Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003770

Physical Location & Seq

Genomic Coordinates Forward (+)

9815296 .. 9819658

Gene Structure 4363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGTTTCTGGACTCTGCTTGAGGTGGCATCTATGCCAGTTCTGCAAGTTTTGATCATCAGTCTGTTGGGAGCTTACCTGTCTACTGAGTATTGCAATCTTCTTCCTTCAGGCGCCAGAAGATCCTTGAATAGGATAGTGTTTGTGGTGTTTACACCCTCCCTCATGTTTGCAAGTGTTGCTAAAACTGTCACATTTGATGACATCATTTCATGGTGGTTTATGATTGTCAATGTGGGACTTACATTTTTGTTTGGAACCATTCTTGGATGGTTAGTGGTAAAGATACTGAAACCAAAGCCTTATCAGGAAGGCCTTGTAATTGCTACATGTTCATCAGCAAACTTGGGAAACCTTCTACTTATAGTTGTTCCAGCAATTTGTCATGAGGATGGGAACCCTTTCGGCGATCATGAAGTTTGTAGCGCAGTTGGACTCTCCTATGTCTCGTTTTCCATGGCGCTTGGTGGTTTCTTCATTTGGACTTATACTTATCAGCTGATAAAGTCCTCATCTGTGAAATTTATAGCGCTTCAAGAAGCAGAAAATGAGACCGCGAAGAGGCCAAACAAGGATTTAGATGCTGATGGAGCAACTCACCTTCTCAAAGGAGGAGATGAGGAGCAGGGCTCTATTGTAGTCTCATCTAAATCTGCGGATCACCCCCCTGCTATAGTACCTCACGAACCAGATGTATCATTCCCCCAAAAAGTATTAGCGTTCTTTAAACAGATTTTACATGAGTTACTGGCACCACCAACTCTAGCTGCATTTATTGGATTTGTCTTTGGGGCAATTCCATGGCTTAAACGCTTGATAATTGGTGACTCCGCCCCCCTCCGAGTGATCCAAGATTCAATTGCACAACTTGGGAATGGAACTATTCCTTGTATCACACTTATTCTTGGAGGCAATCTCATCCAAGGCTTACGAGCATCGACAATCAAAATACCTGTCATCCTTGGAATCATCGTTGCACGATATATTCTACTTCCAGTAATTGGTATTTGGATTGTAAAAGGAGCAGACCAACTAGGGTTTCTCCCACCAGACCCTTTGTTCAAGTTTGTGCTGATGGTTCAATTCACATTGCCACCTGCCATGAACATTGGTACCATAACCCAGCTGTTTGATGTCGCCGAGGCAGAGTGCTCGGTTATCTTCCTGTGGACATACTTGGTCTGTGCCCTAGCACTTACCGTGTGGTCTACAGTCTACATGTGGATCTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

411

Amino Acids

44.87

Weight (kDa)

