Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

4835823 .. 4842020

Gene Structure 6198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0062000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGGAGAGCGCACTCAAGGAGGTGAGGGATGGTGTTTCTGTGCTTGACCTGGACCCCACAGCCGCCGTCGGTGGCGGCGTTGGGGACGTCTACGGTGAGGATGCTGCCACCGAGGACCAACTCGTCACTCCCTGGACTTTCTCTGTAGCCAGTGGGTACACTCTGCTGAGAGATCCTCAATACAACAAGGGGCTAGCATTTACCGAGAAAGAGAGGGATGCTCATTACTTGCGTGGTCTTCTGCCTCCGTCTACTACCACTCAACAACTTCAGGAGAAGAAGCTGATGCACAATATCAGACAATACCAAGTGCCGCTGCAAAAATATATGGCACTGACCGAACTCCAGGAGAGGAATGAGAGGCTGTTCTACAAACTTCTCATTGATAATGTCGAGGAATTGCTCCCGATTGTGTATACTCCAACTGTTGGTGAGGCTTGCCAGAAATATGGAAGCATTTTCAGACGCCCTCAGGGTCTTTACATAAGTTTGAAAGAGAAAGGTAGAATTCTCGAGGTATTGAAGAACTGGCCTGAAAGGACTATTCAAGTTATTGTTGTCACTGATGGTGAGCGTATATTGGGACTTGGTGACCTTGGTTGTCAGGGGATGGGAATTCCTGTAGGGAAGTTGGCTTTGTACACGGCTCTTGGAGGAGTTCGTCCCTCAGCATGTTTGCCTATAACCATTGATGTTGGGACAAATAATGAGCAGTTGCTGAAGGATGAGTTCTACATTGGGCTCAGACAAAAGAGAGCAACTGGAAAGGAATATGCTGAGCTTTTACATGAGTTCATGGGTGCTGTGAAGCAGAACTATGGCGAAAAAGTTGTTGTACAGTTTGAAGATTTCGCTAACCACAATGCCTTTGAGCTGCTGGCAAAATATCGAAATACTCATCTCGTCTTCAATGATGACATACAGGGGACTGCTGCTGTAGTTCTTGCTGGAGTTGTGGCGGCACTAAAGTTGATAGGTGGTACCCTGTCTGAGCACAAGTTTTTGTTCCTCGGTGCTGGGGAAGCTGGGACAGGTATAGCAGAGCTAATAGCTCTTGAGATTTCAAAAAGGACAAATGTTCCTGTGGAAGAGACGCGCAAAAAGATCTGGCTTGTTGATTCAAAGGGTCTAATTGTTAGCTCTCGTAAAGAATCTCTTCAAAATTTTAAGAAGCCTTGGGCTCATGAACATGAACCCATTAAGGATCTCATTGATGCTGTCAAGGCAATTAAACCAACAGTTCTTATTGGAACATCTGGTATTGGAAAAACCTTCACAAAAGAAGTGATTGAGGCACTAGCTTCCTTCAATGAGAAACCTCTCATTTTGGCTCTTTCCAACCCAACATCACAGTCAGAATGTACAGCTGAAGAAGCTTATACTTGGACTAAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCTTTCGATCCTTTTGAATATGACGGCAAAGTTTATATTCCTGGCCAGTCCAACAATGCTTACATTTTCCCCGGATTTGGTCTTGGCTTGGTCATCTCTGGAGCAATTCGGGTGCATGATGATATGCTTCTAGCAGCTTCTGAGGCCCTGGCGGGACAAGTTTCAAAGGAGAATTTGGATAAAGGACTTATTTATCCACGATTCTCTAAAATCAGAAAGATTTCAGCTGAAATAGCTGCTAATGTAGCTGCCAAGGCATATGAACTTGGTGTTGCTACACGACTCCCTCGTCCAGAAAATCTTGTGAAGTATGCTGAGAGTTGCATGTATAGTCCTCTCTACAGAAGCTACCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

591

Amino Acids

65.24

Weight (kDa)

6.38

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
malic	PF00390	116 - 297	8.9e-79	Malic enzyme, N-terminal domain
Malic_M	PF03949	307 - 560	2.8e-96	Malic enzyme, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	122, 1707
AatII	GACGTC	1 cut(s)	90
Acc65I	GGTACC	1 cut(s)	980
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccI	GTMKAC	3 cut(s)	90, 251, 416
AccII	CGCG	1 cut(s)	1096
