Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

23237430 .. 23240547

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1145800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTTGGCGAAAAGCCAGTTTCAACAGAGAACAAAAGTTCCAAACCTGAAACAACAGAGAACAAAACTCCCAAGCCTGAGGCATCGTCTGGAGACTCACTGTCAGGACAACCAGGGGCTACCCCTTTCCAAATTCCAGAGGCTGGATTTCCTCCCAATCCTTTTGATTTCTCAGCCATGACTGGCTTGCTGAATGATCCTAGCATTAAGGAATTAGCTGAACAGATAGCAAAGGATCCTTCATTCAACCAGATGGCAGACCAACTTCAGAAAACTTTTCAAGGTGTGTCAGTTGATGAAGGTGTCCCTCAGTTTGATAGTCAACAGTACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTCATGACCATGGCTGAGCGCCTTGGTAGTGCATTGATGCAGGATCCATCTATGAATACCATGCTTGAGAGTTTCGCCAATCCCTCGAACAAAGATCAGCTTGAGGAACGCATGTCACGTATCAAAGAAGATCCTTCTTTGAAACCTATTTTGGAAGAAATAGAAACTGGTGGTCCAGCTGCCATGATGAGATACTGGAATGATAAAGATGTTTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGGATGCAGCTACTTCTACTGAAGCACCAGAAGAAGCAGAAGATGCCGGAAATGAGGATGAATCAATTGTTCATCACACTGCTAGTGTTGGTGACGTGGAGGGTTTGAAAGCTGCCTTAGCATCTGGTGCTGACAAGGATGAGGAAGATTCAGAAGGGAGGACAGCATTACATTTTGCATGTGGATATGGTGAAGTGTGCTCAAGCTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

277

Amino Acids

29.71

Weight (kDa)

