Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

7606728 .. 7609278

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGATTCTGGTCGTTGTTGGAGGTGGCTTCTATGCCGGTTATTCAAGTTCTTTTCATGAGTCTTGTGGGAGCTTTCATGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTGAAGCCCGTAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTGCCAATCTAGCTCAGACGGTTACACTTGAAGACATCATCTCATGGTGGTTTATGCCGGTGAACATGGGACTTACATTTCTAATCGGAGGACTTCTTGGGTGGTTGGTTGTTAAGATTTTGAAACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGAACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGACAAAAGTCCTTTTGGTAACCGAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTTTCTACATATGGACATACACATTCCGGCTGATTAAAGGGTCCGCAATGAAAGTTCAAGCCATAGAAGAATCTGAGAAAATAGCAATTAAATCATCCAATAGTGACTTAGAAGCTGATCATAAGACCCATCTCCTCGGTGCACCGGAAGACAAGGAAAACAAAGTGGTAAAGGAAAAGACAGGGTTTTGGAGAAAAGGAGTAGACTTCCTCCATGAGATATTGGAGGAGCTTCTTGCACCACCTACACTTGGTGCAATTATCGGTTTCATTTTCGGTGCAGTAAGATGGCTCAGAAATCTTATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGATGGGACCATTCCCTGTATGACTATTATACTAGGGGGAAACCTCATACAAGGTTTACGTTCTTCGGCAGTCAAACCGATGGTTGTACTTGGAATAGTCTGTGTTCGGTACATAGCTATGCCAATTATCGGTATAGGCATTGTACTAACAGCTGCAAATCTCGGATTTCTTCCAGCTGATCCTTTGTTTCAGTATGTTTTGATGCTTCAGTTCACCCTCCCGCCTGCCATGAATATCGGTACCATGACACAGCTGTACAATGTTGCTCAAGACGAATGCTCAGTGCTCATGCTTTGGACCTACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

396

Amino Acids

43.39

Weight (kDa)