5.69

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 402	8.8e-87	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17500 AT2G17500 AT2G17500 AT2G17500 AT5G65980 AT5G65980
fragaria_vesca	FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180 FvH4_1g10180
malus_domestica	MD02G1113800.v1.1 MD15G1228900.v1.1
prunus_persica	Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1 Prupe.7G185200_v2.0.a1
pyrus_communis	pycom15g20410
rosa_chinensis	RchiOBHm_Chr2g0096951
rosa_laevigata	RLG00000016686
rosa_multiflora	Rmu_sc0001651.1_g000007
rosa_roxburghii	Rroxscaffold_2G00145130
rosa_rugosa	Rorug02G0062100 Rorug02G0062100 Rorug02G0062200 Rorug02G0062300
rosa_samantha	Rh2AG110200 Rh2BG112000 Rh2CG114100 Rh2DG113200
rosa_wichuraiana	Rw2G008520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1105
Acc36I	ACCTGC	1 cut(s)	1105
Acc65I	GGTACC	1 cut(s)	1112
AccB1I	GGYRCC	3 cut(s)	113, 751, 1112
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccI	GTMKAC	3 cut(s)	83, 1208, 1215
AccII	CGCG	1 cut(s)	557
AciI	CCGC	3 cut(s)	555, 656, 831
AclWI	GGATC	4 cut(s)	117, 666, 841, 1232
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	678, 1114
AfeI	AGCGCT	1 cut(s)	531
AfiI	CCNNNNNNNGG	3 cut(s)	132, 561, 1001
AflIII	ACRYGT	2 cut(s)	329, 1218
AgsI	TTSAA	5 cut(s)	130, 536, 858, 1063, 1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	1023, 1055
AluBI	AGCT	4 cut(s)	74, 499, 767, 1126
AluI	AGCT	4 cut(s)	74, 499, 767, 1126
Alw21I	GWGCWC	1 cut(s)	1154
Alw26I	GTCTC	3 cut(s)	451, 545, 646
AlwI	GGATC	4 cut(s)	117, 666, 841, 1232
Aor51HI	AGCGCT	1 cut(s)	531
AoxI	GGCC	2 cut(s)	313, 563
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	939, 971
Asp700I	GAANNNNTTC	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	1112
AspLEI	GCGC	4 cut(s)	116, 428, 463, 532
AsuHPI	GGTGA	3 cut(s)	590, 653, 836
BaeGI	GKGCMC	1 cut(s)	1189
BaeI	ACNNNNGTAYC	2 cut(s)	1096, 1129
BanI	GGYRCC	3 cut(s)	113, 751, 1112
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	1154
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	4 cut(s)	264, 386, 581, 1069
BcgI	CGANNNNNNTGC	2 cut(s)	1134, 1168
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	3 cut(s)	451, 545, 646
BfaI	CTAG	3 cut(s)	764, 1034, 1190
BfmI	CTRYAG	2 cut(s)	672, 1209
BfoI	RGCGCY	3 cut(s)	117, 464, 533
BfuAI	ACCTGC	1 cut(s)	1105
BisI	GCNGC	1 cut(s)	768
BlsI	GCNGC	1 cut(s)	769
BmiI	GGNNCC	5 cut(s)	115, 259, 398, 753, 1114
BmsI	GCATC	3 cut(s)	38, 571, 944
BplI	GAGNNNNNCTC	4 cut(s)	614, 646, 900, 932
BpuEI	CTTGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	456, 800, 922, 961, 1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 561, 1001
Bse1I	ACTGG	3 cut(s)	38, 753, 995
Bse3DI	GCAATG	1 cut(s)	1088
BseDI	CCNNGG	5 cut(s)	456, 800, 922, 961, 1140
BseGI	GGATG	4 cut(s)	275, 397, 918, 957
BseLI	CCNNNNNNNGG	3 cut(s)	132, 561, 1001
BseMI	GCAATG	1 cut(s)	1088
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	38, 753, 995
BseRI	GAGGAG	2 cut(s)	627, 635
BseSI	GKGCMC	1 cut(s)	1189
BseXI	GCAGC	1 cut(s)	754
BseYI	CCCAGC	1 cut(s)	1122
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	2 cut(s)	315, 565
BshNI	GGYRCC	3 cut(s)	113, 751, 1112
BsiHKAI	GWGCWC	1 cut(s)	1154
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	132, 561, 1001