4.26

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	158 - 202	6.7e-09	STI1/HOP, DP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AclWI	GGATC	6 cut(s)	191, 230, 243, 404, 417, 491
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	2 cut(s)	251, 657
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	24, 247, 281, 508, 724
AhdI	GACNNNNNGTC	1 cut(s)	100
AjiI	CACGTC	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	6 cut(s)	218, 466, 545, 626, 728, 822
AluI	AGCT	6 cut(s)	218, 466, 545, 626, 728, 822
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	6 cut(s)	191, 230, 243, 404, 417, 491
AlwNI	CAGNNNCTG	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	545, 623, 728
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	719, 818
AvaII	GGWCC	1 cut(s)	539
AxyI	CCTNAGG	1 cut(s)	78
BamHI	GGATCC	2 cut(s)	235, 409
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	3 cut(s)	532, 635, 715
BccI	CCATC	2 cut(s)	247, 421
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	2 cut(s)	201, 699
BfoI	RGCGCY	1 cut(s)	388
BisI	GCNGC	3 cut(s)	546, 624, 729
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	3 cut(s)	547, 625, 730
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	539
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmgBI	CACGTC	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	2 cut(s)	237, 411
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	5 cut(s)	92, 393, 610, 649, 746
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	733
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	3 cut(s)	452, 488, 802
BsaAI	YACGTR	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	113, 375, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	4 cut(s)	17, 187, 538, 566
Bse21I	CCTNAGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	113, 375, 388
BseGI	GGATG	3 cut(s)	625, 679, 760
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	5 cut(s)	69, 186, 323, 372, 377
BseNI	ACTGG	4 cut(s)	17, 187, 538, 566
BseXI	GCAGC	3 cut(s)	532, 635, 715
BsiHKAI	GWGCWC	1 cut(s)	818
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp143I	GATC	5 cut(s)	196, 235, 409, 460, 496
Bsp1720I	GCTNAGC	1 cut(s)	381
Bsp19I	CCATGG	1 cut(s)	375
BspCNI	CTCAG	5 cut(s)	70, 185, 322, 373, 376
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	237, 411
BspPI	GGATC	6 cut(s)	191, 230, 243, 404, 417, 491
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	4 cut(s)	17, 187, 538, 566
BssECI	CCNNGG	3 cut(s)	113, 375, 388
BssMI	GATC	5 cut(s)	196, 235, 409, 460, 496
BssT1I	CCWWGG	2 cut(s)	375, 388
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	102, 327
BstAPI	GCANNNNNTGC	2 cut(s)	659, 743
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	6 cut(s)	78, 172, 309, 363, 381, 733
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	625, 679, 760
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	5 cut(s)	199, 238, 412, 463, 499
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	5 cut(s)	196, 235, 409, 460, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	659, 734, 743
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	481, 798
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	532, 635, 715
BstX2I	RGATCY	3 cut(s)	235, 409, 496
BstYI	RGATCY	3 cut(s)	235, 409, 496
Bsu36I	CCTNAGG	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	375
BtrI	CACGTC	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	625, 679, 760
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	98, 693
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	143
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	8 cut(s)	178, 340, 370, 376, 427, 478, 550, 795
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	6 cut(s)	78, 172, 309, 363, 381, 733
DpnI	GATC	5 cut(s)	198, 237, 411, 462, 498
DpnII	GATC	5 cut(s)	196, 235, 409, 460, 496
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	375, 388
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	2 cut(s)	251, 657
Eco81I	CCTNAGG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	375, 388
ErhI	CCWWGG	2 cut(s)	375, 388
FaeI	CATG	8 cut(s)	181, 343, 373, 379, 430, 481, 553, 798
FalI	AAGNNNNNCTT	3 cut(s)	450, 482, 811
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	8 cut(s)	177, 339, 369, 375, 426, 477, 549, 794
Fnu4HI	GCNGC	3 cut(s)	546, 624, 729
FokI	GGATG	3 cut(s)	632, 686, 767
Fsp4HI	GCNGC	3 cut(s)	546, 624, 729
FspBI	CTAG	2 cut(s)	201, 699
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	3 cut(s)	546, 624, 729
GsuI	CTGGAG	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	388
HapII	CCGG	1 cut(s)	663
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	8 cut(s)	181, 343, 373, 379, 430, 481, 553, 798
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	323
HindII	GTYRAC	1 cut(s)	323
HinfI	GANTC	4 cut(s)	95, 358, 677, 764
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	2 cut(s)	719, 818
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	270, 769
Hpy188III	TCNNGA	5 cut(s)	90, 105, 137, 370, 828
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	4 cut(s)	249, 293, 510, 764
HpyCH4III	ACNGT	2 cut(s)	102, 327
HpyCH4IV	ACGT	2 cut(s)	484, 711
HpyCH4V	TGCA	8 cut(s)	343, 355, 398, 406, 583, 611, 623, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	659, 734, 743
HpyF3I	CTNAG	6 cut(s)	78, 172, 309, 363, 381, 733
HpySE526I	ACGT	2 cut(s)	484, 711
Hsp92II	CATG	8 cut(s)	181, 343, 373, 379, 430, 481, 553, 798
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	5 cut(s)	196, 235, 409, 460, 496
Lsp1109I	GCAGC	3 cut(s)	532, 635, 715
LweI	GCATC	5 cut(s)	92, 393, 610, 649, 746
MaeI	CTAG	2 cut(s)	201, 699
MaeII	ACGT	2 cut(s)	484, 711
MaeIII	GTNAC	2 cut(s)	480, 707
MalI	GATC	5 cut(s)	198, 237, 411, 462, 498
MboI	GATC	5 cut(s)	196, 235, 409, 460, 496
MboII	GAAGA	6 cut(s)	506, 533, 659, 668, 773, 816
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	3 cut(s)	235, 409, 496
MhlI	GDGCHC	1 cut(s)	818
MluCI	AATT	3 cut(s)	132, 212, 681
MlyI	GAGTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	659, 734, 743
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	5 cut(s)	196, 235, 409, 460, 496
NlaIII	CATG	8 cut(s)	181, 343, 373, 379, 430, 481, 553, 798
NlaIV	GGNNCC	2 cut(s)	237, 411
NmuCI	GTSAC	2 cut(s)	480, 707
NspI	RCATGY	2 cut(s)	481, 798
PagI	TCATGA	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	358, 677, 764
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	547, 625, 730
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	237, 411
PspPI	GGNCC	1 cut(s)	539
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	3 cut(s)	235, 409, 496
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	546, 624, 729
Sau3AI	GATC	5 cut(s)	196, 235, 409, 460, 496
Sau96I	GGNCC	1 cut(s)	539
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	5 cut(s)	92, 393, 610, 649, 746
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	3 cut(s)	431, 467, 817
SmoI	CTYRAG	3 cut(s)	431, 467, 817
Sse9I	AATT	3 cut(s)	132, 212, 681
SspMI	CTAG	2 cut(s)	201, 699
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	2 cut(s)	375, 388
TaaI	ACNGT	2 cut(s)	102, 327
TaiI	ACGT	2 cut(s)	487, 714
TaqI	TCGA	1 cut(s)	452
TasI	AATT	3 cut(s)	132, 212, 681
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	3 cut(s)	358, 677, 764
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	105, 700
TseFI	GTSAC	2 cut(s)	480, 707
TseI	GCWGC	3 cut(s)	545, 623, 728
Tsp45I	GTSAC	2 cut(s)	480, 707
TspDTI	ATGAA	6 cut(s)	231, 312, 358, 434, 677, 690
TspRI	CASTG	2 cut(s)	105, 700
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	481, 798
XspI	CTAG	2 cut(s)	201, 699
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.