AciI	CCGC	5 cut(s)	63, 75, 314, 959, 1571
AclWI	GGATC	3 cut(s)	167, 1212, 1421
AcoI	YGGCCR	1 cut(s)	1462
AcsI	RAATTY	4 cut(s)	507, 615, 1162, 1591
AcuI	CTGAAG	3 cut(s)	254, 740, 1389
AcyI	GRCGYC	2 cut(s)	87, 466
AfaI	GTAC	5 cut(s)	158, 641, 837, 982, 1363
AfiI	CCNNNNNNNGG	2 cut(s)	428, 1496
AgeI	ACCGGT	1 cut(s)	1770
AhdI	GACNNNNNGTC	1 cut(s)	1392
AjnI	CCWGG	5 cut(s)	48, 131, 345, 1459, 1566
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	1 cut(s)	1085
AlwI	GGATC	3 cut(s)	167, 1212, 1421
AlwNI	CAGNNNCTG	2 cut(s)	718, 1559
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	3 cut(s)	530, 1462, 1563
ApeKI	GCWGC	7 cut(s)	104, 316, 874, 932, 1553, 1655, 1667
ApoI	RAATTY	4 cut(s)	507, 615, 1162, 1591
AsiGI	ACCGGT	1 cut(s)	1770
Asp700I	GAANNNNTTC	2 cut(s)	1155, 1639
Asp718I	GGTACC	1 cut(s)	980
AspLEI	GCGC	2 cut(s)	11, 1098
AspS9I	GGNCC	3 cut(s)	52, 115, 1564
AsuC2I	CCSGG	1 cut(s)	1491
AsuHPI	GGTGA	5 cut(s)	34, 107, 443, 581, 602
AsuNHI	GCTAGC	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	52, 115
AxyI	CCTNAGG	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	1464
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	2 cut(s)	744, 1183
BbsI	GAAGAC	2 cut(s)	230, 898
Bbv12I	GWGCWC	1 cut(s)	996
BbvCI	CCTCAGC	1 cut(s)	667
BbvI	GCAGC	7 cut(s)	91, 303, 861, 919, 1565, 1642, 1654
BccI	CCATC	3 cut(s)	23, 560, 604
BceAI	ACGGC	3 cut(s)	50, 660, 1459
BciT130I	CCWGG	5 cut(s)	50, 133, 347, 1461, 1568
BcnI	CCSGG	1 cut(s)	1491
BcoDI	GTCTC	1 cut(s)	1085
BfaI	CTAG	4 cut(s)	194, 1298, 1410, 1550
BfmI	CTRYAG	4 cut(s)	144, 621, 936, 1759
BglII	AGATCT	1 cut(s)	1104
BlpI	GCTNAGC	1 cut(s)	777
Bme1390I	CCNGG	6 cut(s)	50, 133, 347, 1461, 1491, 1568
Bme18I	GGWCC	2 cut(s)	52, 115
BmeRI	GACNNNNNGTC	1 cut(s)	1392
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	52, 115, 1564
BmiI	GGNNCC	2 cut(s)	54, 982
BmrFI	CCNGG	6 cut(s)	50, 133, 347, 1461, 1491, 1568
BmsI	GCATC	4 cut(s)	91, 208, 276, 1204
BmtI	GCTAGC	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	230, 898
BplI	GAGNNNNNCTC	4 cut(s)	160, 192, 205, 237
BpmI	CTGGAG	3 cut(s)	329, 969, 1539
Bpu10I	CCTNAGC	1 cut(s)	667
Bpu1102I	GCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	1076
BpuMI	CCSGG	1 cut(s)	1491
BsaHI	GRCGYC	2 cut(s)	87, 466
BsaJI	CCNNGG	8 cut(s)	111, 131, 595, 1009, 1175, 1489, 1566, 1671
BsaWI	WCCGGW	1 cut(s)	1770
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 1496
Bse118I	RCCGGY	1 cut(s)	1770
Bse1I	ACTGG	4 cut(s)	150, 533, 766, 1465
Bse21I	CCTNAGG	1 cut(s)	471
