Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Reverse (-)

4842385 .. 4845836

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGATAACGGAATCAACAACGGTGCTGAAGCCATAACAGTCTCGGCTCTCAATTGTATTGATCTCTCAAGCACAGATACTCACCAATCCGTCTCTCTACTCAAACAGGCCTGTTTGGATTGCGGTTTCTTCTACGTGGTAAATCATGGAATAACCGAGCAATTCATGGACGAGGTGTTTTCACAGAGCAGGAGGATGTTCAGTTTACCGTTGAGTGAAAAAATGAAGCTTTTGAGGAACAAGAAGCACAGGGGATATACCCCTCTTCTTGATGAGCATCTGGACCATGAAAACCAAGTTCATGTAGGAGATTACAAGGAGGGGTATTACATAGGAGTTGAGGTAGCTGAAGACGACCCAAAAGCGGAAAAGCCATTTTATGGTCCTAATGTTTGGCCTGCACCAGATATCTTGCCTGGGTGGAGGGAGACCATGGAAGAATTTCATAGACAAGCCTTAGAGGTGGCTAAAGCAGTTGCTAGGCTCATTGCCCTTGCTCTTGACCTTGATGTTCATTTCTTTGATAAGCAAGAAATGCTTGGTGAGGCTATTGCGACGTTGCGCTTACTACACTATGAAGGAAAAATATCTGATCCATCAAATGGAATTTTCGGAGCTGGAGCGCATTCTGACTTCGGTCTCATTACCCTTTTGGCAACTGATGATGTCTTAGGTCTCCAAATATGCAAGGATAAGGATGCCAAACCTCAGTTGTGGGAATACGTAGCACCGGTTAAAGGAGCATTTATAGTGAATCTTGGTGACATGCTGGAACGCTGGAGTAACTGTATTTTCAAGTCCACATTGCATAGAGTTGTAGGGAACGGTCGAGAGAGATACTCTATTGCATACTTTATAGAACCTAGTCATGATTGTCTTGTCGAGTGCTTGCCTTCCTGCAAGTCAGAAAATAACCCTCCCAAGTTTCCTCCAATCTTGTGTCAAACTTACCTGAGCCAGCGCTATAGTGATACTCATGCTGATCTGACTACCTACGGAGAAAATAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009914 GO:0009966 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010252 GO:0010311 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022622 GO:0022857 GO:0023051 GO:0031984 GO:0032501 GO:0032502 GO:0040008 GO:0040009 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0080161 GO:0090696 GO:0090697 GO:0090698 GO:0098827 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

337

Amino Acids

37.97

Weight (kDa)

