Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

43838848 .. 43843292

Gene Structure 4445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTGTTTTCACTTTCCTTTAACAACTCAAGAGCTCTCTGTTTTTTCCTCACAATTGTATCATATGTGGTATACGCAGGATCCAAGTATCAAGGAACTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCAGAGCAACTTCAGAAAACTTTTCAAGGTGCACCAGTTGATGAAGGTGTCCCTCAGTTTGATAGTCAACAGTACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTATGACCATGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCCATCCATGAATACAATGCTTGAGAGTTTCACAAATCCATCAAACAAAGATCAGCTGGAGGAGCGTATGGCACGCATCAAAGATGATCCTTCTTTGAAGCCTATTTTAGAAGAGATAGAGACTGGGGGTCCCGCTGCCATGATGAGATACTGGAATGATAAAGACGTGTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGGCTGATGGATCCCCTTCTGAAGTTTCAGGAGAAAAGCCCTGGTCACCAGAGGAAGCAGAAGATGCTGGAGCTGAGGATGAACCCATTGTTCATCACACTGCCAGTGTTGGTGATGTGGAGGGTTTGAAAAATGCGCTTGCTGCTGGTTCTGACAAAGATGAGGAAGATTCCGAAGGAAGGACAGCATTGCATTTTGCTTGCGGATATGGCGAGGCGAAGTGTGCTCAGGTGCTTCTAGAGGCTGGAGCAAAAGTGGATGCCTTAGATAAGAATAAAAACACTGCACTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGTGTGGCCCTTCTATTGGAAAATGGTGCAGCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

285

Amino Acids

31.25

Weight (kDa)