BseBI	CCWGG	5 cut(s)	50, 133, 347, 1461, 1568
BseDI	CCNNGG	8 cut(s)	111, 131, 595, 1009, 1175, 1489, 1566, 1671
BseGI	GGATG	5 cut(s)	34, 106, 223, 615, 730
BseLI	CCNNNNNNNGG	2 cut(s)	428, 1496
BseMII	CTCAG	8 cut(s)	158, 485, 681, 757, 768, 981, 1551, 1725
BseNI	ACTGG	4 cut(s)	150, 533, 766, 1465
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	7 cut(s)	91, 303, 861, 919, 1565, 1642, 1654
BseYI	CCCAGC	2 cut(s)	1016, 1025
Bsh1236I	CGCG	1 cut(s)	1096
BshFI	GGCC	3 cut(s)	532, 1464, 1565
BshNI	GGYRCC	1 cut(s)	980
BshTI	ACCGGT	1 cut(s)	1770
BsiHKAI	GWGCWC	1 cut(s)	996
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	2 cut(s)	1491, 1771
BslFI	GGGAC	7 cut(s)	98, 597, 648, 712, 940, 1042, 1587
BslI	CCNNNNNNNGG	2 cut(s)	428, 1496
BsmAI	GTCTC	1 cut(s)	1085
BsmBI	CGTCTC	1 cut(s)	1085
BsmFI	GGGAC	7 cut(s)	98, 597, 648, 712, 940, 1042, 1587
BsnI	GGCC	3 cut(s)	532, 1464, 1565
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	3 cut(s)	744, 996, 1183
Bsp1407I	TGTACA	3 cut(s)	639, 835, 1361
Bsp143I	GATC	4 cut(s)	172, 1104, 1204, 1426
Bsp1720I	GCTNAGC	1 cut(s)	777
BspACI	CCGC	5 cut(s)	63, 75, 314, 959, 1571
BspANI	GGCC	3 cut(s)	532, 1464, 1565
BspCNI	CTCAG	8 cut(s)	159, 484, 680, 756, 769, 982, 1552, 1726
BspFNI	CGCG	1 cut(s)	1096
BspHI	TCATGA	1 cut(s)	1183
BspLI	GGNNCC	2 cut(s)	54, 982
BspOI	GCTAGC	1 cut(s)	197
BspPI	GGATC	3 cut(s)	167, 1212, 1421
BspT107I	GGYRCC	1 cut(s)	980
BsrFI	RCCGGY	1 cut(s)	1770
BsrGI	TGTACA	3 cut(s)	639, 835, 1361
BsrI	ACTGG	4 cut(s)	150, 533, 766, 1465
BssAI	RCCGGY	1 cut(s)	1770
BssECI	CCNNGG	8 cut(s)	111, 131, 595, 1009, 1175, 1489, 1566, 1671
BssMI	GATC	4 cut(s)	172, 1104, 1204, 1426
BssNAI	GTATAC	1 cut(s)	417
BssNI	GRCGYC	2 cut(s)	87, 466
BssT1I	CCWWGG	3 cut(s)	595, 1175, 1671
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	5 cut(s)	50, 133, 347, 1461, 1568
Bst4CI	ACNGT	5 cut(s)	95, 427, 840, 1240, 1353
Bst6I	CTCTTC	2 cut(s)	1083, 1161
BstACI	GRCGYC	2 cut(s)	87, 466
BstAPI	GCANNNNNTGC	1 cut(s)	1406
BstAUI	TGTACA	3 cut(s)	639, 835, 1361
BstC8I	GCNNGC	3 cut(s)	195, 439, 879
BstDEI	CTNAG	9 cut(s)	167, 471, 667, 743, 777, 990, 1389, 1560, 1734
BstEII	GGTNACC	1 cut(s)	590
BstF5I	GGATG	5 cut(s)	34, 106, 223, 615, 730
BstFNI	CGCG	1 cut(s)	1096
BstHHI	GCGC	2 cut(s)	11, 1098
BstKTI	GATC	4 cut(s)	175, 1107, 1207, 1429
BstMAI	GTCTC	1 cut(s)	1085
BstMBI	GATC	4 cut(s)	172, 1104, 1204, 1426
BstMWI	GCNNNNNNNGC	8 cut(s)	1022, 1223, 1373, 1406, 1562, 1652, 1664, 1673
BstNI	CCWGG	5 cut(s)	50, 133, 347, 1461, 1568
BstNSI	RCATGY	2 cut(s)	675, 1747
