Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007271

Physical Location & Seq

Genomic Coordinates Reverse (-)

47297785 .. 47302274

Gene Structure 4490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTGGTATACGCAGGATCCAAGTATCAAGGAACTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCAGAGCAACTTCAGAAAACTTTTCAAGGTGCACCAGTTGACGAAGGTGTCCCTCAGTTTGATAGTCAACAGTACTATTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTATGACCATGGCTGAGCGCCTCGGTAATGCATTGATGCAGGATCCATCCATGAATACAATGCTTGAGAGTTTCGCAAATCCATCAAACAAAGATCAGCTGGAGGAGCGTATGGCACGCATCAAAGATGATCCTTCTTTGAAGCCTATTTTAGAAGAGATAGAGACTGGGGGTCCTGCTGCCATGATGAGATACTGGAATGATAAAGACGTGTTGCAGAAGTTGGGAGAAGCAATGGGTCTTGCAGTTGGGCCTGATGGATCCCCTTCTGAAGTTTCAGGAGAAAAGCCCTGGTCACCAGAGGAAGCAGAAGATGCTGGAGCTGAGGATGAACCCATTGTTCATCACACTGCCAGTGTTGGTGATGTGGAGGGTTTGAAAAATGCGCTTGCTGCTGGTGCTGACAAAGATGAGGAAGATTCCGAAGGAAGGACAGCATTGCATTTTGCTTGCGGATATGGCGAGGCGAAGTGTGCTCAGGTGCTTCTAGAGGCTGGAGCAAAAGTGGATGCCTTAGATAAGAATAAAAACACTGCACTTCATTATGCAGCCGGTTATGGCAGGAAGGAATGTGTGGCCCTTCTATTGGAAAATGGCGCAGCTGTCACACTCGCAAACATGGATGGAAAGACCCCGATTGACGTTGCCAAGCTGAACAACCAAAATGATGTACTTAAGTTGCTCGAGAAGGATGCCTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009941 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0019867 GO:0030941 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031323 GO:0031326 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042170 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051861 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:0097367 GO:0098588 GO:0098805 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4

Protein Analysis

296

Amino Acids

32.26

Weight (kDa)

