pycom15g20390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002670
Physical Location & Seq
Forward (+)
14577278 .. 14579519
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20390.4

Sequence Viewer

Length: 495 bp
ATGAGTGCTCTCCCGAGTTCGTTCGTTTCAGTTCAGAATCACAAAACCCGCTTCTTAACTGGTTCTCCAAAGCCGACCTACCATTGTCTTTTGAACGTTAGTCCCAGTAATTTAAATGCCGCATTTCAGGACAAAGCAAAGCTTACTTCTCATAGAAGGTCATTTGTTGTCCGAGCAGGAGCGGATAAACCAAGTTCTGCAAGTATCTTCGTTGGTGGTTTTGTATTGGGAGGGATAGTTGTTGGAGCATTAGGTTGTGTATATGCACCTCAGATAAGCAAGGCACTAGCTGGAGCCGATAGAAAAGACTTGATGAGGAAGTTACCAAAATTTATTTATGATGAAGAGAAAGCTCTTGAGAAAACCCGCAAAATACTGGCGGAGAAGATTGCGCAGCTAAATTCCGCCATAGATGACGTTTCTGCTCAGCTGCATGGAGATGATGCCCCGAATGGAGCCGCAGTGGCTTCGGACGAAATTGAAGCTTCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.42

Weight (kDa)

9.12

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 393
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 7 cut(s) 49, 120, 182, 367, 380, 405, 459
AclI AACGTT 1 cut(s) 96
AcsI RAATTY 2 cut(s) 329, 400
AgsI TTSAA 2 cut(s) 94, 482
AluBI AGCT 6 cut(s) 142, 290, 353, 397, 430, 485
AluI AGCT 6 cut(s) 142, 290, 353, 397, 430, 485
Alw21I GWGCWC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 394, 430
ApoI RAATTY 2 cut(s) 329, 400
AspLEI GCGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 406, 417
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BfaI CTAG 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 464
BisI GCNGC 4 cut(s) 120, 395, 431, 459
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 4 cut(s) 121, 396, 432, 460
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 295, 457
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 433
BmuI ACTGGG 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 377
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 222, 252, 447, 477
Bse1I ACTGG 3 cut(s) 64, 105, 381
BseMII CTCAG 2 cut(s) 284, 440
BseNI ACTGG 3 cut(s) 64, 105, 381
BseXI GCAGC 2 cut(s) 406, 417
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 7 cut(s) 49, 120, 182, 367, 380, 405, 459
BspCNI CTCAG 2 cut(s) 283, 439
BspLI GGNNCC 2 cut(s) 295, 457
BsrBI CCGCTC 1 cut(s) 182
BsrI ACTGG 3 cut(s) 64, 105, 381
Bst6I CTCTTC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 270, 426
BstHHI GCGC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 406, 417
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
CfoI GCGC 1 cut(s) 394
CviAII CATG 1 cut(s) 434
DdeI CTNAG 2 cut(s) 270, 426
DraI TTTAAA 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 2 cut(s) 394, 395
Eco88I CYCGRG 1 cut(s) 13
FaeI CATG 1 cut(s) 437
FaiI YATR 8 cut(s) 153, 262, 264, 339, 410, 435, 491, 493
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 433
FauI CCCGC 2 cut(s) 56, 374
Fnu4HI GCNGC 4 cut(s) 120, 395, 431, 459
Fsp4HI GCNGC 4 cut(s) 120, 395, 431, 459
FspBI CTAG 1 cut(s) 287
FspI TGCGCA 1 cut(s) 393
GlaI GCGC 1 cut(s) 393
GluI GCNGC 4 cut(s) 120, 395, 431, 459
GsuI CTGGAG 1 cut(s) 312
HhaI GCGC 1 cut(s) 394
Hin1II CATG 1 cut(s) 437
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 2 cut(s) 140, 483
HinfI GANTC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 36, 173, 273, 472
Hpy188III TCNNGA 3 cut(s) 13, 128, 356
HpyAV CCTTC 1 cut(s) 150
HpyCH4IV ACGT 2 cut(s) 96, 417
HpyCH4V TGCA 3 cut(s) 200, 266, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 270, 426
HpySE526I ACGT 2 cut(s) 96, 417
Hsp92II CATG 1 cut(s) 437
HspAI GCGC 1 cut(s) 392
LmnI GCTCC 4 cut(s) 179, 245, 293, 455
LpnPI CCDG 6 cut(s) 45, 113, 118, 162, 276, 362
Lsp1109I GCAGC 2 cut(s) 406, 417
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 96, 417
MaeIII GTNAC 1 cut(s) 321
MbiI CCGCTC 1 cut(s) 182
MboII GAAGA 3 cut(s) 199, 356, 397
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 4 cut(s) 109, 329, 400, 477
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 224, 279, 309
MseI TTAA 2 cut(s) 56, 113
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 430
MwoI GCNNNNNNNGC 1 cut(s) 464
NlaIII CATG 1 cut(s) 437
NlaIV GGNNCC 2 cut(s) 295, 457
NsbI TGCGCA 1 cut(s) 393
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 4 cut(s) 121, 396, 432, 460
Psp1406I AACGTT 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 295, 457
PvuII CAGCTG 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 56, 113
SatI GCNGC 4 cut(s) 120, 395, 431, 459
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 1 cut(s) 433
SmiI ATTTAAAT 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 109, 329, 400, 477
SsiI CCGC 7 cut(s) 49, 120, 182, 367, 380, 405, 459
SspMI CTAG 1 cut(s) 287
SwaI ATTTAAAT 1 cut(s) 114
TaiI ACGT 2 cut(s) 99, 420
TasI AATT 4 cut(s) 109, 329, 400, 477
TauI GCSGC 2 cut(s) 122, 461
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 2 cut(s) 56, 113
Tru9I TTAA 2 cut(s) 56, 113
TscAI CASTG 1 cut(s) 468
TseI GCWGC 2 cut(s) 394, 430
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 1 cut(s) 468
XapI RAATTY 2 cut(s) 329, 400
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.