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	6 cut(s)	48, 131, 345, 1459, 1489, 1566
BstSFI	CTRYAG	4 cut(s)	144, 621, 936, 1759
BstUI	CGCG	1 cut(s)	1096
BstV1I	GCAGC	7 cut(s)	91, 303, 861, 919, 1565, 1642, 1654
BstV2I	GAAGAC	2 cut(s)	230, 898
BstX2I	RGATCY	3 cut(s)	172, 1104, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	3 cut(s)	172, 1104, 1204
BstZ17I	GTATAC	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	3 cut(s)	532, 1464, 1565
BtsCI	GGATG	5 cut(s)	34, 106, 223, 615, 730
BtsIMutI	CAGTG	3 cut(s)	157, 332, 561
Cac8I	GCNNGC	3 cut(s)	195, 439, 879
CaiI	CAGNNNCTG	2 cut(s)	718, 1559
CciI	TCATGA	1 cut(s)	1183
CfoI	GCGC	2 cut(s)	11, 1098
Cfr10I	RCCGGY	1 cut(s)	1770
Cfr13I	GGNCC	3 cut(s)	52, 115, 1564
CseI	GACGC	2 cut(s)	474, 1102
Csp6I	GTAC	5 cut(s)	157, 640, 836, 981, 1362
CspAI	ACCGGT	1 cut(s)	1770
CviAII	CATG	7 cut(s)	672, 788, 796, 1184, 1190, 1535, 1744
CviQI	GTAC	5 cut(s)	157, 640, 836, 981, 1362
DdeI	CTNAG	9 cut(s)	167, 471, 667, 743, 777, 990, 1389, 1560, 1734
DpnI	GATC	4 cut(s)	174, 1106, 1206, 1428
DpnII	GATC	4 cut(s)	172, 1104, 1204, 1426
DrdI	GACNNNNNNGTC	2 cut(s)	122, 1707
DriI	GACNNNNNGTC	1 cut(s)	1392
DseDI	GACNNNNNNGTC	2 cut(s)	122, 1707
EaeI	YGGCCR	1 cut(s)	1462
Eam1104I	CTCTTC	2 cut(s)	1083, 1161
Eam1105I	GACNNNNNGTC	1 cut(s)	1392
EarI	CTCTTC	2 cut(s)	1083, 1161
Eco130I	CCWWGG	3 cut(s)	595, 1175, 1671
Eco24I	GRGCYC	2 cut(s)	744, 1183
Eco47I	GGWCC	2 cut(s)	52, 115
Eco57I	CTGAAG	3 cut(s)	254, 740, 1389
Eco81I	CCTNAGG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	590
EcoO109I	RGGNCCY	1 cut(s)	1564
EcoO65I	GGTNACC	1 cut(s)	590
EcoRI	GAATTC	2 cut(s)	507, 615
EcoRII	CCWGG	5 cut(s)	48, 131, 345, 1459, 1566
EcoT14I	CCWWGG	3 cut(s)	595, 1175, 1671
EcoT38I	GRGCYC	2 cut(s)	744, 1183
ErhI	CCWWGG	3 cut(s)	595, 1175, 1671
Esp3I	CGTCTC	1 cut(s)	1085
FaeI	CATG	7 cut(s)	675, 791, 799, 1187, 1193, 1538, 1747
FalI	AAGNNNNNCTT	2 cut(s)	1140, 1172
FaqI	GGGAC	7 cut(s)	98, 597, 648, 712, 940, 1042, 1587
FatI	CATG	7 cut(s)	671, 787, 795, 1183, 1189, 1534, 1743
FauI	CCCGC	1 cut(s)	1564
FauNDI	CATATG	1 cut(s)	1678
FblI	GTMKAC	3 cut(s)	90, 251, 416
FokI	GGATG	5 cut(s)	41, 113, 230, 622, 737
FriOI	GRGCYC	2 cut(s)	744, 1183
FspBI	CTAG	4 cut(s)	194, 1298, 1410, 1550
GlaI	GCGC	2 cut(s)	10, 1097
GsaI	CCCAGC	2 cut(s)	1020, 1029
GsuI	CTGGAG	3 cut(s)	329, 969, 1539
HaeIII	GGCC	3 cut(s)	532, 1464, 1565
HapII	CCGG	2 cut(s)	1491, 1771
HgaI	GACGC	2 cut(s)	474, 1102
HhaI	GCGC	2 cut(s)	11, 1098
Hin1I	GRCGYC	2 cut(s)	87, 466
Hin1II	CATG	7 cut(s)	675, 791, 799, 1187, 1193, 1538, 1747
