Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002670

Physical Location & Seq

Genomic Coordinates Forward (+)

534126 .. 536691

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00560.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGGATAACCACCGGCAGAGCCCCAACATTTGAGGGAAGCAGCATTGCATTGTTATTACCGAACCAATTAAACAAGTCGTCTTCTTCTTCTCCTCCCAACAAAAGAGTCGAACAACACTCGTTTCCACTCTCTTTGTTGGTGAGGTGTGGCCCGCAAAATCCAGACCTCAAAGCATTAAGCATGGCTGCGGTTTCGAATTCGCTGGCTTTAACAGGATCTTCTCTGAAACCATCACAACAGTATCTTGGGAGTGTGACCCCGACAAACTTTTCACTGAATGCAAAGCTTATTGGGAAAGTTCAACTTTCTAACTCCAAGCGGTCCATCTCAGTTCAGGCTGCATATAGTGATGGTGGCAGGTCAAACAGTTCAAGCATCTTTGTCAGTGGCTTTGTATTGGGAGGACTTATAGTTGGCACACTGGGTGCTGTGTATGCACCTCAGATCAGTAAAGCACTGGCCGGAGCTGACCGAAAGGATCTGATGAGAAAATTGCCCAAGTTCATATATGATGAAGACAAAGCTCTGGAGAAAACACGAAAAGTACTGGCTGAGAAGATAGCGCAGCTAAACTCTGCAATTGATGATGTTTCTGGTCAGCTCCGACCAGAGGATGACCCAGATGAATTACCTGTGAACTCGGAAGAAGTTGAAGCTTACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

23.72

Weight (kDa)