BsmAI	GTCTC	3 cut(s)	451, 545, 646
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	315, 565
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	632, 1154, 1189
Bsp143I	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
Bsp19I	CCATGG	2 cut(s)	456, 800
BspACI	CCGC	3 cut(s)	555, 656, 831
BspANI	GGCC	2 cut(s)	315, 565
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	557
BspHI	TCATGA	2 cut(s)	385, 412
BspLI	GGNNCC	5 cut(s)	115, 259, 398, 753, 1114
BspMI	ACCTGC	1 cut(s)	1105
BspPI	GGATC	4 cut(s)	117, 666, 841, 1232
BspT107I	GGYRCC	3 cut(s)	113, 751, 1112
BspTNI	GGTCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	1088
BsrI	ACTGG	3 cut(s)	38, 753, 995
BssECI	CCNNGG	5 cut(s)	456, 800, 922, 961, 1140
BssMI	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	4 cut(s)	456, 800, 922, 961
Bst4CI	ACNGT	3 cut(s)	190, 1201, 1213
Bst6I	CTCTTC	1 cut(s)	554
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	2 cut(s)	456, 800
BstENI	CCTNNNNNAGG	1 cut(s)	130
BstF5I	GGATG	4 cut(s)	275, 397, 918, 957
BstFNI	CGCG	1 cut(s)	557
BstH2I	RGCGCY	3 cut(s)	117, 464, 533
BstHHI	GCGC	4 cut(s)	116, 428, 463, 532
BstKTI	GATC	6 cut(s)	57, 125, 412, 661, 849, 1227
BstMAI	GTCTC	3 cut(s)	451, 545, 646
BstMBI	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
BstNSI	RCATGY	2 cut(s)	333, 1222
BstSFI	CTRYAG	2 cut(s)	672, 1209
BstSLI	GKGCMC	1 cut(s)	1189
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	754
BstX2I	RGATCY	2 cut(s)	122, 1224
BstYI	RGATCY	2 cut(s)	122, 1224
BsuRI	GGCC	2 cut(s)	315, 565
BtgI	CCRYGG	2 cut(s)	456, 800
BtsCI	GGATG	4 cut(s)	275, 397, 918, 957
BveI	ACCTGC	1 cut(s)	1105
CciI	TCATGA	2 cut(s)	385, 412
CfoI	GCGC	4 cut(s)	116, 428, 463, 532
Csp6I	GTAC	2 cut(s)	677, 1113
CviQI	GTAC	2 cut(s)	677, 1113
DdeI	CTNAG	1 cut(s)	87
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	6 cut(s)	56, 124, 411, 660, 848, 1226
DpnII	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
DraI	TTTAAA	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	820
Eco130I	CCWWGG	4 cut(s)	456, 800, 922, 961
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	531
Eco57I	CTGAAG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	130
EcoT14I	CCWWGG	4 cut(s)	456, 800, 922, 961
EcoT38I	GRGCYC	1 cut(s)	632
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	4 cut(s)	456, 800, 922, 961
FaqI	GGGAC	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	3 cut(s)	83, 1208, 1215
Fnu4HI	GCNGC	1 cut(s)	768
FokI	GGATG	4 cut(s)	282, 404, 905, 944
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	1 cut(s)	768
FspBI	CTAG	3 cut(s)	764, 1034, 1190
GlaI	GCGC	4 cut(s)	115, 427, 462, 531
GluI	GCNGC	1 cut(s)	768
GsaI	CCCAGC	1 cut(s)	1126
HaeII	RGCGCY	3 cut(s)	117, 464, 533
HaeIII	GGCC	2 cut(s)	315, 565
HhaI	GCGC	4 cut(s)	116, 428, 463, 532
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	4 cut(s)	114, 426, 461, 530
HinP1I	GCGC	4 cut(s)	114, 426, 461, 530
HinfI	GANTC	5 cut(s)	13, 435, 827, 854, 966
HphI	GGTGA	3 cut(s)	590, 653, 836
Hpy166II	GTNNAC	5 cut(s)	84, 153, 1170, 1209, 1216
Hpy188I	TCNGA	1 cut(s)	842
Hpy188III	TCNNGA	7 cut(s)	10, 308, 386, 413, 536, 683, 1233
Hpy8I	GTNNAC	5 cut(s)	84, 153, 1170, 1209, 1216
HpyAV	CCTTC	4 cut(s)	117, 305, 365, 611
HpyCH4III	ACNGT	3 cut(s)	190, 1201, 1213