Hin6I	GCGC	2 cut(s)	9, 1096
HinP1I	GCGC	2 cut(s)	9, 1096
HindIII	AAGCTT	1 cut(s)	1374
HinfI	GANTC	4 cut(s)	1118, 1151, 1620, 1701
HpaII	CCGG	2 cut(s)	1491, 1771
HphI	GGTGA	5 cut(s)	34, 107, 443, 581, 602
Hpy166II	GTNNAC	5 cut(s)	91, 159, 252, 417, 642
Hpy188I	TCNGA	7 cut(s)	299, 464, 746, 991, 1357, 1561, 1634
Hpy188III	TCNNGA	7 cut(s)	272, 406, 512, 1055, 1184, 1518, 1712
Hpy8I	GTNNAC	5 cut(s)	91, 159, 252, 417, 642
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	715, 1282, 1315
HpyCH4III	ACNGT	5 cut(s)	95, 427, 840, 1240, 1353
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	289, 319, 1400, 1534, 1743
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1022, 1223, 1373, 1406, 1562, 1652, 1664, 1673
HpyF3I	CTNAG	9 cut(s)	167, 471, 667, 743, 777, 990, 1389, 1560, 1734
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	87, 466
Hsp92II	CATG	7 cut(s)	675, 791, 799, 1187, 1193, 1538, 1747
HspAI	GCGC	2 cut(s)	9, 1096
KpnI	GGTACC	1 cut(s)	984
Kzo9I	GATC	4 cut(s)	172, 1104, 1204, 1426
LmnI	GCTCC	2 cut(s)	408, 1520
Lsp1109I	GCAGC	7 cut(s)	91, 303, 861, 919, 1565, 1642, 1654
LweI	GCATC	4 cut(s)	91, 208, 276, 1204
MaeI	CTAG	4 cut(s)	194, 1298, 1410, 1550
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	124, 559, 590
MalI	GATC	4 cut(s)	174, 1106, 1206, 1428
MboI	GATC	4 cut(s)	172, 1104, 1204, 1426
MboII	GAAGA	8 cut(s)	230, 289, 535, 857, 898, 1100, 1148, 1382
MflI	RGATCY	3 cut(s)	172, 1104, 1204
MhlI	GDGCHC	3 cut(s)	744, 996, 1183
MlsI	TGGCCA	1 cut(s)	1464
MluCI	AATT	9 cut(s)	398, 507, 615, 1131, 1162, 1227, 1401, 1524, 1591
MluNI	TGGCCA	1 cut(s)	1464
MlyI	GAGTC	1 cut(s)	1695
MmeI	TCCRAC	3 cut(s)	446, 1362, 1494
Mox20I	TGGCCA	1 cut(s)	1464
MroXI	GAANNNNTTC	2 cut(s)	1155, 1639
MscI	TGGCCA	1 cut(s)	1464
MseI	TTAA	3 cut(s)	1167, 1200, 1230
MslI	CAYNNNNRTG	1 cut(s)	1188
Msp20I	TGGCCA	1 cut(s)	1464
MspA1I	CMGCKG	3 cut(s)	316, 1367, 1646
MspI	CCGG	2 cut(s)	1491, 1771
MspR9I	CCNGG	6 cut(s)	50, 133, 347, 1461, 1491, 1568
MvaI	CCWGG	5 cut(s)	50, 133, 347, 1461, 1568
MvnI	CGCG	1 cut(s)	1096
MwoI	GCNNNNNNNGC	8 cut(s)	1022, 1223, 1373, 1406, 1562, 1652, 1664, 1673
NciI	CCSGG	1 cut(s)	1491
NdeI	CATATG	1 cut(s)	1678
NdeII	GATC	4 cut(s)	172, 1104, 1204, 1426
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	7 cut(s)	675, 791, 799, 1187, 1193, 1538, 1747
NlaIV	GGNNCC	2 cut(s)	54, 982
NmuCI	GTSAC	3 cut(s)	124, 559, 590
NspI	RCATGY	2 cut(s)	675, 1747
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	1183