6.44

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 387	6.5e-102	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1067
AccB1I	GGYRCC	1 cut(s)	1067
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	2 cut(s)	446, 1139
AciI	CCGC	2 cut(s)	513, 1049
AclWI	GGATC	1 cut(s)	1001
AcuI	CTGAAG	1 cut(s)	1019
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	7 cut(s)	147, 804, 915, 938, 972, 1069, 1085
AfiI	CCNNNNNNNGG	2 cut(s)	719, 956
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	6 cut(s)	47, 113, 200, 292, 311, 527
AluBI	AGCT	9 cut(s)	74, 100, 182, 584, 700, 944, 980, 1004, 1081
AluI	AGCT	9 cut(s)	74, 100, 182, 584, 700, 944, 980, 1004, 1081
Alw21I	GWGCWC	2 cut(s)	613, 1116
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	1 cut(s)	1001
AoxI	GGCC	2 cut(s)	81, 1146
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	980
Asp718I	GGTACC	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	5 cut(s)	510, 834, 1125, 1147, 1161
AsuHPI	GGTGA	3 cut(s)	241, 791, 1033
AvaII	GGWCC	4 cut(s)	510, 834, 1125, 1161
BaeGI	GKGCMC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	1067
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	2 cut(s)	207, 624
Bbv12I	GWGCWC	2 cut(s)	613, 1116
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	5 cut(s)	606, 750, 824, 901, 1175
BclI	TGATCA	1 cut(s)	586
BfaI	CTAG	3 cut(s)	179, 464, 860
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	464
BisI	GCNGC	1 cut(s)	981
BlsI	GCNGC	1 cut(s)	982
Bme18I	GGWCC	4 cut(s)	510, 834, 1125, 1161
BmgT120I	GGNCC	5 cut(s)	510, 834, 1125, 1147, 1161
BmiI	GGNNCC	4 cut(s)	353, 511, 835, 1069
BmsI	GCATC	2 cut(s)	775, 1020
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	207, 624
BpuEI	CTTGAG	1 cut(s)	1080
BsaJI	CCNNGG	2 cut(s)	456, 604
BsaWI	WCCGGW	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 956
Bse118I	RCCGGY	3 cut(s)	37, 157, 226
Bse1I	ACTGG	1 cut(s)	1149
Bse3DI	GCAATG	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	456, 604
BseGI	GGATG	1 cut(s)	563
BseLI	CCNNNNNNNGG	2 cut(s)	719, 956
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	4 cut(s)	197, 534, 775, 1122
BseNI	ACTGG	1 cut(s)	1149
BseRI	GAGGAG	2 cut(s)	593, 710
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	1 cut(s)	967
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	2 cut(s)	446, 1139
BshFI	GGCC	2 cut(s)	83, 1148
BshNI	GGYRCC	1 cut(s)	1067
BsiHKAI	GWGCWC	2 cut(s)	613, 1116
BsiSI	CCGG	5 cut(s)	38, 158, 227, 496, 614
BslFI	GGGAC	3 cut(s)	252, 356, 847
BslI	CCNNNNNNNGG	2 cut(s)	719, 956
BsmFI	GGGAC	3 cut(s)	252, 356, 847
BsmI	GAATGC	1 cut(s)	1109
BsnI	GGCC	2 cut(s)	83, 1148
Bsp1286I	GDGCHC	3 cut(s)	438, 613, 1116
Bsp1407I	TGTACA	1 cut(s)	1083
Bsp143I	GATC	3 cut(s)	88, 586, 1006
Bsp19I	CCATGG	1 cut(s)	456
Bsp68I	TCGCGA	1 cut(s)	1139
BspACI	CCGC	2 cut(s)	513, 1049
BspANI	GGCC	2 cut(s)	83, 1148
BspCNI	CTCAG	4 cut(s)	196, 535, 774, 1121
BspFNI	CGCG	2 cut(s)	446, 1139
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	353, 511, 835, 1069
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	1001
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	1067
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	3 cut(s)	37, 157, 226
BsrGI	TGTACA	1 cut(s)	1083
BsrI	ACTGG	1 cut(s)	1149
BssAI	RCCGGY	3 cut(s)	37, 157, 226
BssECI	CCNNGG	2 cut(s)	456, 604
BssMI	GATC	3 cut(s)	88, 586, 1006
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	190, 430, 1156
Bst6I	CTCTTC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	1083
BstC8I	GCNNGC	2 cut(s)	98, 1053
BstDEI	CTNAG	5 cut(s)	183, 543, 577, 761, 1108
BstDSI	CCRYGG	1 cut(s)	456
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	563
BstFNI	CGCG	2 cut(s)	446, 1139
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	3 cut(s)	91, 589, 1009
BstMBI	GATC	3 cut(s)	88, 586, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 179, 1145
BstPAI	GACNNNNGTC	1 cut(s)	396
BstPI	GGTNACC	1 cut(s)	407
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	613
BstUI	CGCG	2 cut(s)	446, 1139
BstV1I	GCAGC	1 cut(s)	967
BstV2I	GAAGAC	2 cut(s)	207, 624
BsuRI	GGCC	2 cut(s)	83, 1148
BtgI	CCRYGG	1 cut(s)	456
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	563
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	810, 1116, 1152
BtuMI	TCGCGA	1 cut(s)	1139
Cac8I	GCNNGC	2 cut(s)	98, 1053
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	3 cut(s)	37, 157, 226
Cfr13I	GGNCC	5 cut(s)	510, 834, 1125, 1147, 1161
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	7 cut(s)	146, 803, 914, 937, 971, 1068, 1084
