Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

679506 .. 682991

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1006300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTGCGGTTTCGAATTCGCTGGCTTTGACAGGATCTTCTCTGAAACCATCACAACAGTATCTTGGGAGTGTGGCCCCGACAAACTTTTCACTCAATTCAAAGCATTTTGGGAATGTTCAACTTTCCAACTCCAAGAGGACCATCTCAGTTCAGGCTGCATATAGTGATGGTGGCAGGTCAAACAGTTCAAGCATCTTTGTCAGTGGCTTTGTATTGGGAGGACTTATAGTTGGCACACTGGGTGCTGTGTATGCACCTCAGATCAGTAAAGCACTGGCTGGAGCTGACCGAAAGGATCTGATGAGAAAATTGCCCAAGTTTATATATGATGAAGACAAAGCTCTAGAGAAAACGCGAAAAGTACTGGCTGAGAAGATAGCGCAGCTAAACTCTGCAATTGATGATGTTTCTGGTCAGCTCCGACCAGAGGATGACCCAGATGAAGTACCTGTGAACTCGGAAGAAGTTGAAGCTATCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.06

Weight (kDa)

5.84

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
AccII	CGCG	1 cut(s)	358
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	43, 306
AcsI	RAATTY	1 cut(s)	16
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	2 cut(s)	366, 450
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	4 cut(s)	102, 122, 192, 473
AluBI	AGCT	5 cut(s)	287, 344, 388, 421, 476
AluI	AGCT	5 cut(s)	287, 344, 388, 421, 476
AlwI	GGATC	2 cut(s)	43, 306
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	5, 158, 385
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	76, 141
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	141
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	145, 397
BccI	CCATC	3 cut(s)	58, 152, 164
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	168
BisI	GCNGC	3 cut(s)	6, 159, 386
BlsI	GCNGC	3 cut(s)	7, 160, 387
BmcAI	AGTACT	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	76, 141
BmiI	GGNNCC	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	3 cut(s)	246, 282, 372
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	3 cut(s)	162, 275, 363
BseNI	ACTGG	3 cut(s)	246, 282, 372
BseXI	GCAGC	2 cut(s)	145, 397
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	430
BsnI	GGCC	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	35, 264, 298
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	3 cut(s)	161, 274, 364
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	43, 306
BspT104I	TTCGAA	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	246, 282, 372
BssMI	GATC	3 cut(s)	35, 264, 298
Bst4CI	ACNGT	2 cut(s)	60, 188
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	148, 261, 372
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	38, 267, 301
BstMBI	GATC	3 cut(s)	35, 264, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	145, 397
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	2 cut(s)	35, 298
BstYI	RGATCY	2 cut(s)	35, 298
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	3 cut(s)	211, 239, 275
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	76, 141
Csp6I	GTAC	2 cut(s)	365, 449
CviAII	CATG	1 cut(s)	483
CviQI	GTAC	2 cut(s)	365, 449
DdeI	CTNAG	3 cut(s)	148, 261, 372
DpnI	GATC	3 cut(s)	37, 266, 300
DpnII	GATC	3 cut(s)	35, 264, 298
DraIII	CACNNNGTG	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	486
FaiI	YATR	8 cut(s)	163, 165, 230, 255, 326, 328, 330, 484
FatI	CATG	1 cut(s)	482
Fnu4HI	GCNGC	3 cut(s)	6, 159, 386
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	3 cut(s)	6, 159, 386
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	6, 159, 386
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	486
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	45, 264, 303, 425, 463
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	457
HpyCH4III	ACNGT	2 cut(s)	60, 188
HpyCH4V	TGCA	3 cut(s)	161, 257, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	3 cut(s)	148, 261, 372
Hsp92II	CATG	1 cut(s)	486
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	35, 264, 298
LmnI	GCTCC	2 cut(s)	284, 426
Lsp1109I	GCAGC	2 cut(s)	145, 397
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	347
MalI	GATC	3 cut(s)	37, 266, 300
MboI	GATC	3 cut(s)	35, 264, 298
MboII	GAAGA	4 cut(s)	30, 347, 388, 476
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	2 cut(s)	35, 298
MluCI	AATT	4 cut(s)	16, 97, 311, 399
MmeI	TCCRAC	2 cut(s)	153, 448
MnlI	CCTC	4 cut(s)	132, 215, 270, 424
MunI	CAATTG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	35, 264, 298
NlaIII	CATG	1 cut(s)	486
NlaIV	GGNNCC	1 cut(s)	78
NspV	TTCGAA	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	7, 160, 387
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	76, 141
PsuI	RGATCY	2 cut(s)	35, 298
RsaI	GTAC	2 cut(s)	366, 450
RsaNI	GTAC	2 cut(s)	365, 449
SatI	GCNGC	3 cut(s)	6, 159, 386
Sau3AI	GATC	3 cut(s)	35, 264, 298
Sau96I	GGNCC	2 cut(s)	76, 141
ScaI	AGTACT	1 cut(s)	366
SetI	ASST	8 cut(s)	182, 262, 289, 346, 390, 423, 454, 478
SfaNI	GCATC	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	141
Sse9I	AATT	4 cut(s)	16, 97, 311, 399
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	60, 188
TaqI	TCGA	1 cut(s)	14
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	4 cut(s)	16, 97, 311, 399
TatI	WGTACW	1 cut(s)	364
TscAI	CASTG	3 cut(s)	211, 246, 282
TseI	GCWGC	3 cut(s)	5, 158, 385
TspDTI	ATGAA	2 cut(s)	348, 459
TspRI	CASTG	3 cut(s)	211, 246, 282
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	346
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.