4.46

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	119 - 163	7.7e-09	STI1/HOP, DP domain
Ank_2	PF12796	198 - 283	2e-18	Ankyrin repeats (3 copies)
Ank	PF00023	226 - 257	1.3e-06	Ankyrin repeat
Ank_4	PF13637	240 - 279	7.3e-08	Ankyrin repeats (many copies)
Ank	PF00023	258 - 284	6.8e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	2 cut(s)	426, 702
AclWI	GGATC	8 cut(s)	74, 87, 113, 287, 300, 374, 504, 517
AcuI	CTGAAG	2 cut(s)	134, 540
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	678, 835
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	4 cut(s)	130, 164, 391, 628
AhdI	GACNNNNNGTC	1 cut(s)	420
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	5 cut(s)	34, 101, 349, 572, 851
AluI	AGCT	5 cut(s)	34, 101, 349, 572, 851
Alw21I	GWGCWC	3 cut(s)	36, 172, 727
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	168
AlwI	GGATC	8 cut(s)	74, 87, 113, 287, 300, 374, 504, 517
AoxI	GGCC	1 cut(s)	825
ApaLI	GTGCAC	1 cut(s)	168
ApeKI	GCWGC	4 cut(s)	428, 641, 797, 848
AspLEI	GCGC	2 cut(s)	270, 637
AspS9I	GGNCC	2 cut(s)	422, 826
AsuHPI	GGTGA	2 cut(s)	537, 623
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
BamHI	GGATCC	3 cut(s)	79, 292, 509
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	3 cut(s)	36, 172, 727
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	415, 628, 809
BccI	CCATC	4 cut(s)	130, 304, 340, 500
BciT130I	CCWGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	98, 737
BfoI	RGCGCY	1 cut(s)	271
BisI	GCNGC	4 cut(s)	429, 642, 798, 849
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	4 cut(s)	430, 643, 799, 850
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	422
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	422, 826
BmiI	GGNNCC	5 cut(s)	81, 294, 423, 424, 511
BmrFI	CCNGG	1 cut(s)	541
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	4 cut(s)	276, 378, 553, 748
BmuI	ACTGGG	1 cut(s)	426
BpmI	CTGGAG	3 cut(s)	371, 588, 765
Bpu10I	CCTNAGC	2 cut(s)	573, 726
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	12, 335
BsaJI	CCNNGG	3 cut(s)	258, 271, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 835
Bse118I	RCCGGY	1 cut(s)	800
Bse1I	ACTGG	4 cut(s)	173, 421, 449, 603
Bse3DI	GCAATG	2 cut(s)	489, 686
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	258, 271, 539
BseGI	GGATG	3 cut(s)	296, 583, 763
BseLI	CCNNNNNNNGG	2 cut(s)	678, 835
BseMI	GCAATG	2 cut(s)	489, 686
BseMII	CTCAG	5 cut(s)	206, 255, 260, 564, 740
BseNI	ACTGG	4 cut(s)	173, 421, 449, 603
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	415, 628, 809
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	827
BsiHKAI	GWGCWC	3 cut(s)	36, 172, 727
BsiSI	CCGG	1 cut(s)	801
BslFI	GGGAC	2 cut(s)	173, 408
BslI	CCNNNNNNNGG	2 cut(s)	678, 835
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	2 cut(s)	173, 408
BsnI	GGCC	1 cut(s)	827
Bsp1286I	GDGCHC	3 cut(s)	36, 172, 727
Bsp143I	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
Bsp1720I	GCTNAGC	1 cut(s)	264
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	2 cut(s)	426, 702
BspANI	GGCC	1 cut(s)	827
BspCNI	CTCAG	5 cut(s)	205, 256, 259, 565, 739
BspLI	GGNNCC	5 cut(s)	81, 294, 423, 424, 511
BspPI	GGATC	8 cut(s)	74, 87, 113, 287, 300, 374, 504, 517
BsrDI	GCAATG	2 cut(s)	489, 686
BsrFI	RCCGGY	1 cut(s)	800
BsrI	ACTGG	4 cut(s)	173, 421, 449, 603
BssAI	RCCGGY	1 cut(s)	800
BssECI	CCNNGG	3 cut(s)	258, 271, 539
BssMI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
BssNAI	GTATAC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	367, 639, 700
BstDEI	CTNAG	6 cut(s)	192, 246, 264, 573, 726, 763
BstDSI	CCRYGG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	296, 583, 763
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	270, 637
BstKTI	GATC	6 cut(s)	82, 121, 295, 346, 382, 512
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
BstMWI	GCNNNNNNNGC	6 cut(s)	355, 500, 563, 641, 708, 722
BstNI	CCWGG	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	415, 628, 809
BstX2I	RGATCY	4 cut(s)	79, 118, 292, 509
BstYI	RGATCY	4 cut(s)	79, 118, 292, 509
BstZ17I	GTATAC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	827
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	296, 583, 763
BtsI	GCAGTG	2 cut(s)	597, 780
BtsIMutI	CAGTG	3 cut(s)	597, 610, 780
Cac8I	GCNNGC	3 cut(s)	367, 639, 700
CfoI	GCGC	2 cut(s)	270, 637
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	422, 826
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	4 cut(s)	223, 259, 301, 433
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	6 cut(s)	192, 246, 264, 573, 726, 763
DpnI	GATC	6 cut(s)	81, 120, 294, 345, 381, 511
DpnII	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
DriI	GACNNNNNGTC	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	134, 540
Eco91I	GGTNACC	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	422
EcoO65I	GGTNACC	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	4 cut(s)	226, 262, 304, 436
FaqI	GGGAC	2 cut(s)	173, 408
FatI	CATG	4 cut(s)	222, 258, 300, 432
FauI	CCCGC	1 cut(s)	433
FauNDI	CATATG	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	429, 642, 798, 849
FokI	GGATG	3 cut(s)	283, 590, 770
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	4 cut(s)	429, 642, 798, 849
FspBI	CTAG	2 cut(s)	98, 737
GlaI	GCGC	2 cut(s)	269, 636
GluI	GCNGC	4 cut(s)	429, 642, 798, 849
GsuI	CTGGAG	3 cut(s)	371, 588, 765
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	801
HhaI	GCGC	2 cut(s)	270, 637
Hin1II	CATG	4 cut(s)	226, 262, 304, 436
Hin6I	GCGC	2 cut(s)	268, 635
HinP1I	GCGC	2 cut(s)	268, 635
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	241, 668
HpaII	CCGG	1 cut(s)	801
HphI	GGTGA	2 cut(s)	537, 623
Hpy166II	GTNNAC	3 cut(s)	72, 170, 206
Hpy188I	TCNGA	4 cut(s)	153, 520, 652, 673
Hpy188III	TCNNGA	3 cut(s)	29, 528, 737
Hpy8I	GTNNAC	3 cut(s)	72, 170, 206
HpyAV	CCTTC	8 cut(s)	132, 176, 393, 525, 668, 672, 808, 839
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	6 cut(s)	355, 500, 563, 641, 708, 722
HpyF3I	CTNAG	6 cut(s)	192, 246, 264, 573, 726, 763
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	226, 262, 304, 436
HspAI	GCGC	2 cut(s)	268, 635
KflI	GGGWCCC	1 cut(s)	422
Kzo9I	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
LmnI	GCTCC	3 cut(s)	355, 569, 746
Lsp1109I	GCAGC	3 cut(s)	415, 628, 809
LweI	GCATC	4 cut(s)	276, 378, 553, 748
MaeI	CTAG	2 cut(s)	98, 737
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	6 cut(s)	81, 120, 294, 345, 381, 511
MboI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
MboII	GAAGA	3 cut(s)	416, 572, 677
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	4 cut(s)	79, 118, 292, 509
MhlI	GDGCHC	3 cut(s)	36, 172, 727
MluCI	AATT	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	3 cut(s)	349, 428, 851
MspI	CCGG	1 cut(s)	801
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	6 cut(s)	355, 500, 563, 641, 708, 722
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
NlaIII	CATG	4 cut(s)	226, 262, 304, 436
NlaIV	GGNNCC	5 cut(s)	81, 294, 423, 424, 511
NmuCI	GTSAC	1 cut(s)	543
NsiI	ATGCAT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	241, 668
PkrI	GCNGC	4 cut(s)	430, 643, 799, 850
PpuMI	RGGWCCY	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	539
PspEI	GGTNACC	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	5 cut(s)	81, 294, 423, 424, 511
PspPI	GGNCC	2 cut(s)	422, 826
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	4 cut(s)	79, 118, 292, 509
PvuII	CAGCTG	2 cut(s)	349, 851
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	4 cut(s)	429, 642, 798, 849
Sau3AI	GATC	6 cut(s)	79, 118, 292, 343, 379, 509
Sau96I	GGNCC	2 cut(s)	422, 826
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	3 cut(s)	36, 172, 727
SfaNI	GCATC	4 cut(s)	276, 378, 553, 748
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	27, 314
SmoI	CTYRAG	2 cut(s)	27, 314
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	426, 702
SspMI	CTAG	2 cut(s)	98, 737
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	462
TasI	AATT	1 cut(s)	53
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	241, 668
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	3 cut(s)	604, 610, 787
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	4 cut(s)	428, 641, 797, 848
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	6 cut(s)	114, 195, 317, 581, 594, 779
TspRI	CASTG	3 cut(s)	604, 610, 787
VneI	GTGCAC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	422
XbaI	TCTAGA	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	2 cut(s)	98, 737
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.