5.3

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	18 - 134	7.7e-35	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	190 - 288	6.9e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	380, 602
AciI	CCGC	2 cut(s)	123, 365
AclWI	GGATC	1 cut(s)	587
AcsI	RAATTY	2 cut(s)	440, 606
AcuI	CTGAAG	2 cut(s)	48, 369
AfeI	AGCGCT	1 cut(s)	962
AfiI	CCNNNNNNNGG	4 cut(s)	364, 380, 602, 737
AgeI	ACCGGT	1 cut(s)	730
AgsI	TTSAA	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	3 cut(s)	229, 347, 617
AluI	AGCT	3 cut(s)	229, 347, 617
Alw26I	GTCTC	5 cut(s)	46, 97, 422, 644, 680
AlwI	GGATC	1 cut(s)	587
Aor51HI	AGCGCT	1 cut(s)	962
AoxI	GGCC	2 cut(s)	108, 395
ApoI	RAATTY	2 cut(s)	440, 606
AsiGI	ACCGGT	1 cut(s)	730
Asp700I	GAANNNNTTC	1 cut(s)	441
AspLEI	GCGC	3 cut(s)	564, 625, 963
AspS9I	GGNCC	2 cut(s)	283, 383
AsuHPI	GGTGA	3 cut(s)	74, 554, 773
AvaII	GGWCC	2 cut(s)	283, 383
BbsI	GAAGAC	1 cut(s)	357
BccI	CCATC	1 cut(s)	604
BciT130I	CCWGG	1 cut(s)	417
BcoDI	GTCTC	5 cut(s)	46, 97, 422, 644, 680
BfaI	CTAG	2 cut(s)	480, 864
BfmI	CTRYAG	1 cut(s)	964
BfoI	RGCGCY	1 cut(s)	964
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	2 cut(s)	283, 383
BmgT120I	GGNCC	2 cut(s)	283, 383
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	286, 688
BoxI	GACNNNNGTC	1 cut(s)	636
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	824, 856
BpmI	CTGGAG	2 cut(s)	639, 799
Bpu10I	CCTNAGC	1 cut(s)	953
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	2 cut(s)	136, 724
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	3 cut(s)	422, 644, 680
BsaJI	CCNNGG	2 cut(s)	416, 432
BsaWI	WCCGGW	1 cut(s)	730
BsaXI	ACNNNNNCTCC	4 cut(s)	327, 357, 772, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 380, 602, 737
Bse118I	RCCGGY	1 cut(s)	730
Bse3DI	GCAATG	2 cut(s)	486, 803
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	416, 432
BseGI	GGATG	2 cut(s)	201, 703
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	364, 380, 602, 737
BseMI	GCAATG	2 cut(s)	486, 803
BseMII	CTCAG	2 cut(s)	722, 944
BsgI	GTGCAG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	829
BshFI	GGCC	2 cut(s)	110, 397
BshTI	ACCGGT	1 cut(s)	730
BsiEI	CGRYCG	1 cut(s)	829
BsiSI	CCGG	1 cut(s)	731
BslI	CCNNNNNNNGG	4 cut(s)	364, 380, 602, 737
BsmAI	GTCTC	5 cut(s)	46, 97, 422, 644, 680
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	110, 397
Bso31I	GGTCTC	3 cut(s)	422, 644, 680
Bsp143I	GATC	3 cut(s)	61, 592, 982
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	2 cut(s)	123, 365
BspANI	GGCC	2 cut(s)	110, 397
BspCNI	CTCAG	2 cut(s)	721, 945
BspHI	TCATGA	1 cut(s)	868
BspPI	GGATC	1 cut(s)	587
BspTNI	GGTCTC	3 cut(s)	422, 644, 680
BsrDI	GCAATG	2 cut(s)	486, 803
BsrFI	RCCGGY	1 cut(s)	730
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	2 cut(s)	416, 432
BssMI	GATC	3 cut(s)	61, 592, 982
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	5 cut(s)	23, 40, 210, 788, 827
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstBAI	YACGTR	2 cut(s)	136, 724
BstC8I	GCNNGC	3 cut(s)	399, 890, 959
BstDEI	CTNAG	4 cut(s)	457, 670, 708, 953
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	201, 703
BstH2I	RGCGCY	1 cut(s)	964
BstHHI	GCGC	3 cut(s)	564, 625, 963
BstKTI	GATC	3 cut(s)	64, 595, 985
BstMAI	GTCTC	5 cut(s)	46, 97, 422, 644, 680
BstMBI	GATC	3 cut(s)	61, 592, 982
BstMCI	CGRYCG	1 cut(s)	829
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	769
BstPAI	GACNNNNGTC	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	964
BstSNI	TACGTA	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	110, 397
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	201, 703
Cac8I	GCNNGC	3 cut(s)	399, 890, 959
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	3 cut(s)	564, 625, 963
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	2 cut(s)	283, 383
CspAI	ACCGGT	1 cut(s)	730