8.92

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42960
fragaria_vesca	FvH4_1g10160 FvH4_1g10160 FvH4_1g10160 FvH4_5g25770
malus_domestica	MD00G1135400.v1.1 MD02G1113600.v1.1 MD06G1006300.v1.1 MD15G1228800.v1.1
prunus_persica	Prupe.5G007900_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1 Prupe.7G185300_v2.0.a1
pyrus_communis	pycom02g08860 pycom06g00560 pycom15g20390 pycom16g26100
rosa_chinensis	RchiOBHm_Chr2g0096941 RchiOBHm_Chr7g0216241
rosa_laevigata	RLG00000002588 RLG00000016685
rosa_multiflora	Rmu_sc0001651.1_g000004 Rmu_sc0003545.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145140 Rroxscaffold_3G00243560
rosa_rugosa	Rorug02G0062000 Rorug02G0062100 Rorug07G0159300
rosa_samantha	Rh2AG110100 Rh2BG111900 Rh2CG114000 Rh2DG113100 Rh7AG296500 Rh7BG288700 Rh7CG316900 Rh7DG299200
rosa_wichuraiana	Rw2G008500 Rw7G025230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AciI	CCGC	3 cut(s)	155, 191, 322
AclWI	GGATC	2 cut(s)	226, 489
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	3 cut(s)	305, 375, 656
AluBI	AGCT	6 cut(s)	289, 470, 527, 571, 604, 659
AluI	AGCT	6 cut(s)	289, 470, 527, 571, 604, 659
AlwI	GGATC	2 cut(s)	226, 489
AoxI	GGCC	2 cut(s)	151, 462
ApeKI	GCWGC	4 cut(s)	42, 188, 341, 568
ApoI	RAATTY	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	152, 324
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	324
BaeI	ACNNNNGTAYC	2 cut(s)	227, 260
BanII	GRGCYC	1 cut(s)	25
BbsI	GAAGAC	2 cut(s)	75, 525
BbvI	GCAGC	4 cut(s)	54, 175, 328, 580
BccI	CCATC	3 cut(s)	241, 335, 347
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	43, 189, 342, 569
BlsI	GCNGC	4 cut(s)	44, 190, 343, 570
BmcAI	AGTACT	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	152, 324
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	2 cut(s)	75, 525
BpmI	CTGGAG	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	429, 465, 555
Bse3DI	GCAATG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	345, 458, 546
BseNI	ACTGG	3 cut(s)	429, 465, 555
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	54, 175, 328, 580
BshFI	GGCC	2 cut(s)	153, 464
BsiSI	CCGG	2 cut(s)	15, 465
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	153, 464
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	218, 447, 481
BspACI	CCGC	3 cut(s)	155, 191, 322
BspANI	GGCC	2 cut(s)	153, 464
BspCNI	CTCAG	3 cut(s)	344, 457, 547
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	226, 489
BspT104I	TTCGAA	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	429, 465, 555
BssAI	RCCGGY	1 cut(s)	14
BssMI	GATC	3 cut(s)	218, 447, 481
Bst4CI	ACNGT	2 cut(s)	243, 371
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	155, 207
BstDEI	CTNAG	3 cut(s)	331, 444, 555
BstF5I	GGATG	1 cut(s)	622
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	3 cut(s)	221, 450, 484
BstMBI	GATC	3 cut(s)	218, 447, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstV1I	GCAGC	4 cut(s)	54, 175, 328, 580
BstV2I	GAAGAC	2 cut(s)	75, 525
BstX2I	RGATCY	2 cut(s)	218, 481
BstYI	RGATCY	2 cut(s)	218, 481
BsuRI	GGCC	2 cut(s)	153, 464
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	4 cut(s)	275, 394, 422, 458
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	155, 207
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	152, 324
Csp6I	GTAC	1 cut(s)	548
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	3 cut(s)	331, 444, 555
DpnI	GATC	3 cut(s)	220, 449, 483
DpnII	GATC	3 cut(s)	218, 447, 481
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	1 cut(s)	187
FaiI	YATR	8 cut(s)	185, 346, 348, 413, 438, 509, 511, 513
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	162
Fnu4HI	GCNGC	4 cut(s)	43, 189, 342, 569
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	43, 189, 342, 569
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	4 cut(s)	43, 189, 342, 569
GsuI	CTGGAG	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	153, 464
HapII	CCGG	2 cut(s)	15, 465
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	2 cut(s)	287, 657
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	2 cut(s)	15, 465
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	5 cut(s)	228, 447, 486, 608, 646
Hpy188III	TCNNGA	2 cut(s)	164, 530
Hpy8I	GTNNAC	1 cut(s)	640
HpyCH4III	ACNGT	2 cut(s)	243, 371
HpyCH4V	TGCA	5 cut(s)	50, 284, 344, 440, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	3 cut(s)	331, 444, 555
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	3 cut(s)	218, 447, 481
LmnI	GCTCC	2 cut(s)	467, 609
Lsp1109I	GCAGC	4 cut(s)	54, 175, 328, 580
LweI	GCATC	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	220, 449, 483
MboI	GATC	3 cut(s)	218, 447, 481
MboII	GAAGA	7 cut(s)	75, 78, 81, 213, 530, 571, 659
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	2 cut(s)	218, 481
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	5 cut(s)	68, 199, 494, 582, 629
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	7 cut(s)	28, 105, 138, 179, 398, 453, 607
MseI	TTAA	3 cut(s)	71, 179, 212
MspI	CCGG	2 cut(s)	15, 465
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	3 cut(s)	218, 447, 481
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	197
PctI	GAATGC	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	44, 190, 343, 570
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	152, 324
PsuI	RGATCY	2 cut(s)	218, 481
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
SaqAI	TTAA	3 cut(s)	71, 179, 212
SatI	GCNGC	4 cut(s)	43, 189, 342, 569
Sau3AI	GATC	3 cut(s)	218, 447, 481
Sau96I	GGNCC	2 cut(s)	152, 324
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	5 cut(s)	68, 199, 494, 582, 629
SsiI	CCGC	3 cut(s)	155, 191, 322
TaaI	ACNGT	2 cut(s)	243, 371
TaqI	TCGA	2 cut(s)	111, 197
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	5 cut(s)	68, 199, 494, 582, 629
TatI	WGTACW	1 cut(s)	547
Tru1I	TTAA	3 cut(s)	71, 179, 212
Tru9I	TTAA	3 cut(s)	71, 179, 212
TscAI	CASTG	4 cut(s)	282, 394, 429, 465
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	4 cut(s)	42, 188, 341, 568
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	3 cut(s)	496, 531, 642
TspRI	CASTG	4 cut(s)	282, 394, 429, 465
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	199
ZrmI	AGTACT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.