CviQI	GTAC	7 cut(s)	146, 803, 914, 937, 971, 1068, 1084
DdeI	CTNAG	5 cut(s)	183, 543, 577, 761, 1108
DpnI	GATC	3 cut(s)	90, 588, 1008
DpnII	GATC	3 cut(s)	88, 586, 1006
DraIII	CACNNNGTG	1 cut(s)	722
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	4 cut(s)	510, 834, 1125, 1161
Eco57I	CTGAAG	1 cut(s)	1019
Eco91I	GGTNACC	1 cut(s)	407
EcoO65I	GGTNACC	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	456
FaqI	GGGAC	3 cut(s)	252, 356, 847
FauI	CCCGC	1 cut(s)	1056
FauNDI	CATATG	1 cut(s)	479
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	981
FokI	GGATG	1 cut(s)	550
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	981
FspBI	CTAG	3 cut(s)	179, 464, 860
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	1 cut(s)	981
GsaI	CCCAGC	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	83, 1148
HapII	CCGG	5 cut(s)	38, 158, 227, 496, 614
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	1 cut(s)	463
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	3 cut(s)	6, 61, 539
HpaII	CCGG	5 cut(s)	38, 158, 227, 496, 614
HphI	GGTGA	3 cut(s)	241, 791, 1033
Hpy166II	GTNNAC	6 cut(s)	232, 611, 673, 884, 1041, 1164
Hpy188I	TCNGA	6 cut(s)	88, 186, 257, 544, 764, 992
Hpy188III	TCNNGA	4 cut(s)	58, 308, 1097, 1138
Hpy8I	GTNNAC	6 cut(s)	232, 611, 673, 884, 1041, 1164
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	305, 1184
HpyCH4III	ACNGT	3 cut(s)	190, 430, 1156
HpyCH4IV	ACGT	1 cut(s)	886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 179, 1145
HpyF3I	CTNAG	5 cut(s)	183, 543, 577, 761, 1108
HpySE526I	ACGT	1 cut(s)	886
HspAI	GCGC	1 cut(s)	461
KpnI	GGTACC	1 cut(s)	1071
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	3 cut(s)	88, 586, 1006
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	71, 697, 793
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	2 cut(s)	775, 1020
MaeI	CTAG	3 cut(s)	179, 464, 860
MaeII	ACGT	1 cut(s)	886
MaeIII	GTNAC	3 cut(s)	190, 407, 572
MalI	GATC	3 cut(s)	90, 588, 1008
MboI	GATC	3 cut(s)	88, 586, 1006
MboII	GAAGA	7 cut(s)	94, 212, 548, 629, 882, 989, 1162
MhlI	GDGCHC	3 cut(s)	438, 613, 1116
MluCI	AATT	4 cut(s)	121, 555, 726, 951
MluI	ACGCGT	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	70
MseI	TTAA	3 cut(s)	282, 504, 558
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	3 cut(s)	980, 1004, 1081
MspI	CCGG	5 cut(s)	38, 158, 227, 496, 614
Mva1269I	GAATGC	1 cut(s)	1109
MvnI	CGCG	2 cut(s)	446, 1139
MwoI	GCNNNNNNNGC	3 cut(s)	80, 179, 1145
NcoI	CCATGG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	479
NdeII	GATC	3 cut(s)	88, 586, 1006
NlaIV	GGNNCC	4 cut(s)	353, 511, 835, 1069
NmuCI	GTSAC	1 cut(s)	572
NruI	TCGCGA	1 cut(s)	1139
PagI	TCATGA	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1109
PfeI	GAWTC	2 cut(s)	6, 539
PkrI	GCNGC	1 cut(s)	982
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PshAI	GACNNNNGTC	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	373
PspN4I	GGNNCC	4 cut(s)	353, 511, 835, 1069
PspPI	GGNCC	5 cut(s)	510, 834, 1125, 1147, 1161
PstI	CTGCAG	1 cut(s)	340
PvuII	CAGCTG	3 cut(s)	980, 1004, 1081
RruI	TCGCGA	1 cut(s)	1139
RsaI	GTAC	7 cut(s)	147, 804, 915, 938, 972, 1069, 1085
RsaNI	GTAC	7 cut(s)	146, 803, 914, 937, 971, 1068, 1084
RseI	CAYNNNNRTG	1 cut(s)	944
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	282, 504, 558
SatI	GCNGC	1 cut(s)	981
Sau3AI	GATC	3 cut(s)	88, 586, 1006
Sau96I	GGNCC	5 cut(s)	510, 834, 1125, 1147, 1161
SchI	GAGTC	1 cut(s)	70
SduI	GDGCHC	3 cut(s)	438, 613, 1116
SfaNI	GCATC	2 cut(s)	775, 1020
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	4 cut(s)	510, 834, 1125, 1161
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	1095
SmoI	CTYRAG	1 cut(s)	1095
Sse9I	AATT	4 cut(s)	121, 555, 726, 951
SsiI	CCGC	2 cut(s)	513, 1049
SspMI	CTAG	3 cut(s)	179, 464, 860
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	190, 430, 1156
TaiI	ACGT	1 cut(s)	889
TasI	AATT	4 cut(s)	121, 555, 726, 951
TatI	WGTACW	5 cut(s)	145, 802, 913, 970, 1083
TfiI	GAWTC	2 cut(s)	6, 539
Tru1I	TTAA	3 cut(s)	282, 504, 558
Tru9I	TTAA	3 cut(s)	282, 504, 558
TscAI	CASTG	3 cut(s)	817, 1116, 1159
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	1 cut(s)	980
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	6 cut(s)	46, 67, 143, 533, 727, 1073
TspRI	CASTG	3 cut(s)	817, 1116, 1159
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	4 cut(s)	510, 834, 1125, 1161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	3 cut(s)	179, 464, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.