CviAII	CATG	8 cut(s)	146, 166, 287, 302, 433, 766, 869, 977
DdeI	CTNAG	4 cut(s)	457, 670, 708, 953
DpnI	GATC	3 cut(s)	63, 594, 984
DpnII	GATC	3 cut(s)	61, 592, 982
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	724
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	110
Eco31I	GGTCTC	3 cut(s)	422, 644, 680
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	283, 383
Eco47III	AGCGCT	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	48, 369
EcoRII	CCWGG	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	8 cut(s)	149, 169, 290, 305, 436, 769, 872, 980
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FatI	CATG	8 cut(s)	145, 165, 286, 301, 432, 765, 868, 976
FokI	GGATG	2 cut(s)	208, 710
FspBI	CTAG	2 cut(s)	480, 864
GlaI	GCGC	3 cut(s)	563, 624, 962
GsuI	CTGGAG	2 cut(s)	639, 799
HaeII	RGCGCY	1 cut(s)	964
HaeIII	GGCC	2 cut(s)	110, 397
HapII	CCGG	1 cut(s)	731
HhaI	GCGC	3 cut(s)	564, 625, 963
Hin1II	CATG	8 cut(s)	149, 169, 290, 305, 436, 769, 872, 980
Hin6I	GCGC	3 cut(s)	562, 623, 961
HinP1I	GCGC	3 cut(s)	562, 623, 961
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	12, 754
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	3 cut(s)	74, 554, 773
Hpy166II	GTNNAC	2 cut(s)	206, 801
Hpy188I	TCNGA	5 cut(s)	592, 614, 631, 907, 987
Hpy188III	TCNNGA	5 cut(s)	269, 281, 500, 830, 869
Hpy8I	GTNNAC	2 cut(s)	206, 801
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	572, 903
HpyCH4III	ACNGT	5 cut(s)	23, 40, 210, 788, 827
HpyCH4IV	ACGT	3 cut(s)	135, 557, 723
HpyCH4V	TGCA	5 cut(s)	401, 687, 808, 848, 900
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	4 cut(s)	457, 670, 708, 953
HpySE526I	ACGT	3 cut(s)	135, 557, 723
Hsp92II	CATG	8 cut(s)	149, 169, 290, 305, 436, 769, 872, 980
HspAI	GCGC	3 cut(s)	562, 623, 961
Kzo9I	GATC	3 cut(s)	61, 592, 982
LmnI	GCTCC	3 cut(s)	614, 620, 740
LweI	GCATC	2 cut(s)	286, 688
MaeI	CTAG	2 cut(s)	480, 864
MaeII	ACGT	3 cut(s)	135, 557, 723
MaeIII	GTNAC	2 cut(s)	761, 782
MalI	GATC	3 cut(s)	63, 594, 984
MboI	GATC	3 cut(s)	61, 592, 982
MboII	GAAGA	4 cut(s)	121, 257, 362, 449
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	4 cut(s)	52, 161, 440, 606
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	735
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	535
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	3 cut(s)	61, 592, 982
NlaIII	CATG	8 cut(s)	149, 169, 290, 305, 436, 769, 872, 980
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	1 cut(s)	769
PagI	TCATGA	1 cut(s)	868
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	12, 754
PflMI	CCANNNNNTGG	2 cut(s)	380, 602
PinAI	ACCGGT	1 cut(s)	730
Ppu21I	YACGTR	2 cut(s)	136, 724
PshAI	GACNNNNGTC	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	283, 383
SaqAI	TTAA	1 cut(s)	735
Sau3AI	GATC	3 cut(s)	61, 592, 982
Sau96I	GGNCC	2 cut(s)	283, 383
ScrFI	CCNGG	1 cut(s)	417
SfaNI	GCATC	2 cut(s)	286, 688
SfcI	CTRYAG	1 cut(s)	964
SinI	GGWCC	2 cut(s)	283, 383
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	724
Sse9I	AATT	4 cut(s)	52, 161, 440, 606
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	123, 365
SspMI	CTAG	2 cut(s)	480, 864
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	5 cut(s)	23, 40, 210, 788, 827
TaiI	ACGT	3 cut(s)	138, 560, 726
TaqI	TCGA	2 cut(s)	829, 882
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	4 cut(s)	52, 161, 440, 606
TfiI	GAWTC	2 cut(s)	12, 754
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TseFI	GTSAC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	7 cut(s)	154, 239, 290, 303, 434, 503, 591
TspGWI	ACGGA	3 cut(s)	24, 79, 1011
Van91I	CCANNNNNTGG	2 cut(s)	380, 602
VpaK11BI	GGWCC	2 cut(s)	283, 383
XapI	RAATTY	2 cut(s)	440, 606
XceI	RCATGY	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	2 cut(s)	480, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.