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 1705
PdmI	GAANNNNTTC	2 cut(s)	1155, 1639
PfeI	GAWTC	3 cut(s)	1118, 1151, 1620
PflMI	CCANNNNNTGG	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	345
PinAI	ACCGGT	1 cut(s)	1770
PleI	GAGTC	1 cut(s)	1695
PpsI	GAGTC	1 cut(s)	1695
Psp6I	CCWGG	5 cut(s)	48, 131, 345, 1459, 1566
PspEI	GGTNACC	1 cut(s)	590
PspFI	CCCAGC	2 cut(s)	1016, 1025
PspGI	CCWGG	5 cut(s)	48, 131, 345, 1459, 1566
PspN4I	GGNNCC	2 cut(s)	54, 982
PspPI	GGNCC	3 cut(s)	52, 115, 1564
PstNI	CAGNNNCTG	2 cut(s)	718, 1559
PsuI	RGATCY	3 cut(s)	172, 1104, 1204
PvuII	CAGCTG	2 cut(s)	1367, 1646
RsaI	GTAC	5 cut(s)	158, 641, 837, 982, 1363
RsaNI	GTAC	5 cut(s)	157, 640, 836, 981, 1362
RseI	CAYNNNNRTG	1 cut(s)	1188
SaqAI	TTAA	3 cut(s)	1167, 1200, 1230
Sau3AI	GATC	4 cut(s)	172, 1104, 1204, 1426
Sau96I	GGNCC	3 cut(s)	52, 115, 1564
SchI	GAGTC	1 cut(s)	1695
ScrFI	CCNGG	6 cut(s)	50, 133, 347, 1461, 1491, 1568
SduI	GDGCHC	3 cut(s)	744, 996, 1183
SfaNI	GCATC	4 cut(s)	91, 208, 276, 1204
SfcI	CTRYAG	4 cut(s)	144, 621, 936, 1759
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	2 cut(s)	52, 115
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	1188
SmlI	CTYRAG	3 cut(s)	14, 512, 1055
SmoI	CTYRAG	3 cut(s)	14, 512, 1055
Sse9I	AATT	9 cut(s)	398, 507, 615, 1131, 1162, 1227, 1401, 1524, 1591
SsiI	CCGC	5 cut(s)	63, 75, 314, 959, 1571
SspMI	CTAG	4 cut(s)	194, 1298, 1410, 1550
StyD4I	CCNGG	6 cut(s)	48, 131, 345, 1459, 1489, 1566
StyI	CCWWGG	3 cut(s)	595, 1175, 1671
TaaI	ACNGT	5 cut(s)	95, 427, 840, 1240, 1353
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	4 cut(s)	393, 513, 889, 1425
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	9 cut(s)	398, 507, 615, 1131, 1162, 1227, 1401, 1524, 1591
TatI	WGTACW	3 cut(s)	639, 835, 1361
TauI	GCSGC	4 cut(s)	65, 78, 316, 962
TfiI	GAWTC	3 cut(s)	1118, 1151, 1620
Tru1I	TTAA	3 cut(s)	1167, 1200, 1230
Tru9I	TTAA	3 cut(s)	1167, 1200, 1230
TscAI	CASTG	3 cut(s)	157, 339, 568
TseFI	GTSAC	3 cut(s)	124, 559, 590
TseI	GCWGC	7 cut(s)	104, 316, 874, 932, 1553, 1655, 1667
Tsp45I	GTSAC	3 cut(s)	124, 559, 590
TspDTI	ATGAA	4 cut(s)	784, 1200, 1206, 1695
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	3 cut(s)	157, 339, 568
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	52, 115
XapI	RAATTY	4 cut(s)	507, 615, 1162, 1591
XceI	RCATGY	2 cut(s)	675, 1747
XhoI	CTCGAG	1 cut(s)	512
XmiI	GTMKAC	3 cut(s)	90, 251, 416
XmnI	GAANNNNTTC	2 cut(s)	1155, 1639
XspI	CTAG	4 cut(s)	194, 1298, 1410, 1550
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.