4.43

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STI1-HOP_DP	PF17830	98 - 142	8.2e-09	STI1/HOP, DP domain
Ank_KRIT1	PF24521	175 - 285	6.4e-06	KRIT1 ankyrin-repeats domain
Ank_2	PF12796	177 - 266	6.9e-19	Ankyrin repeats (3 copies)
Ank	PF00023	205 - 236	1.4e-06	Ankyrin repeat
Ank_4	PF13637	219 - 258	8.1e-08	Ankyrin repeats (many copies)
Ank_5	PF13857	224 - 278	2.9e-09	Ankyrin repeats (many copies)
Ank_2	PF12796	228 - 291	1.1e-10	Ankyrin repeats (3 copies)
Ank	PF00023	237 - 268	1.7e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17390 AT4G35450 AT4G35450 AT4G35450 AT4G35450 AT4G35450
fragaria_vesca	FvH4_2g17270 FvH4_2g17270
malus_domestica	MD05G1151600.v1.1 MD10G1145800.v1.1
prunus_persica	Prupe.8G184200_v2.0.a1
pyrus_communis	pycom05g14610 pycom05g14650 pycom10g12580
rosa_chinensis	RchiOBHm_Chr6g0281771
rosa_laevigata	RLG00000012936
rosa_multiflora	Rmu_ssc0000126.1_g000046
rosa_roxburghii	Rroxscaffold_7G00186810
rosa_rugosa	Rorug06G0143600 Rorug06G0143600
rosa_samantha	Rh6AG256300 Rh6BG259200 Rh6CG258200 Rh6DG250300
rosa_wichuraiana	Rw6G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	8 cut(s)	11, 24, 50, 224, 237, 311, 441, 454
AcuI	CTGAAG	2 cut(s)	71, 477
AfaI	GTAC	2 cut(s)	149, 858
AfiI	CCNNNNNNNGG	2 cut(s)	615, 772
AflII	CTTAAG	1 cut(s)	860
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	67, 101, 328, 565
AhdI	GACNNNNNGTC	1 cut(s)	357
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	5 cut(s)	38, 286, 509, 788, 838
AluI	AGCT	5 cut(s)	38, 286, 509, 788, 838
Alw21I	GWGCWC	2 cut(s)	109, 664
Alw26I	GTCTC	1 cut(s)	344
Alw44I	GTGCAC	1 cut(s)	105
AlwI	GGATC	8 cut(s)	11, 24, 50, 224, 237, 311, 441, 454
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	2 cut(s)	437, 762
ApaLI	GTGCAC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	365, 578, 734, 785
AspLEI	GCGC	3 cut(s)	207, 574, 785
AspS9I	GGNCC	3 cut(s)	359, 437, 763
AsuHPI	GGTGA	2 cut(s)	474, 560
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	109
BamHI	GGATCC	3 cut(s)	16, 229, 446
Bbv12I	GWGCWC	2 cut(s)	109, 664
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	4 cut(s)	352, 565, 746, 797
BccI	CCATC	5 cut(s)	67, 241, 277, 437, 803
BcgI	CGANNNNNNTGC	1 cut(s)	860
BciT130I	CCWGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	35, 674, 889
BfoI	RGCGCY	1 cut(s)	208
BfrI	CTTAAG	1 cut(s)	860
BisI	GCNGC	4 cut(s)	366, 579, 735, 786
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	4 cut(s)	367, 580, 736, 787
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	359
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	359, 437, 763
BmiI	GGNNCC	4 cut(s)	18, 231, 360, 448
BmrFI	CCNGG	1 cut(s)	478
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	5 cut(s)	213, 315, 490, 685, 868
BmuI	ACTGGG	1 cut(s)	363
BpmI	CTGGAG	3 cut(s)	308, 525, 702
Bpu10I	CCTNAGC	2 cut(s)	510, 663
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	195, 208, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 772
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	4 cut(s)	110, 358, 386, 540
Bse3DI	GCAATG	2 cut(s)	426, 623
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	3 cut(s)	195, 208, 476
BseGI	GGATG	5 cut(s)	233, 520, 700, 814, 883
BseLI	CCNNNNNNNGG	2 cut(s)	615, 772
BseMI	GCAATG	2 cut(s)	426, 623
BseMII	CTCAG	5 cut(s)	143, 192, 197, 501, 677
BseNI	ACTGG	4 cut(s)	110, 358, 386, 540
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	352, 565, 746, 797
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	2 cut(s)	439, 764
BsiHKAI	GWGCWC	2 cut(s)	109, 664
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	1 cut(s)	738
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	615, 772
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	439, 764
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	2 cut(s)	109, 664
Bsp143I	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	639
BspANI	GGCC	2 cut(s)	439, 764
BspCNI	CTCAG	5 cut(s)	142, 193, 196, 502, 676
BspLI	GGNNCC	4 cut(s)	18, 231, 360, 448
BspPI	GGATC	8 cut(s)	11, 24, 50, 224, 237, 311, 441, 454
BspTI	CTTAAG	1 cut(s)	860
BsrDI	GCAATG	2 cut(s)	426, 623
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	4 cut(s)	110, 358, 386, 540
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	3 cut(s)	195, 208, 476
BssMI	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
BssNAI	GTATAC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	195
Bst1107I	GTATAC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	860
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	304, 576, 637
BstDEI	CTNAG	6 cut(s)	129, 183, 201, 510, 663, 700
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	480
BstF5I	GGATG	5 cut(s)	233, 520, 700, 814, 883
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	207, 574, 785
BstKTI	GATC	6 cut(s)	19, 58, 232, 283, 319, 449
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
