhoI CTCGAG 1 cut(s) 1079
XspI CTAG 5 cut(s) 245, 750, 785, 884, 1099
ZraI GACGTC 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.