HpyCH4V	TGCA	6 cut(s)	46, 96, 173, 770, 863, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
HpyF3I	CTNAG	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	4 cut(s)	114, 426, 461, 530
KasI	GGCGCC	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	1116
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
LmnI	GCTCC	4 cut(s)	71, 590, 622, 1022
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	3 cut(s)	38, 571, 944
MaeI	CTAG	3 cut(s)	764, 1034, 1190
MaeIII	GTNAC	3 cut(s)	190, 744, 824
MalI	GATC	6 cut(s)	56, 124, 411, 660, 848, 1226
MboI	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
MboII	GAAGA	6 cut(s)	92, 95, 132, 466, 571, 1153
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	2 cut(s)	122, 1224
MhlI	GDGCHC	3 cut(s)	632, 1154, 1189
MluCI	AATT	8 cut(s)	321, 378, 521, 795, 819, 858, 999, 1082
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	7, 429, 821
MmeI	TCCRAC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	2 cut(s)	726, 807
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	499, 1126
MunI	CAATTG	1 cut(s)	858
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	43, 179, 590
NarI	GGCGCC	1 cut(s)	114
NcoI	CCATGG	2 cut(s)	456, 800
NdeII	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
NlaIV	GGNNCC	5 cut(s)	115, 259, 398, 753, 1114
NmeAIII	GCCGAG	1 cut(s)	1165
NmuCI	GTSAC	2 cut(s)	190, 824
NspI	RCATGY	2 cut(s)	333, 1222
PagI	TCATGA	2 cut(s)	385, 412
PaqCI	CACCTGC	1 cut(s)	1105
PceI	AGGCCT	1 cut(s)	315
PciI	ACATGT	2 cut(s)	329, 1218
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	854, 966
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	1 cut(s)	769
PleI	GAGTC	3 cut(s)	7, 429, 821
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	3 cut(s)	7, 429, 821
PscI	ACATGT	2 cut(s)	329, 1218
PspFI	CCCAGC	1 cut(s)	1122
PspN4I	GGNNCC	5 cut(s)	115, 259, 398, 753, 1114
PsuI	RGATCY	2 cut(s)	122, 1224
PvuII	CAGCTG	2 cut(s)	499, 1126
RsaI	GTAC	2 cut(s)	678, 1114
RsaNI	GTAC	2 cut(s)	677, 1113
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	726, 807
SatI	GCNGC	1 cut(s)	768
Sau3AI	GATC	6 cut(s)	54, 122, 409, 658, 846, 1224
SchI	GAGTC	3 cut(s)	7, 429, 821
SduI	GDGCHC	3 cut(s)	632, 1154, 1189
SfaNI	GCATC	3 cut(s)	38, 571, 944
SfcI	CTRYAG	2 cut(s)	672, 1209
SfoI	GGCGCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	8 cut(s)	321, 378, 521, 795, 819, 858, 999, 1082
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	555, 656, 831
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	3 cut(s)	764, 1034, 1190
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	4 cut(s)	456, 800, 922, 961
TaaI	ACNGT	3 cut(s)	190, 1201, 1213
TaqI	TCGA	1 cut(s)	938
TasI	AATT	8 cut(s)	321, 378, 521, 795, 819, 858, 999, 1082
TfiI	GAWTC	2 cut(s)	854, 966
Tru1I	TTAA	2 cut(s)	726, 807
Tru9I	TTAA	2 cut(s)	726, 807
TseFI	GTSAC	2 cut(s)	190, 824
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	190, 824
TspDTI	ATGAA	5 cut(s)	201, 324, 429, 466, 1118
Van91I	CCANNNNNTGG	1 cut(s)	1001
XagI	CCTNNNNNAGG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	2 cut(s)	333, 1222
XmiI	GTMKAC	3 cut(s)	83, 1208, 1215
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	3 cut(s)	764, 1034, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.