BstMWI	GCNNNNNNNGC	6 cut(s)	292, 500, 578, 584, 645, 659
BstNI	CCWGG	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	476
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	4 cut(s)	352, 565, 746, 797
BstX2I	RGATCY	4 cut(s)	16, 55, 229, 446
BstYI	RGATCY	4 cut(s)	16, 55, 229, 446
BstZ17I	GTATAC	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	439, 764
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	5 cut(s)	233, 520, 700, 814, 883
BtsI	GCAGTG	2 cut(s)	534, 717
BtsIMutI	CAGTG	3 cut(s)	534, 547, 717
Cac8I	GCNNGC	3 cut(s)	304, 576, 637
CfoI	GCGC	3 cut(s)	207, 574, 785
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	3 cut(s)	359, 437, 763
Csp6I	GTAC	2 cut(s)	148, 857
CviAII	CATG	5 cut(s)	160, 196, 238, 370, 805
CviQI	GTAC	2 cut(s)	148, 857
DdeI	CTNAG	6 cut(s)	129, 183, 201, 510, 663, 700
DpnI	GATC	6 cut(s)	18, 57, 231, 282, 318, 448
DpnII	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	71, 477
Eco88I	CYCGRG	1 cut(s)	869
Eco91I	GGTNACC	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	163, 199, 241, 373, 808
FalI	AAGNNNNNCTT	1 cut(s)	866
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	5 cut(s)	159, 195, 237, 369, 804
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	4 cut(s)	366, 579, 735, 786
FokI	GGATG	4 cut(s)	220, 527, 707, 821
Fsp4HI	GCNGC	4 cut(s)	366, 579, 735, 786
FspBI	CTAG	3 cut(s)	35, 674, 889
GlaI	GCGC	3 cut(s)	206, 573, 784
GluI	GCNGC	4 cut(s)	366, 579, 735, 786
GsuI	CTGGAG	3 cut(s)	308, 525, 702
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	439, 764
HapII	CCGG	1 cut(s)	738
HhaI	GCGC	3 cut(s)	207, 574, 785
Hin1II	CATG	5 cut(s)	163, 199, 241, 373, 808
Hin6I	GCGC	3 cut(s)	205, 572, 783
HinP1I	GCGC	3 cut(s)	205, 572, 783
HincII	GTYRAC	2 cut(s)	115, 143
HindII	GTYRAC	2 cut(s)	115, 143
HinfI	GANTC	2 cut(s)	178, 605
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	2 cut(s)	474, 560
Hpy166II	GTNNAC	4 cut(s)	9, 107, 115, 143
Hpy188I	TCNGA	3 cut(s)	90, 457, 610
Hpy188III	TCNNGA	3 cut(s)	465, 674, 871
Hpy8I	GTNNAC	4 cut(s)	9, 107, 115, 143
HpyAV	CCTTC	9 cut(s)	69, 113, 330, 462, 605, 609, 745, 776, 868
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	396, 828
HpyF10VI	GCNNNNNNNGC	6 cut(s)	292, 500, 578, 584, 645, 659
HpyF3I	CTNAG	6 cut(s)	129, 183, 201, 510, 663, 700
HpySE526I	ACGT	2 cut(s)	396, 828
Hsp92II	CATG	5 cut(s)	163, 199, 241, 373, 808
HspAI	GCGC	3 cut(s)	205, 572, 783
Kzo9I	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
LmnI	GCTCC	3 cut(s)	292, 506, 683
Lsp1109I	GCAGC	4 cut(s)	352, 565, 746, 797
LweI	GCATC	5 cut(s)	213, 315, 490, 685, 868
MaeI	CTAG	3 cut(s)	35, 674, 889
MaeII	ACGT	2 cut(s)	396, 828
MaeIII	GTNAC	2 cut(s)	480, 790
MalI	GATC	6 cut(s)	18, 57, 231, 282, 318, 448
MboI	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
MboII	GAAGA	3 cut(s)	353, 509, 614
MflI	RGATCY	4 cut(s)	16, 55, 229, 446
MhlI	GDGCHC	2 cut(s)	109, 664
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	861
MspA1I	CMGCKG	2 cut(s)	286, 788
MspCI	CTTAAG	1 cut(s)	860
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	6 cut(s)	292, 500, 578, 584, 645, 659
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
NlaIII	CATG	5 cut(s)	163, 199, 241, 373, 808
NlaIV	GGNNCC	4 cut(s)	18, 231, 360, 448
NmuCI	GTSAC	2 cut(s)	480, 790
NsiI	ATGCAT	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	869
PfeI	GAWTC	2 cut(s)	178, 605
PkrI	GCNGC	4 cut(s)	367, 580, 736, 787
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	476
PspEI	GGTNACC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	4 cut(s)	18, 231, 360, 448
PspPI	GGNCC	3 cut(s)	359, 437, 763
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	4 cut(s)	16, 55, 229, 446
PvuII	CAGCTG	2 cut(s)	286, 788
RsaI	GTAC	2 cut(s)	149, 858
RsaNI	GTAC	2 cut(s)	148, 857
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	4 cut(s)	366, 579, 735, 786
Sau3AI	GATC	6 cut(s)	16, 55, 229, 280, 316, 446
Sau96I	GGNCC	3 cut(s)	359, 437, 763
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	109, 664
SfaNI	GCATC	5 cut(s)	213, 315, 490, 685, 868
Sfr274I	CTCGAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	869
SmlI	CTYRAG	3 cut(s)	251, 860, 869
SmoI	CTYRAG	3 cut(s)	251, 860, 869
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	3 cut(s)	35, 674, 889
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	399, 831
TaqI	TCGA	1 cut(s)	870
TatI	WGTACW	2 cut(s)	147, 856
TfiI	GAWTC	2 cut(s)	178, 605
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	3 cut(s)	541, 547, 724
TseFI	GTSAC	2 cut(s)	480, 790
TseI	GCWGC	4 cut(s)	365, 578, 734, 785
Tsp45I	GTSAC	2 cut(s)	480, 790
TspDTI	ATGAA	5 cut(s)	51, 254, 518, 531, 716
TspRI	CASTG	3 cut(s)	541, 547, 724
Vha464I	CTTAAG	1 cut(s)	860
VneI	GTGCAC	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	359
XbaI	TCTAGA	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	3 cut(s)	35, 674, 889
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.